RNA–Protein interactions for RNA: ENST00000542002.5

YBX3-212, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 952 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-212ENST00000542002 ATRNL1Q5VV63 1379 aa11.85□□□□□ -0.51
YBX3-212ENST00000542002 TCRBV5S4A2TA0A5A2 114 aa11.85□□□□□ -0.51
YBX3-212ENST00000542002 IREB2P48200 963 aaKnown RBP11.85□□□□□ -0.51
YBX3-212ENST00000542002 MAP3K9P80192 1104 aa11.85□□□□□ -0.51
YBX3-212ENST00000542002 MAP3K10Q02779 954 aa11.85□□□□□ -0.51
YBX3-212ENST00000542002 VGLL4Q14135 290 aa11.85□□□□□ -0.51
YBX3-212ENST00000542002 ANKRD45Q5TZF3 282 aa11.85□□□□□ -0.51
YBX3-212ENST00000542002 SPRYD7Q5W111 196 aa11.85□□□□□ -0.51
YBX3-212ENST00000542002 MIGA1Q8NAN2 632 aa11.85□□□□□ -0.51
YBX3-212ENST00000542002 ECHDC1Q9NTX5 307 aa11.85□□□□□ -0.51
YBX3-212ENST00000542002 TSKSQ9UJT2 592 aa11.85□□□□□ -0.51
YBX3-212ENST00000542002 ZNF112Q9UJU3 913 aa11.85□□□□□ -0.51
YBX3-212ENST00000542002 MYH13Q9UKX3 1938 aa11.85□□□□□ -0.51
YBX3-212ENST00000542002 ECM29Q5VYK3 1845 aa11.84□□□□□ -0.51
YBX3-212ENST00000542002 UNCXA6NJT0 531 aa11.84□□□□□ -0.51
YBX3-212ENST00000542002 PHF20L1A8MW92 1017 aa11.84□□□□□ -0.51
YBX3-212ENST00000542002 PDE6AP16499 860 aa11.84□□□□□ -0.51
YBX3-212ENST00000542002 MAP3K12Q12852 859 aa11.84□□□□□ -0.51
YBX3-212ENST00000542002 AAMPQ13685 434 aa11.84□□□□□ -0.51
YBX3-212ENST00000542002 SLC9C2Q5TAH2 1124 aa11.84□□□□□ -0.51
YBX3-212ENST00000542002 COL13A1Q5TAT6 717 aaPredicted RBP11.84□□□□□ -0.51
YBX3-212ENST00000542002 TEX11Q8IYF3 940 aa11.84□□□□□ -0.51
YBX3-212ENST00000542002 ANKRD13AQ8IZ07 590 aa11.84□□□□□ -0.51
YBX3-212ENST00000542002 TGFBRAP1Q8WUH2 860 aa11.84□□□□□ -0.51
YBX3-212ENST00000542002 WNK4Q96J92 1243 aa11.84□□□□□ -0.51
YBX3-212ENST00000542002 ELP3Q9H9T3 547 aa11.84□□□□□ -0.51
YBX3-212ENST00000542002 PAG1Q9NWQ8 432 aa11.84□□□□□ -0.51
YBX3-212ENST00000542002 SALL3Q9BXA9 1300 aa11.84□□□□□ -0.51
YBX3-212ENST00000542002 RPAP1Q9BWH6 1393 aaPredicted RBP11.83□□□□□ -0.52
YBX3-212ENST00000542002 IGSF3O75054 1194 aa11.83□□□□□ -0.52
YBX3-212ENST00000542002 BAG3O95817 575 aa11.83□□□□□ -0.52
YBX3-212ENST00000542002 MAP4K4O95819 1239 aaPredicted RBP11.83□□□□□ -0.52
YBX3-212ENST00000542002 HSPA8P11142 646 aaKnown RBP11.83□□□□□ -0.52
YBX3-212ENST00000542002 INPP5BP32019 993 aa11.83□□□□□ -0.52
YBX3-212ENST00000542002 TM4SF4P48230 202 aa11.83□□□□□ -0.52
YBX3-212ENST00000542002 LBX1P52954 281 aa11.83□□□□□ -0.52
YBX3-212ENST00000542002 TTF1Q15361 905 aaPredicted RBP11.83□□□□□ -0.52
YBX3-212ENST00000542002 MAPKAPK5Q8IW41 473 aa11.83□□□□□ -0.52
YBX3-212ENST00000542002 SMC5Q8IY18 1101 aa11.83□□□□□ -0.52
YBX3-212ENST00000542002 PI4K2BQ8TCG2 481 aa11.83□□□□□ -0.52
YBX3-212ENST00000542002 WRNIP1Q96S55 665 aa11.83□□□□□ -0.52
YBX3-212ENST00000542002 RIOK1Q9BRS2 568 aaKnown RBP11.83□□□□□ -0.52
YBX3-212ENST00000542002 OSBPL5Q9H0X9 879 aaPredicted RBP11.83□□□□□ -0.52
YBX3-212ENST00000542002 RNF186Q9NXI6 227 aa11.83□□□□□ -0.52
YBX3-212ENST00000542002 SNCAIPQ9Y6H5 919 aa11.83□□□□□ -0.52
YBX3-212ENST00000542002 MYH2Q9UKX2 1941 aa11.83□□□□□ -0.52
YBX3-212ENST00000542002 ZNF532Q9HCE3 1301 aa11.83□□□□□ -0.52
YBX3-212ENST00000542002 THSD7BQ9C0I4 1608 aa11.82□□□□□ -0.52
YBX3-212ENST00000542002 FAM196BA6NMK8 535 aa11.82□□□□□ -0.52
YBX3-212ENST00000542002 RRP1BQ14684 758 aaKnown RBP11.82□□□□□ -0.52
YBX3-212ENST00000542002 B4GALNT3Q6L9W6 998 aa11.82□□□□□ -0.52
YBX3-212ENST00000542002 ZSCAN29Q8IWY8 852 aaPredicted RBP11.82□□□□□ -0.52
YBX3-212ENST00000542002 GCC1Q96CN9 775 aa11.82□□□□□ -0.52
YBX3-212ENST00000542002 OPTNQ96CV9 577 aa11.82□□□□□ -0.52
YBX3-212ENST00000542002 PTPN18Q99952 460 aa11.82□□□□□ -0.52
YBX3-212ENST00000542002 ZNF341Q9BYN7 854 aa11.82□□□□□ -0.52
YBX3-212ENST00000542002 RWDD1Q9H446 243 aaPredicted RBP11.82□□□□□ -0.52
YBX3-212ENST00000542002 PALD1Q9ULE6 856 aa11.82□□□□□ -0.52
YBX3-212ENST00000542002 TRPA1O75762 1119 aa11.81□□□□□ -0.52
YBX3-212ENST00000542002 ADD2P35612 726 aa11.81□□□□□ -0.52
YBX3-212ENST00000542002 CTCFP49711 727 aaPredicted RBP11.81□□□□□ -0.52
YBX3-212ENST00000542002 DCAF15Q66K64 600 aa11.81□□□□□ -0.52
YBX3-212ENST00000542002 AIDAQ96BJ3 306 aa11.81□□□□□ -0.52
YBX3-212ENST00000542002 MS4A4AQ96JQ5 239 aa11.81□□□□□ -0.52
YBX3-212ENST00000542002 R3HDMLQ9H3Y0 253 aa11.81□□□□□ -0.52
YBX3-212ENST00000542002 FLT1P17948 1338 aa11.81□□□□□ -0.52
YBX3-212ENST00000542002 MYO5AQ9Y4I1 1855 aaKnown RBP11.8□□□□□ -0.52
YBX3-212ENST00000542002 PRKAB2O43741 272 aa11.8□□□□□ -0.52
YBX3-212ENST00000542002 TBC1D12O60347 775 aa11.8□□□□□ -0.52
YBX3-212ENST00000542002 ZBTB48P10074 688 aaPredicted RBP11.8□□□□□ -0.52
YBX3-212ENST00000542002 PLCG2P16885 1265 aa11.8□□□□□ -0.52
YBX3-212ENST00000542002 JAG1P78504 1218 aa11.8□□□□□ -0.52
YBX3-212ENST00000542002 EVX2Q03828 476 aa11.8□□□□□ -0.52
YBX3-212ENST00000542002 SLC4A8Q2Y0W8 1093 aa11.8□□□□□ -0.52
YBX3-212ENST00000542002 LCORLQ8N3X6 602 aa11.8□□□□□ -0.52
YBX3-212ENST00000542002 HOOK2Q96ED9 719 aa11.8□□□□□ -0.52
YBX3-212ENST00000542002 NOL10Q9BSC4 688 aaKnown RBP11.8□□□□□ -0.52
YBX3-212ENST00000542002 LNPKQ9C0E8 428 aa11.8□□□□□ -0.52
YBX3-212ENST00000542002 FRMD4AQ9P2Q2 1039 aaPredicted RBP11.8□□□□□ -0.52
YBX3-212ENST00000542002 STAP2Q9UGK3 403 aa11.8□□□□□ -0.52
YBX3-212ENST00000542002 SAP30BPQ9UHR5 308 aaKnown RBP11.8□□□□□ -0.52
YBX3-212ENST00000542002 TTC41PQ6P2S7 1318 aa11.8□□□□□ -0.52
YBX3-212ENST00000542002 MAGEB6P1A0A0J9YX57 407 aa11.79□□□□□ -0.52
YBX3-212ENST00000542002 TESPA1A2RU30 521 aaPredicted RBP11.79□□□□□ -0.52
YBX3-212ENST00000542002 SPDYE5A6NIY4 337 aa11.79□□□□□ -0.52
YBX3-212ENST00000542002 IGF2BP3O00425 579 aaKnown RBP eCLIP11.79□□□□□ -0.52
YBX3-212ENST00000542002 IRF6O14896 467 aa11.79□□□□□ -0.52
YBX3-212ENST00000542002 TBC1D8O95759 1140 aa11.79□□□□□ -0.52
YBX3-212ENST00000542002 MX1P20591 662 aa11.79□□□□□ -0.52
YBX3-212ENST00000542002 NUCB1Q02818 461 aa11.79□□□□□ -0.52
YBX3-212ENST00000542002 TMED8Q6PL24 325 aaPredicted RBP11.79□□□□□ -0.52
YBX3-212ENST00000542002 METTL16Q86W50 562 aaKnown RBP11.79□□□□□ -0.52
YBX3-212ENST00000542002 OTUD5Q96G74 571 aa11.79□□□□□ -0.52
YBX3-212ENST00000542002 BEGAINQ9BUH8 593 aa11.79□□□□□ -0.52
YBX3-212ENST00000542002 PUS7LQ9H0K6 701 aaKnown RBP11.79□□□□□ -0.52
YBX3-212ENST00000542002 DNAJC18Q9H819 358 aa11.79□□□□□ -0.52
YBX3-212ENST00000542002 ARMT1Q9H993 441 aa11.79□□□□□ -0.52
YBX3-212ENST00000542002 CSADQ9Y600 493 aa11.79□□□□□ -0.52
YBX3-212ENST00000542002 MANSC4A6NHS7 340 aaPredicted RBP11.78□□□□□ -0.52
YBX3-212ENST00000542002 SMIM22K7EJ46 135 aa11.78□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms