RNA–Protein interactions for RNA: ENST00000491233.1

COL6A3-211, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 3

Gene COL6A3, Length 652 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-211ENST00000491233 POLA2Q14181 598 aa16.82■□□□□ 0.28
COL6A3-211ENST00000491233 SH3BP5LQ7L8J4 393 aa16.82■□□□□ 0.28
COL6A3-211ENST00000491233 FTSJ3Q8IY81 847 aaKnown RBP16.82■□□□□ 0.28
COL6A3-211ENST00000491233 SPATA5Q8NB90 893 aa16.82■□□□□ 0.28
COL6A3-211ENST00000491233 ZNF384Q8TF68 577 aa16.82■□□□□ 0.28
COL6A3-211ENST00000491233 ARMC5Q96C12 935 aa16.82■□□□□ 0.28
COL6A3-211ENST00000491233 C1orf115Q9H7X2 142 aa16.82■□□□□ 0.28
COL6A3-211ENST00000491233 GPR75-ASB3A0A0A6YYF3 556 aa16.81■□□□□ 0.28
COL6A3-211ENST00000491233 DDTLA6NHG4 134 aaPredicted RBP16.81■□□□□ 0.28
COL6A3-211ENST00000491233 MCAMP43121 646 aa16.81■□□□□ 0.28
COL6A3-211ENST00000491233 ARHGEF6Q15052 776 aa16.81■□□□□ 0.28
COL6A3-211ENST00000491233 DIEXFQ68CQ4 756 aaKnown RBP16.81■□□□□ 0.28
COL6A3-211ENST00000491233 TBC1D9Q6ZT07 1266 aa16.81■□□□□ 0.28
COL6A3-211ENST00000491233 ANKRD23Q86SG2 305 aa16.81■□□□□ 0.28
COL6A3-211ENST00000491233 PTCH2Q9Y6C5 1203 aa16.81■□□□□ 0.28
COL6A3-211ENST00000491233 MGAMO43451 1857 aa16.81■□□□□ 0.28
COL6A3-211ENST00000491233 FOCADQ5VW36 1801 aa16.81■□□□□ 0.28
COL6A3-211ENST00000491233 SIPA1L1O43166 1804 aa16.8■□□□□ 0.28
COL6A3-211ENST00000491233 POTEFA5A3E0 1075 aa16.8■□□□□ 0.28
COL6A3-211ENST00000491233 PHF20L1A8MW92 1017 aa16.8■□□□□ 0.28
COL6A3-211ENST00000491233 UQCRFS1P1P0C7P4 283 aa16.8■□□□□ 0.28
COL6A3-211ENST00000491233 SLURP2P0DP57 97 aa16.8■□□□□ 0.28
COL6A3-211ENST00000491233 RHBDL3P58872 404 aa16.8■□□□□ 0.28
COL6A3-211ENST00000491233 OS9Q13438 667 aaPredicted RBP16.8■□□□□ 0.28
COL6A3-211ENST00000491233 ITPRIPQ8IWB1 547 aa16.8■□□□□ 0.28
COL6A3-211ENST00000491233 SCYL3Q8IZE3 742 aa16.8■□□□□ 0.28
COL6A3-211ENST00000491233 NSUN4Q96CB9 384 aaKnown RBP16.8■□□□□ 0.28
COL6A3-211ENST00000491233 ARHGAP39Q9C0H5 1083 aa16.8■□□□□ 0.28
COL6A3-211ENST00000491233 RAI14Q9P0K7 980 aa16.8■□□□□ 0.28
COL6A3-211ENST00000491233 ADGRA2Q96PE1 1338 aa16.79■□□□□ 0.28
COL6A3-211ENST00000491233 PDHXO00330 501 aa16.79■□□□□ 0.28
COL6A3-211ENST00000491233 RLBP1P12271 317 aa16.79■□□□□ 0.28
COL6A3-211ENST00000491233 GSTO1P78417 241 aa16.79■□□□□ 0.28
COL6A3-211ENST00000491233 LACTBP83111 547 aaPredicted RBP16.79■□□□□ 0.28
COL6A3-211ENST00000491233 MOGSQ13724 837 aa16.79■□□□□ 0.28
COL6A3-211ENST00000491233 KIF22Q14807 665 aa16.79■□□□□ 0.28
COL6A3-211ENST00000491233 TNNI3KQ59H18 835 aa16.79■□□□□ 0.28
COL6A3-211ENST00000491233 SSH3Q8TE77 659 aa16.79■□□□□ 0.28
COL6A3-211ENST00000491233 PICK1Q9NRD5 415 aa16.79■□□□□ 0.28
COL6A3-211ENST00000491233 CPA4Q9UI42 421 aa16.79■□□□□ 0.28
COL6A3-211ENST00000491233 FPGT-TNNI3KV9GXZ4 949 aa16.79■□□□□ 0.28
COL6A3-211ENST00000491233 COL2A1P02458 1487 aaPredicted RBP16.79■□□□□ 0.28
COL6A3-211ENST00000491233 ECM2O94769 699 aaPredicted RBP16.78■□□□□ 0.28
COL6A3-211ENST00000491233 LDHCP07864 332 aa16.78■□□□□ 0.28
COL6A3-211ENST00000491233 ATP8B2P98198 1209 aa16.78■□□□□ 0.28
COL6A3-211ENST00000491233 SLC9C1Q4G0N8 1177 aa16.78■□□□□ 0.28
COL6A3-211ENST00000491233 TTC39AQ5SRH9 613 aa16.78■□□□□ 0.28
COL6A3-211ENST00000491233 PRPF38BQ5VTL8 546 aaKnown RBP16.78■□□□□ 0.28
COL6A3-211ENST00000491233 C17orf99Q6UX52 265 aa16.78■□□□□ 0.28
COL6A3-211ENST00000491233 DBNDD2Q9BQY9 259 aa16.78■□□□□ 0.28
COL6A3-211ENST00000491233 GPR108Q9NPR9 543 aa16.78■□□□□ 0.28
COL6A3-211ENST00000491233 LOC285556D6RIA3 1793 aa16.77■□□□□ 0.28
COL6A3-211ENST00000491233 ZBED9Q6R2W3 1325 aa16.77■□□□□ 0.28
COL6A3-211ENST00000491233 FAM196BA6NMK8 535 aa16.77■□□□□ 0.28
COL6A3-211ENST00000491233 CXCL11O14625 94 aa16.77■□□□□ 0.28
COL6A3-211ENST00000491233 SURF6O75683 361 aaKnown RBP16.77■□□□□ 0.28
COL6A3-211ENST00000491233 PTPRAP18433 802 aa16.77■□□□□ 0.28
COL6A3-211ENST00000491233 MAP3K10Q02779 954 aa16.77■□□□□ 0.28
COL6A3-211ENST00000491233 ZNF333Q96JL9 665 aa16.77■□□□□ 0.28
COL6A3-211ENST00000491233 PARK7Q99497 189 aaKnown RBP16.77■□□□□ 0.28
COL6A3-211ENST00000491233 SNRKQ9NRH2 765 aa16.77■□□□□ 0.28
COL6A3-211ENST00000491233 LRP2BPQ9P2M1 347 aa16.77■□□□□ 0.28
COL6A3-211ENST00000491233 ZHX2Q9Y6X8 837 aa16.77■□□□□ 0.28
COL6A3-211ENST00000491233 KIAA0100Q14667 2235 aaKnown RBP16.77■□□□□ 0.27
COL6A3-211ENST00000491233 A0A0G2JLL6 359 aaPredicted RBP16.76■□□□□ 0.27
COL6A3-211ENST00000491233 NPM3O75607 178 aaKnown RBP16.76■□□□□ 0.27
COL6A3-211ENST00000491233 SLC34A2O95436 690 aa16.76■□□□□ 0.27
COL6A3-211ENST00000491233 GPAT2Q6NUI2 795 aa16.76■□□□□ 0.27
COL6A3-211ENST00000491233 PRRT2Q7Z6L0 340 aaPredicted RBP16.76■□□□□ 0.27
COL6A3-211ENST00000491233 FRMD4AQ9P2Q2 1039 aaPredicted RBP16.76■□□□□ 0.27
COL6A3-211ENST00000491233 ZBTB7BO15156 539 aaPredicted RBP16.75■□□□□ 0.27
COL6A3-211ENST00000491233 CTNND1O60716 968 aaKnown RBP16.75■□□□□ 0.27
COL6A3-211ENST00000491233 MAP4K4O95819 1239 aaPredicted RBP16.75■□□□□ 0.27
COL6A3-211ENST00000491233 CTGFP29279 349 aa16.75■□□□□ 0.27
COL6A3-211ENST00000491233 CCDC158Q5M9N0 1113 aa16.75■□□□□ 0.27
COL6A3-211ENST00000491233 GADL1Q6ZQY3 521 aa16.75■□□□□ 0.27
COL6A3-211ENST00000491233 CCDC84Q86UT8 332 aaPredicted RBP16.75■□□□□ 0.27
COL6A3-211ENST00000491233 TEX11Q8IYF3 940 aa16.75■□□□□ 0.27
COL6A3-211ENST00000491233 NOL10Q9BSC4 688 aaKnown RBP16.75■□□□□ 0.27
COL6A3-211ENST00000491233 OSBPL5Q9H0X9 879 aaPredicted RBP16.75■□□□□ 0.27
COL6A3-211ENST00000491233 AFG3L2Q9Y4W6 797 aa16.75■□□□□ 0.27
COL6A3-211ENST00000491233 GNRH1P01148 92 aa16.74■□□□□ 0.27
COL6A3-211ENST00000491233 CYP2C8P10632 490 aa16.74■□□□□ 0.27
COL6A3-211ENST00000491233 PSMC4P43686 418 aa16.74■□□□□ 0.27
COL6A3-211ENST00000491233 NAA16Q6N069 864 aaPredicted RBP16.74■□□□□ 0.27
COL6A3-211ENST00000491233 NBPF11Q86T75 865 aa16.74■□□□□ 0.27
COL6A3-211ENST00000491233 SH3RF3Q8TEJ3 882 aaPredicted RBP16.74■□□□□ 0.27
COL6A3-211ENST00000491233 SH3TC2Q8TF17 1288 aa16.74■□□□□ 0.27
COL6A3-211ENST00000491233 TRIM47Q96LD4 638 aa16.74■□□□□ 0.27
COL6A3-211ENST00000491233 TMEM106CQ9BVX2 250 aa16.74■□□□□ 0.27
COL6A3-211ENST00000491233 XPO5Q9HAV4 1204 aaKnown RBP eCLIP16.74■□□□□ 0.27
COL6A3-211ENST00000491233 DBNLQ9UJU6 430 aaKnown RBP16.74■□□□□ 0.27
COL6A3-211ENST00000491233 NOP58Q9Y2X3 529 aaKnown RBP16.74■□□□□ 0.27
COL6A3-211ENST00000491233 TRIM75PA6NK02 468 aa16.73■□□□□ 0.27
COL6A3-211ENST00000491233 TBC1D12O60347 775 aa16.73■□□□□ 0.27
COL6A3-211ENST00000491233 MYCP01106 439 aaPredicted RBP16.73■□□□□ 0.27
COL6A3-211ENST00000491233 EN2P19622 333 aaPredicted RBP16.73■□□□□ 0.27
COL6A3-211ENST00000491233 PRMT2P55345 433 aa16.73■□□□□ 0.27
COL6A3-211ENST00000491233 FASTKD5Q7L8L6 764 aaKnown RBP16.73■□□□□ 0.27
COL6A3-211ENST00000491233 AATFQ9NY61 560 aaKnown RBP eCLIP16.73■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms