RNA–Protein interactions for RNA: ENST00000523488.5

CSMD1-213, Transcript of CUB and Sushi multiple domains 1, humanhuman

TSL 1 (best)

Gene CSMD1, Length 3,714 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD1-213ENST00000523488 IFNKQ9P0W0 207 aa9.57□□□□□ -0.88
CSMD1-213ENST00000523488 PCDHA7Q9UN72 937 aa9.57□□□□□ -0.88
CSMD1-213ENST00000523488 FLT4P35916 1363 aa9.57□□□□□ -0.88
CSMD1-213ENST00000523488 LAMB1P07942 1786 aa9.57□□□□□ -0.88
CSMD1-213ENST00000523488 A0A0G2JS52 829 aa9.57□□□□□ -0.88
CSMD1-213ENST00000523488 SASH1O94885 1247 aa9.57□□□□□ -0.88
CSMD1-213ENST00000523488 LACTB2Q53H82 288 aaPredicted RBP9.57□□□□□ -0.88
CSMD1-213ENST00000523488 CNNM3Q8NE01 707 aa9.57□□□□□ -0.88
CSMD1-213ENST00000523488 CCDC51Q96ER9 411 aa9.57□□□□□ -0.88
CSMD1-213ENST00000523488 PSMD14O00487 310 aa9.57□□□□□ -0.88
CSMD1-213ENST00000523488 N4BP1O75113 896 aaKnown RBP9.57□□□□□ -0.88
CSMD1-213ENST00000523488 SLC4A2P04920 1241 aa9.57□□□□□ -0.88
CSMD1-213ENST00000523488 SMTNP53814 917 aa9.57□□□□□ -0.88
CSMD1-213ENST00000523488 SCRN1Q12765 414 aa9.57□□□□□ -0.88
CSMD1-213ENST00000523488 LRCH2Q5VUJ6 765 aa9.57□□□□□ -0.88
CSMD1-213ENST00000523488 PRPF40BQ6NWY9 871 aaKnown RBP9.57□□□□□ -0.88
CSMD1-213ENST00000523488 TEX13AQ9BXU3 409 aaPredicted RBP9.57□□□□□ -0.88
CSMD1-213ENST00000523488 ABCB6Q9NP58 842 aa9.57□□□□□ -0.88
CSMD1-213ENST00000523488 ADGRG1Q9Y653 693 aa9.57□□□□□ -0.88
CSMD1-213ENST00000523488 LIN7AO14910 233 aaPredicted RBP9.56□□□□□ -0.88
CSMD1-213ENST00000523488 EIF3HO15372 352 aaKnown RBP eCLIP9.56□□□□□ -0.88
CSMD1-213ENST00000523488 SLC8A3P57103 927 aa9.56□□□□□ -0.88
CSMD1-213ENST00000523488 IRX1P78414 480 aaPredicted RBP9.56□□□□□ -0.88
CSMD1-213ENST00000523488 STK3Q13188 491 aa9.56□□□□□ -0.88
CSMD1-213ENST00000523488 PTPAQ15257 358 aa9.56□□□□□ -0.88
CSMD1-213ENST00000523488 ANKRD18AQ8IVF6 992 aa9.56□□□□□ -0.88
CSMD1-213ENST00000523488 DPF2Q92785 391 aa9.56□□□□□ -0.88
CSMD1-213ENST00000523488 ZKSCAN4Q969J2 545 aaPredicted RBP9.56□□□□□ -0.88
CSMD1-213ENST00000523488 RPGRIP1Q96KN7 1286 aa9.56□□□□□ -0.88
CSMD1-213ENST00000523488 MED15Q96RN5 788 aa9.56□□□□□ -0.88
CSMD1-213ENST00000523488 PLEKHA4Q9H4M7 779 aa9.56□□□□□ -0.88
CSMD1-213ENST00000523488 MROH7-TTC4A0A0A0MT08 1334 aa9.56□□□□□ -0.88
CSMD1-213ENST00000523488 LRRC10BA6NIK2 292 aa9.56□□□□□ -0.88
CSMD1-213ENST00000523488 GCFC2P16383 781 aaKnown RBP9.56□□□□□ -0.88
CSMD1-213ENST00000523488 CHMP4BP1P59074 171 aa9.56□□□□□ -0.88
CSMD1-213ENST00000523488 NNTQ13423 1086 aa9.56□□□□□ -0.88
CSMD1-213ENST00000523488 ZKSCAN8Q15776 578 aaPredicted RBP9.56□□□□□ -0.88
CSMD1-213ENST00000523488 CMPK2Q5EBM0 449 aa9.56□□□□□ -0.88
CSMD1-213ENST00000523488 TTLL7Q6ZT98 887 aa9.56□□□□□ -0.88
CSMD1-213ENST00000523488 USP28Q96RU2 1077 aa9.56□□□□□ -0.88
CSMD1-213ENST00000523488 MAP3K14Q99558 947 aa9.56□□□□□ -0.88
CSMD1-213ENST00000523488 ECHDC1Q9NTX5 307 aa9.56□□□□□ -0.88
CSMD1-213ENST00000523488 C5orf60A6NFR6 353 aa9.56□□□□□ -0.88
CSMD1-213ENST00000523488 FDPSP14324 419 aaKnown RBP9.56□□□□□ -0.88
CSMD1-213ENST00000523488 LIG3P49916 1009 aa9.56□□□□□ -0.88
CSMD1-213ENST00000523488 CCNG1P51959 295 aa9.56□□□□□ -0.88
CSMD1-213ENST00000523488 USP14P54578 494 aa9.56□□□□□ -0.88
CSMD1-213ENST00000523488 PPP2R5AQ15172 486 aa9.56□□□□□ -0.88
CSMD1-213ENST00000523488 CDKAL1Q5VV42 579 aa9.56□□□□□ -0.88
CSMD1-213ENST00000523488 MREGQ8N565 214 aa9.56□□□□□ -0.88
CSMD1-213ENST00000523488 KCNG4Q8TDN1 519 aa9.56□□□□□ -0.88
CSMD1-213ENST00000523488 MRPL44Q9H9J2 332 aaKnown RBP9.56□□□□□ -0.88
CSMD1-213ENST00000523488 MYH6P13533 1939 aa9.55□□□□□ -0.88
CSMD1-213ENST00000523488 A0A087WWV3 80 aa9.55□□□□□ -0.88
CSMD1-213ENST00000523488 H7C1W4 665 aa9.55□□□□□ -0.88
CSMD1-213ENST00000523488 BMP6P22004 513 aa9.55□□□□□ -0.88
CSMD1-213ENST00000523488 RESP18Q5W5W9 173 aa9.55□□□□□ -0.88
CSMD1-213ENST00000523488 COG1Q8WTW3 980 aa9.55□□□□□ -0.88
CSMD1-213ENST00000523488 ERCC4Q92889 916 aaPredicted RBP9.55□□□□□ -0.88
CSMD1-213ENST00000523488 BRF1Q92994 677 aa9.55□□□□□ -0.88
CSMD1-213ENST00000523488 CAVIN3Q969G5 261 aa9.55□□□□□ -0.88
CSMD1-213ENST00000523488 CABP1Q9NZU7 370 aa9.55□□□□□ -0.88
CSMD1-213ENST00000523488 TAF6LQ9Y6J9 622 aa9.55□□□□□ -0.88
CSMD1-213ENST00000523488 TOGARAM1Q9Y4F4 1720 aa9.55□□□□□ -0.88
CSMD1-213ENST00000523488 VSNL1P62760 191 aa9.55□□□□□ -0.88
CSMD1-213ENST00000523488 TOGARAM2Q6ZUX3 1019 aa9.55□□□□□ -0.88
CSMD1-213ENST00000523488 PDILTQ8N807 584 aa9.55□□□□□ -0.88
CSMD1-213ENST00000523488 TRIML1Q8N9V2 468 aa9.55□□□□□ -0.88
CSMD1-213ENST00000523488 ENOX1Q8TC92 643 aaKnown RBP9.55□□□□□ -0.88
CSMD1-213ENST00000523488 ZNF396Q96N95 335 aaPredicted RBP9.55□□□□□ -0.88
CSMD1-213ENST00000523488 VCPKMTQ9H867 229 aa9.55□□□□□ -0.88
CSMD1-213ENST00000523488 IRAK1P51617 712 aa9.55□□□□□ -0.88
CSMD1-213ENST00000523488 FOSBP53539 338 aa9.55□□□□□ -0.88
CSMD1-213ENST00000523488 OS9Q13438 667 aaPredicted RBP9.55□□□□□ -0.88
CSMD1-213ENST00000523488 DCTN1Q14203 1278 aa9.55□□□□□ -0.88
CSMD1-213ENST00000523488 EIF1ADQ8N9N8 165 aaKnown RBP9.55□□□□□ -0.88
CSMD1-213ENST00000523488 ADAMTS13Q76LX8 1427 aa9.55□□□□□ -0.88
CSMD1-213ENST00000523488 PDLIM1O00151 329 aa9.54□□□□□ -0.88
CSMD1-213ENST00000523488 SERPINC1P01008 464 aa9.54□□□□□ -0.88
CSMD1-213ENST00000523488 HMGB1P09429 215 aaKnown RBP9.54□□□□□ -0.88
CSMD1-213ENST00000523488 PAEPP09466 180 aa9.54□□□□□ -0.88
CSMD1-213ENST00000523488 ALADP13716 330 aa9.54□□□□□ -0.88
CSMD1-213ENST00000523488 HSP90B1P14625 803 aaKnown RBP9.54□□□□□ -0.88
CSMD1-213ENST00000523488 MCM3P25205 808 aa9.54□□□□□ -0.88
CSMD1-213ENST00000523488 NDUFA8P51970 172 aa9.54□□□□□ -0.88
CSMD1-213ENST00000523488 MYL5Q02045 173 aa9.54□□□□□ -0.88
CSMD1-213ENST00000523488 PPFIA1Q13136 1202 aa9.54□□□□□ -0.88
CSMD1-213ENST00000523488 SF3A1Q15459 793 aaKnown RBP9.54□□□□□ -0.88
CSMD1-213ENST00000523488 NUTM2GQ5VZR2 741 aa9.54□□□□□ -0.88
CSMD1-213ENST00000523488 ME1P48163 572 aa9.54□□□□□ -0.88
CSMD1-213ENST00000523488 RCSD1Q6JBY9 416 aa9.54□□□□□ -0.88
CSMD1-213ENST00000523488 CCDC12Q8WUD4 166 aaPredicted RBP9.54□□□□□ -0.88
CSMD1-213ENST00000523488 KCNMB3Q9NPA1 279 aa9.54□□□□□ -0.88
CSMD1-213ENST00000523488 F6X3S4 739 aa9.54□□□□□ -0.88
CSMD1-213ENST00000523488 WASLO00401 505 aaPredicted RBP9.54□□□□□ -0.88
CSMD1-213ENST00000523488 EBAG9O00559 213 aa9.54□□□□□ -0.88
CSMD1-213ENST00000523488 PPP1R42Q7Z4L9 355 aa9.54□□□□□ -0.88
CSMD1-213ENST00000523488 FAM228AQ86W67 206 aa9.54□□□□□ -0.88
CSMD1-213ENST00000523488 SGSM3Q96HU1 749 aa9.54□□□□□ -0.88
CSMD1-213ENST00000523488 ATP6V0A4Q9HBG4 840 aa9.54□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms