RNA–Protein interactions for RNA: ENST00000527326.1

CD44-225, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 718 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-225ENST00000527326 VPS18Q9P253 973 aa6.68□□□□□ -1.34
CD44-225ENST00000527326 DNAI1Q9UI46 699 aa6.68□□□□□ -1.34
CD44-225ENST00000527326 ATP6V1DQ9Y5K8 247 aa6.68□□□□□ -1.34
CD44-225ENST00000527326 ITSN2Q9NZM3 1697 aa6.68□□□□□ -1.34
CD44-225ENST00000527326 CCDC151A5D8V7 595 aa6.67□□□□□ -1.34
CD44-225ENST00000527326 ERLIN1O75477 346 aa6.67□□□□□ -1.34
CD44-225ENST00000527326 SKILP12757 684 aa6.67□□□□□ -1.34
CD44-225ENST00000527326 CTSOP43234 321 aaPredicted RBP6.67□□□□□ -1.34
CD44-225ENST00000527326 RAB27AP51159 221 aa6.67□□□□□ -1.34
CD44-225ENST00000527326 CLNS1AP54105 237 aaKnown RBP6.67□□□□□ -1.34
CD44-225ENST00000527326 APOBRQ0VD83 1088 aa6.67□□□□□ -1.34
CD44-225ENST00000527326 SF3B2Q13435 895 aaKnown RBP6.67□□□□□ -1.34
CD44-225ENST00000527326 IRF5Q13568 498 aa6.67□□□□□ -1.34
CD44-225ENST00000527326 PLCB4Q15147 1175 aa6.67□□□□□ -1.34
CD44-225ENST00000527326 HSP90B2PQ58FF3 399 aa6.67□□□□□ -1.34
CD44-225ENST00000527326 CWC27Q6UX04 472 aaKnown RBP6.67□□□□□ -1.34
CD44-225ENST00000527326 HDXQ7Z353 690 aa6.67□□□□□ -1.34
CD44-225ENST00000527326 BRAPQ7Z569 592 aa6.67□□□□□ -1.34
CD44-225ENST00000527326 SDCCAG8Q86SQ7 713 aaPredicted RBP6.67□□□□□ -1.34
CD44-225ENST00000527326 KCTD17Q8N5Z5 321 aa6.67□□□□□ -1.34
CD44-225ENST00000527326 RABGGTAQ92696 567 aa6.67□□□□□ -1.34
CD44-225ENST00000527326 SAAL1Q96ER3 474 aa6.67□□□□□ -1.34
CD44-225ENST00000527326 THOC1Q96FV9 657 aaKnown RBP6.67□□□□□ -1.34
CD44-225ENST00000527326 MRFAP1L1Q96HT8 127 aa6.67□□□□□ -1.34
CD44-225ENST00000527326 POLMQ9NP87 494 aaPredicted RBP6.67□□□□□ -1.34
CD44-225ENST00000527326 PZPP20742 1482 aa6.66□□□□□ -1.34
CD44-225ENST00000527326 H3BQF6 201 aa6.66□□□□□ -1.34
CD44-225ENST00000527326 H7C1W4 665 aa6.66□□□□□ -1.34
CD44-225ENST00000527326 ERVH48-1M5A8F1 160 aa6.66□□□□□ -1.34
CD44-225ENST00000527326 EBAG9O00559 213 aa6.66□□□□□ -1.34
CD44-225ENST00000527326 SOCS7O14512 581 aa6.66□□□□□ -1.34
CD44-225ENST00000527326 GADD45BO75293 160 aaPredicted RBP6.66□□□□□ -1.34
CD44-225ENST00000527326 SEC31AO94979 1220 aaKnown RBP6.66□□□□□ -1.34
CD44-225ENST00000527326 FSBPO95073 299 aa6.66□□□□□ -1.34
CD44-225ENST00000527326 FAM163BP0C2L3 166 aa6.66□□□□□ -1.34
CD44-225ENST00000527326 EZRP15311 586 aaKnown RBP6.66□□□□□ -1.34
CD44-225ENST00000527326 POLD1P28340 1107 aa6.66□□□□□ -1.34
CD44-225ENST00000527326 LIG3P49916 1009 aa6.66□□□□□ -1.34
CD44-225ENST00000527326 SFSWAPQ12872 951 aaKnown RBP6.66□□□□□ -1.34
CD44-225ENST00000527326 HHATQ5VTY9 493 aa6.66□□□□□ -1.34
CD44-225ENST00000527326 INTS3Q68E01 1043 aaKnown RBP6.66□□□□□ -1.34
CD44-225ENST00000527326 CDCA2Q69YH5 1023 aaPredicted RBP6.66□□□□□ -1.34
CD44-225ENST00000527326 ISM2Q6H9L7 571 aa6.66□□□□□ -1.34
CD44-225ENST00000527326 FOXR1Q6PIV2 292 aa6.66□□□□□ -1.34
CD44-225ENST00000527326 DNAJC14Q6Y2X3 702 aaPredicted RBP6.66□□□□□ -1.34
CD44-225ENST00000527326 DDX46Q7L014 1031 aaKnown RBP6.66□□□□□ -1.34
CD44-225ENST00000527326 MFN1Q8IWA4 741 aa6.66□□□□□ -1.34
CD44-225ENST00000527326 NBPF15Q8N660 670 aa6.66□□□□□ -1.34
CD44-225ENST00000527326 CCDC155Q8N6L0 562 aa6.66□□□□□ -1.34
CD44-225ENST00000527326 MAB21L3Q8N8X9 362 aa6.66□□□□□ -1.34
CD44-225ENST00000527326 ZNF784Q8NCA9 323 aaPredicted RBP6.66□□□□□ -1.34
CD44-225ENST00000527326 MIPOL1Q8TD10 442 aa6.66□□□□□ -1.34
CD44-225ENST00000527326 GLMNQ92990 594 aa6.66□□□□□ -1.34
CD44-225ENST00000527326 CCDC34Q96HJ3 373 aa6.66□□□□□ -1.34
CD44-225ENST00000527326 ZNF396Q96N95 335 aaPredicted RBP6.66□□□□□ -1.34
CD44-225ENST00000527326 IQCGQ9H095 443 aaKnown RBP6.66□□□□□ -1.34
CD44-225ENST00000527326 GBP3Q9H0R5 595 aa6.66□□□□□ -1.34
CD44-225ENST00000527326 ATP6V0A4Q9HBG4 840 aa6.66□□□□□ -1.34
CD44-225ENST00000527326 BLOC1S6Q9UL45 172 aa6.66□□□□□ -1.34
CD44-225ENST00000527326 RTL1A6NKG5 1358 aa6.66□□□□□ -1.34
CD44-225ENST00000527326 A6NNZ2 444 aa6.65□□□□□ -1.34
CD44-225ENST00000527326 APAF1O14727 1248 aa6.65□□□□□ -1.34
CD44-225ENST00000527326 NPHP1O15259 732 aa6.65□□□□□ -1.34
CD44-225ENST00000527326 AHCYL1O43865 530 aa6.65□□□□□ -1.34
CD44-225ENST00000527326 TUBBP07437 444 aa6.65□□□□□ -1.34
CD44-225ENST00000527326 ARHGAP25P42331 645 aa6.65□□□□□ -1.34
CD44-225ENST00000527326 EVCP57679 992 aa6.65□□□□□ -1.34
CD44-225ENST00000527326 MYBPC2Q14324 1141 aa6.65□□□□□ -1.34
CD44-225ENST00000527326 MAP3K11Q16584 847 aa6.65□□□□□ -1.34
CD44-225ENST00000527326 LONRF2Q1L5Z9 754 aa6.65□□□□□ -1.34
CD44-225ENST00000527326 TUBB8Q3ZCM7 444 aa6.65□□□□□ -1.34
CD44-225ENST00000527326 PLEKHO1Q53GL0 409 aaPredicted RBP6.65□□□□□ -1.34
CD44-225ENST00000527326 EXOC8Q8IYI6 725 aa6.65□□□□□ -1.34
CD44-225ENST00000527326 SDR16C5Q8N3Y7 309 aa6.65□□□□□ -1.34
CD44-225ENST00000527326 CCDC150Q8NCX0 1101 aa6.65□□□□□ -1.34
CD44-225ENST00000527326 CNNM3Q8NE01 707 aa6.65□□□□□ -1.34
CD44-225ENST00000527326 DTNBP1Q96EV8 351 aa6.65□□□□□ -1.34
CD44-225ENST00000527326 XAGE2Q96GT9 111 aa6.65□□□□□ -1.34
CD44-225ENST00000527326 RSRC1Q96IZ7 334 aaKnown RBP6.65□□□□□ -1.34
CD44-225ENST00000527326 PLEKHG4BQ96PX9 1271 aa6.65□□□□□ -1.34
CD44-225ENST00000527326 OSBPL9Q96SU4 736 aa6.65□□□□□ -1.34
CD44-225ENST00000527326 LZTS2Q9BRK4 669 aa6.65□□□□□ -1.34
CD44-225ENST00000527326 MAF1Q9H063 256 aa6.65□□□□□ -1.34
CD44-225ENST00000527326 IMPACTQ9P2X3 320 aa6.65□□□□□ -1.34
CD44-225ENST00000527326 ZNF232Q9UNY5 417 aa6.65□□□□□ -1.34
CD44-225ENST00000527326 FAM169AQ9Y6X4 670 aa6.65□□□□□ -1.34
CD44-225ENST00000527326 POLR3AO14802 1390 aaPredicted RBP6.65□□□□□ -1.35
CD44-225ENST00000527326 CARMIL1Q5VZK9 1371 aa6.65□□□□□ -1.35
CD44-225ENST00000527326 MYOM2P54296 1465 aa6.65□□□□□ -1.35
CD44-225ENST00000527326 SHANK2Q9UPX8 1470 aa6.65□□□□□ -1.35
CD44-225ENST00000527326 WDR7Q9Y4E6 1490 aa6.65□□□□□ -1.35
CD44-225ENST00000527326 ASXL1Q8IXJ9 1541 aa6.65□□□□□ -1.35
CD44-225ENST00000527326 KIAA0556O60303 1618 aa6.65□□□□□ -1.35
CD44-225ENST00000527326 TRPM1Q7Z4N2 1603 aa6.65□□□□□ -1.35
CD44-225ENST00000527326 SHTN1A0MZ66 631 aa6.64□□□□□ -1.35
CD44-225ENST00000527326 GOLGA6CA6NDK9 693 aa6.64□□□□□ -1.35
CD44-225ENST00000527326 GOLGA6BA6NDN3 693 aa6.64□□□□□ -1.35
CD44-225ENST00000527326 CCDC69A6NI79 296 aa6.64□□□□□ -1.35
CD44-225ENST00000527326 USP27XA6NNY8 438 aa6.64□□□□□ -1.35
CD44-225ENST00000527326 PDLIM1O00151 329 aa6.64□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 9.5 ms