RNA–Protein interactions for RNA: ENST00000540925.5

USP28-209, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 4

Gene USP28, Length 561 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-209ENST00000540925 CNKSR2Q8WXI2 1034 aa17.35■□□□□ 0.37
USP28-209ENST00000540925 OPTNQ96CV9 577 aa17.35■□□□□ 0.37
USP28-209ENST00000540925 ABHD8Q96I13 439 aa17.35■□□□□ 0.37
USP28-209ENST00000540925 MS4A4AQ96JQ5 239 aa17.35■□□□□ 0.37
USP28-209ENST00000540925 WRNIP1Q96S55 665 aa17.35■□□□□ 0.37
USP28-209ENST00000540925 ZNF341Q9BYN7 854 aa17.35■□□□□ 0.37
USP28-209ENST00000540925 ANTXR1Q9H6X2 564 aa17.35■□□□□ 0.37
USP28-209ENST00000540925 DCTPP1Q9H773 170 aa17.35■□□□□ 0.37
USP28-209ENST00000540925 NDUFB9Q9Y6M9 179 aa17.35■□□□□ 0.37
USP28-209ENST00000540925 DDTLA6NHG4 134 aaPredicted RBP17.34■□□□□ 0.37
USP28-209ENST00000540925 SPDYE5A6NIY4 337 aa17.34■□□□□ 0.37
USP28-209ENST00000540925 PHF20L1A8MW92 1017 aa17.34■□□□□ 0.37
USP28-209ENST00000540925 APBB1O00213 710 aa17.34■□□□□ 0.37
USP28-209ENST00000540925 INHBEP58166 350 aa17.34■□□□□ 0.37
USP28-209ENST00000540925 NAA16Q6N069 864 aaPredicted RBP17.34■□□□□ 0.37
USP28-209ENST00000540925 ZKSCAN4Q969J2 545 aaPredicted RBP17.34■□□□□ 0.37
USP28-209ENST00000540925 FOCADQ5VW36 1801 aa17.33■□□□□ 0.37
USP28-209ENST00000540925 IGF2BP3O00425 579 aaKnown RBP eCLIP17.33■□□□□ 0.36
USP28-209ENST00000540925 IFIT2P09913 472 aaKnown RBP17.33■□□□□ 0.36
USP28-209ENST00000540925 NOM1Q5C9Z4 860 aaKnown RBP17.33■□□□□ 0.36
USP28-209ENST00000540925 NOL9Q5SY16 702 aaKnown RBP17.33■□□□□ 0.36
USP28-209ENST00000540925 TMED8Q6PL24 325 aaPredicted RBP17.33■□□□□ 0.36
USP28-209ENST00000540925 SH3RF3Q8TEJ3 882 aaPredicted RBP17.33■□□□□ 0.36
USP28-209ENST00000540925 LRRCC1Q9C099 1032 aa17.33■□□□□ 0.36
USP28-209ENST00000540925 CSADQ9Y600 493 aa17.33■□□□□ 0.36
USP28-209ENST00000540925 CASP8AP2Q9UKL3 1982 aa17.33■□□□□ 0.36
USP28-209ENST00000540925 CDK5RAP2Q96SN8 1893 aa17.33■□□□□ 0.36
USP28-209ENST00000540925 INPP5BP32019 993 aa17.32■□□□□ 0.36
USP28-209ENST00000540925 IFNL1Q8IU54 200 aa17.32■□□□□ 0.36
USP28-209ENST00000540925 PTPN18Q99952 460 aa17.32■□□□□ 0.36
USP28-209ENST00000540925 ATP5JP18859 108 aa17.31■□□□□ 0.36
USP28-209ENST00000540925 PICALMQ13492 652 aa17.31■□□□□ 0.36
USP28-209ENST00000540925 ERO1BQ86YB8 467 aa17.31■□□□□ 0.36
USP28-209ENST00000540925 CRBNQ96SW2 442 aa17.31■□□□□ 0.36
USP28-209ENST00000540925 OSBPL5Q9H0X9 879 aaPredicted RBP17.31■□□□□ 0.36
USP28-209ENST00000540925 R3HDMLQ9H3Y0 253 aa17.31■□□□□ 0.36
USP28-209ENST00000540925 AATFQ9NY61 560 aaKnown RBP eCLIP17.31■□□□□ 0.36
USP28-209ENST00000540925 SIPA1L1O43166 1804 aa17.31■□□□□ 0.36
USP28-209ENST00000540925 HTTP42858 3142 aa17.3■□□□□ 0.36
USP28-209ENST00000540925 AK9Q5TCS8 1911 aa17.3■□□□□ 0.36
USP28-209ENST00000540925 SMARCA5O60264 1052 aaPredicted RBP17.3■□□□□ 0.36
USP28-209ENST00000540925 TBC1D12O60347 775 aa17.3■□□□□ 0.36
USP28-209ENST00000540925 IDH1O75874 414 aaKnown RBP17.3■□□□□ 0.36
USP28-209ENST00000540925 SLURP2P0DP57 97 aa17.3■□□□□ 0.36
USP28-209ENST00000540925 PLCG2P16885 1265 aa17.3■□□□□ 0.36
USP28-209ENST00000540925 TEX11Q8IYF3 940 aa17.3■□□□□ 0.36
USP28-209ENST00000540925 BRI3BPQ8WY22 251 aa17.3■□□□□ 0.36
USP28-209ENST00000540925 PCDH10Q9P2E7 1040 aa17.3■□□□□ 0.36
USP28-209ENST00000540925 TBC1D8O95759 1140 aa17.29■□□□□ 0.36
USP28-209ENST00000540925 BAG3O95817 575 aa17.29■□□□□ 0.36
USP28-209ENST00000540925 ALDH1A1P00352 501 aa17.29■□□□□ 0.36
USP28-209ENST00000540925 CYP7A1P22680 504 aa17.29■□□□□ 0.36
USP28-209ENST00000540925 PPATQ06203 517 aa17.29■□□□□ 0.36
USP28-209ENST00000540925 PPIL2Q13356 520 aa17.29■□□□□ 0.36
USP28-209ENST00000540925 METTL16Q86W50 562 aaKnown RBP17.29■□□□□ 0.36
USP28-209ENST00000540925 OTUD5Q96G74 571 aa17.29■□□□□ 0.36
USP28-209ENST00000540925 FLT1P17948 1338 aa17.28■□□□□ 0.36
USP28-209ENST00000540925 TCRBV5S4A2TA0A5A2 114 aa17.28■□□□□ 0.36
USP28-209ENST00000540925 IRF6O14896 467 aa17.28■□□□□ 0.36
USP28-209ENST00000540925 TNRC18O15417 2968 aaPredicted RBP17.28■□□□□ 0.36
USP28-209ENST00000540925 GTF2A2P52657 109 aa17.28■□□□□ 0.36
USP28-209ENST00000540925 MAP3K12Q12852 859 aa17.28■□□□□ 0.36
USP28-209ENST00000540925 TTF1Q15361 905 aaPredicted RBP17.28■□□□□ 0.36
USP28-209ENST00000540925 MAGEB6Q8N7X4 407 aa17.28■□□□□ 0.36
USP28-209ENST00000540925 HAUS7Q99871 368 aa17.28■□□□□ 0.36
USP28-209ENST00000540925 RIOK1Q9BRS2 568 aaKnown RBP17.28■□□□□ 0.36
USP28-209ENST00000540925 ZBTB4Q9P1Z0 1013 aaPredicted RBP17.28■□□□□ 0.36
USP28-209ENST00000540925 KCNH4Q9UQ05 1017 aa17.28■□□□□ 0.36
USP28-209ENST00000540925 GOLIM4O00461 696 aa17.27■□□□□ 0.36
USP28-209ENST00000540925 RGS19P49795 217 aa17.27■□□□□ 0.36
USP28-209ENST00000540925 DYNLL1P63167 89 aaKnown RBP17.27■□□□□ 0.36
USP28-209ENST00000540925 ZSCAN29Q8IWY8 852 aaPredicted RBP17.27■□□□□ 0.36
USP28-209ENST00000540925 EDC3Q96F86 508 aaKnown RBP17.27■□□□□ 0.36
USP28-209ENST00000540925 NOL10Q9BSC4 688 aaKnown RBP17.27■□□□□ 0.36
USP28-209ENST00000540925 CCL15-CCL14A0A0B4J2E2 113 aa17.26■□□□□ 0.35
USP28-209ENST00000540925 GPR25O00155 361 aa17.26■□□□□ 0.35
USP28-209ENST00000540925 PDE6AP16499 860 aa17.26■□□□□ 0.35
USP28-209ENST00000540925 MOGSQ13724 837 aa17.26■□□□□ 0.35
USP28-209ENST00000540925 CCL15Q16663 113 aa17.26■□□□□ 0.35
USP28-209ENST00000540925 CERS3Q8IU89 383 aa17.26■□□□□ 0.35
USP28-209ENST00000540925 SCYL3Q8IZE3 742 aa17.26■□□□□ 0.35
USP28-209ENST00000540925 TGFBRAP1Q8WUH2 860 aa17.26■□□□□ 0.35
USP28-209ENST00000540925 DNAJC2Q99543 621 aaKnown RBP17.26■□□□□ 0.35
USP28-209ENST00000540925 BOLA2Q9H3K6 86 aa17.26■□□□□ 0.35
USP28-209ENST00000540925 PAG1Q9NWQ8 432 aa17.26■□□□□ 0.35
USP28-209ENST00000540925 DDX60LQ5H9U9 1706 aaKnown RBP17.26■□□□□ 0.35
USP28-209ENST00000540925 DOCK1Q14185 1865 aa17.26■□□□□ 0.35
USP28-209ENST00000540925 PHIPQ8WWQ0 1821 aa17.26■□□□□ 0.35
USP28-209ENST00000540925 CTNND1O60716 968 aaKnown RBP17.25■□□□□ 0.35
USP28-209ENST00000540925 MLLT1Q03111 559 aaPredicted RBP17.25■□□□□ 0.35
USP28-209ENST00000540925 HDAC1Q13547 482 aaPredicted RBP17.25■□□□□ 0.35
USP28-209ENST00000540925 AAMPQ13685 434 aa17.25■□□□□ 0.35
USP28-209ENST00000540925 MIGA1Q8NAN2 632 aa17.25■□□□□ 0.35
USP28-209ENST00000540925 ZNF296Q8WUU4 475 aaPredicted RBP17.25■□□□□ 0.35
USP28-209ENST00000540925 DHX36Q9H2U1 1008 aaKnown RBP17.25■□□□□ 0.35
USP28-209ENST00000540925 DNAJC18Q9H819 358 aa17.25■□□□□ 0.35
USP28-209ENST00000540925 FAM196BA6NMK8 535 aa17.24■□□□□ 0.35
USP28-209ENST00000540925 CETPP11597 493 aa17.24■□□□□ 0.35
USP28-209ENST00000540925 PTPRAP18433 802 aa17.24■□□□□ 0.35
USP28-209ENST00000540925 CRHR2Q13324 411 aa17.24■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms