RNA–Protein interactions for RNA: ENST00000507293.1

HMGCS1-204, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

TSL 1 (best)

Gene HMGCS1, Length 708 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-204ENST00000507293 SCYL3Q8IZE3 742 aa14.26□□□□□ -0.13
HMGCS1-204ENST00000507293 FAM163AQ96GL9 167 aaPredicted RBP14.26□□□□□ -0.13
HMGCS1-204ENST00000507293 ZNF333Q96JL9 665 aa14.26□□□□□ -0.13
HMGCS1-204ENST00000507293 DDX4Q9NQI0 724 aaKnown RBP14.26□□□□□ -0.13
HMGCS1-204ENST00000507293 HMG20BQ9P0W2 317 aa14.26□□□□□ -0.13
HMGCS1-204ENST00000507293 CPA4Q9UI42 421 aa14.26□□□□□ -0.13
HMGCS1-204ENST00000507293 CDK5RAP2Q96SN8 1893 aa14.26□□□□□ -0.13
HMGCS1-204ENST00000507293 MYO5AQ9Y4I1 1855 aaKnown RBP14.26□□□□□ -0.13
HMGCS1-204ENST00000507293 ADGRA2Q96PE1 1338 aa14.25□□□□□ -0.13
HMGCS1-204ENST00000507293 DDTLA6NHG4 134 aaPredicted RBP14.25□□□□□ -0.13
HMGCS1-204ENST00000507293 PHF20L1A8MW92 1017 aa14.25□□□□□ -0.13
HMGCS1-204ENST00000507293 SLURP2P0DP57 97 aa14.25□□□□□ -0.13
HMGCS1-204ENST00000507293 MECOMQ03112 1051 aa14.25□□□□□ -0.13
HMGCS1-204ENST00000507293 PICALMQ13492 652 aa14.25□□□□□ -0.13
HMGCS1-204ENST00000507293 MOGSQ13724 837 aa14.25□□□□□ -0.13
HMGCS1-204ENST00000507293 GORABQ5T7V8 394 aa14.25□□□□□ -0.13
HMGCS1-204ENST00000507293 C17orf99Q6UX52 265 aa14.25□□□□□ -0.13
HMGCS1-204ENST00000507293 PI16Q6UXB8 463 aa14.25□□□□□ -0.13
HMGCS1-204ENST00000507293 TMEM57Q8N5G2 664 aa14.25□□□□□ -0.13
HMGCS1-204ENST00000507293 ZNF384Q8TF68 577 aa14.25□□□□□ -0.13
HMGCS1-204ENST00000507293 FOCADQ5VW36 1801 aa14.25□□□□□ -0.13
HMGCS1-204ENST00000507293 GPR75-ASB3A0A0A6YYF3 556 aa14.24□□□□□ -0.13
HMGCS1-204ENST00000507293 EN2P19622 333 aaPredicted RBP14.24□□□□□ -0.13
HMGCS1-204ENST00000507293 ARID4AP29374 1257 aaPredicted RBP14.24□□□□□ -0.13
HMGCS1-204ENST00000507293 RHBDL3P58872 404 aa14.24□□□□□ -0.13
HMGCS1-204ENST00000507293 G3BP1Q13283 466 aaKnown RBP eCLIP14.24□□□□□ -0.138e-8■□□□□ 9.2
HMGCS1-204ENST00000507293 ZKSCAN2Q63HK3 967 aa14.24□□□□□ -0.13
HMGCS1-204ENST00000507293 TBC1D9Q6ZT07 1266 aa14.24□□□□□ -0.13
HMGCS1-204ENST00000507293 SPATA5Q8NB90 893 aa14.24□□□□□ -0.13
HMGCS1-204ENST00000507293 TMEM106CQ9BVX2 250 aa14.24□□□□□ -0.13
HMGCS1-204ENST00000507293 PICK1Q9NRD5 415 aa14.24□□□□□ -0.13
HMGCS1-204ENST00000507293 HTTP42858 3142 aa14.24□□□□□ -0.13
HMGCS1-204ENST00000507293 SIPA1L1O43166 1804 aa14.23□□□□□ -0.13
HMGCS1-204ENST00000507293 CXCL11O14625 94 aa14.23□□□□□ -0.13
HMGCS1-204ENST00000507293 MYCP01106 439 aaPredicted RBP14.23□□□□□ -0.13
HMGCS1-204ENST00000507293 PTPRAP18433 802 aa14.23□□□□□ -0.13
HMGCS1-204ENST00000507293 CTGFP29279 349 aa14.23□□□□□ -0.13
HMGCS1-204ENST00000507293 NBPF11Q86T75 865 aa14.23□□□□□ -0.13
HMGCS1-204ENST00000507293 SH3TC2Q8TF17 1288 aa14.23□□□□□ -0.13
HMGCS1-204ENST00000507293 LOC285556D6RIA3 1793 aa14.22□□□□□ -0.13
HMGCS1-204ENST00000507293 GNRH1P01148 92 aa14.22□□□□□ -0.13
HMGCS1-204ENST00000507293 UQCRFS1P1P0C7P4 283 aa14.22□□□□□ -0.13
HMGCS1-204ENST00000507293 MCAMP43121 646 aa14.22□□□□□ -0.13
HMGCS1-204ENST00000507293 PSMC4P43686 418 aa14.22□□□□□ -0.13
HMGCS1-204ENST00000507293 PRMT2P55345 433 aa14.22□□□□□ -0.13
HMGCS1-204ENST00000507293 GSTO1P78417 241 aa14.22□□□□□ -0.13
HMGCS1-204ENST00000507293 HNRNPUQ00839 825 aaKnown RBP eCLIP14.22□□□□□ -0.13
HMGCS1-204ENST00000507293 MAP3K10Q02779 954 aa14.22□□□□□ -0.13
HMGCS1-204ENST00000507293 SLC4A8Q2Y0W8 1093 aa14.22□□□□□ -0.13
HMGCS1-204ENST00000507293 GPAT2Q6NUI2 795 aa14.22□□□□□ -0.13
HMGCS1-204ENST00000507293 NSUN4Q96CB9 384 aaKnown RBP14.22□□□□□ -0.13
HMGCS1-204ENST00000507293 PARK7Q99497 189 aaKnown RBP14.22□□□□□ -0.13
HMGCS1-204ENST00000507293 RAI14Q9P0K7 980 aa14.22□□□□□ -0.13
HMGCS1-204ENST00000507293 ZHX2Q9Y6X8 837 aa14.22□□□□□ -0.13
HMGCS1-204ENST00000507293 COL2A1P02458 1487 aaPredicted RBP14.21□□□□□ -0.13
HMGCS1-204ENST00000507293 A0A0G2JLL6 359 aaPredicted RBP14.21□□□□□ -0.13
HMGCS1-204ENST00000507293 LDHCP07864 332 aa14.21□□□□□ -0.13
HMGCS1-204ENST00000507293 CYP2C8P10632 490 aa14.21□□□□□ -0.13
HMGCS1-204ENST00000507293 POLA2Q14181 598 aa14.21□□□□□ -0.13
HMGCS1-204ENST00000507293 GADL1Q6ZQY3 521 aa14.21□□□□□ -0.13
HMGCS1-204ENST00000507293 PRRT2Q7Z6L0 340 aaPredicted RBP14.21□□□□□ -0.13
HMGCS1-204ENST00000507293 TRIM47Q96LD4 638 aa14.21□□□□□ -0.13
HMGCS1-204ENST00000507293 C1orf115Q9H7X2 142 aa14.21□□□□□ -0.13
HMGCS1-204ENST00000507293 FRMD4AQ9P2Q2 1039 aaPredicted RBP14.21□□□□□ -0.13
HMGCS1-204ENST00000507293 AFG3L2Q9Y4W6 797 aa14.21□□□□□ -0.13
HMGCS1-204ENST00000507293 FAM196BA6NMK8 535 aa14.2□□□□□ -0.14
HMGCS1-204ENST00000507293 CTNND1O60716 968 aaKnown RBP14.2□□□□□ -0.14
HMGCS1-204ENST00000507293 NPM3O75607 178 aaKnown RBP14.2□□□□□ -0.14
HMGCS1-204ENST00000507293 FMNL1O95466 1100 aaPredicted RBP14.2□□□□□ -0.14
HMGCS1-204ENST00000507293 OSBPP22059 807 aa14.2□□□□□ -0.14
HMGCS1-204ENST00000507293 OS9Q13438 667 aaPredicted RBP14.2□□□□□ -0.14
HMGCS1-204ENST00000507293 TNNI3KQ59H18 835 aa14.2□□□□□ -0.14
HMGCS1-204ENST00000507293 FASTKD5Q7L8L6 764 aaKnown RBP14.2□□□□□ -0.14
HMGCS1-204ENST00000507293 CCDC84Q86UT8 332 aaPredicted RBP14.2□□□□□ -0.14
HMGCS1-204ENST00000507293 DBNDD2Q9BQY9 259 aa14.2□□□□□ -0.14
HMGCS1-204ENST00000507293 LRP2BPQ9P2M1 347 aa14.2□□□□□ -0.14
HMGCS1-204ENST00000507293 SRRDQ9UH36 339 aa14.2□□□□□ -0.14
HMGCS1-204ENST00000507293 FPGT-TNNI3KV9GXZ4 949 aa14.2□□□□□ -0.14
HMGCS1-204ENST00000507293 MYPNQ86TC9 1320 aa14.19□□□□□ -0.14
HMGCS1-204ENST00000507293 TRIM75PA6NK02 468 aa14.19□□□□□ -0.14
HMGCS1-204ENST00000507293 TBC1D12O60347 775 aa14.19□□□□□ -0.14
HMGCS1-204ENST00000507293 MAP4K4O95819 1239 aaPredicted RBP14.19□□□□□ -0.14
HMGCS1-204ENST00000507293 BCRP11274 1271 aa14.19□□□□□ -0.14
HMGCS1-204ENST00000507293 HOXD10P28358 340 aa14.19□□□□□ -0.14
HMGCS1-204ENST00000507293 ATP8B2P98198 1209 aa14.19□□□□□ -0.14
HMGCS1-204ENST00000507293 TTC39AQ5SRH9 613 aa14.19□□□□□ -0.14
HMGCS1-204ENST00000507293 FTSJ3Q8IY81 847 aaKnown RBP14.19□□□□□ -0.14
HMGCS1-204ENST00000507293 MIER1Q8N108 512 aa14.19□□□□□ -0.14
HMGCS1-204ENST00000507293 SSH3Q8TE77 659 aa14.19□□□□□ -0.14
HMGCS1-204ENST00000507293 OSBPL5Q9H0X9 879 aaPredicted RBP14.19□□□□□ -0.14
HMGCS1-204ENST00000507293 XPO5Q9HAV4 1204 aaKnown RBP eCLIP14.19□□□□□ -0.14
HMGCS1-204ENST00000507293 GPR108Q9NPR9 543 aa14.19□□□□□ -0.14
HMGCS1-204ENST00000507293 SNRKQ9NRH2 765 aa14.19□□□□□ -0.14
HMGCS1-204ENST00000507293 SURF6O75683 361 aaKnown RBP14.18□□□□□ -0.14
HMGCS1-204ENST00000507293 RLBP1P12271 317 aa14.18□□□□□ -0.14
HMGCS1-204ENST00000507293 FCGRTP55899 365 aa14.18□□□□□ -0.14
HMGCS1-204ENST00000507293 ITPRIPQ8IWB1 547 aa14.18□□□□□ -0.14
HMGCS1-204ENST00000507293 TEX11Q8IYF3 940 aa14.18□□□□□ -0.14
HMGCS1-204ENST00000507293 RAET1EQ8TD07 263 aa14.18□□□□□ -0.14
HMGCS1-204ENST00000507293 SH3RF3Q8TEJ3 882 aaPredicted RBP14.18□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms