RNA–Protein interactions for RNA: ENST00000487043.5

PTCD3-216, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 1,054 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-216ENST00000487043 MRPL18Q9H0U6 180 aaKnown RBP5.92□□□□□ -1.46
PTCD3-216ENST00000487043 STRIP2Q9ULQ0 834 aa5.92□□□□□ -1.46
PTCD3-216ENST00000487043 SAMM50Q9Y512 469 aa5.92□□□□□ -1.46
PTCD3-216ENST00000487043 DLL1O00548 723 aa5.91□□□□□ -1.46
PTCD3-216ENST00000487043 F13A1P00488 732 aa5.91□□□□□ -1.46
PTCD3-216ENST00000487043 FSTP19883 344 aa5.91□□□□□ -1.46
PTCD3-216ENST00000487043 MCM4P33991 863 aa5.91□□□□□ -1.46
PTCD3-216ENST00000487043 SEPT6Q14141 434 aa5.91□□□□□ -1.46
PTCD3-216ENST00000487043 ZNF423Q2M1K9 1284 aa5.91□□□□□ -1.46
PTCD3-216ENST00000487043 ADAMTSL4Q6UY14 1074 aa5.91□□□□□ -1.46
PTCD3-216ENST00000487043 CCDC81Q6ZN84 652 aa5.91□□□□□ -1.46
PTCD3-216ENST00000487043 TRIM42Q8IWZ5 723 aa5.91□□□□□ -1.46
PTCD3-216ENST00000487043 IL22RA1Q8N6P7 574 aa5.91□□□□□ -1.46
PTCD3-216ENST00000487043 SRRTQ9BXP5 876 aaKnown RBP5.91□□□□□ -1.46
PTCD3-216ENST00000487043 TRIM55Q9BYV6 548 aa5.91□□□□□ -1.46
PTCD3-216ENST00000487043 MIR1-1HGQ9H1L0 117 aa5.91□□□□□ -1.46
PTCD3-216ENST00000487043 CBX8Q9HC52 389 aa5.91□□□□□ -1.46
PTCD3-216ENST00000487043 TRIM33Q9UPN9 1127 aa5.91□□□□□ -1.46
PTCD3-216ENST00000487043 CDK11AQ9UQ88 783 aaPredicted RBP5.91□□□□□ -1.46
PTCD3-216ENST00000487043 FAM177BA6PVY3 158 aa5.9□□□□□ -1.46
PTCD3-216ENST00000487043 PTPRAP18433 802 aa5.9□□□□□ -1.46
PTCD3-216ENST00000487043 BMP6P22004 513 aa5.9□□□□□ -1.46
PTCD3-216ENST00000487043 NME2P22392 152 aa5.9□□□□□ -1.46
PTCD3-216ENST00000487043 SSTR4P31391 388 aa5.9□□□□□ -1.46
PTCD3-216ENST00000487043 NFE2L2Q16236 605 aa5.9□□□□□ -1.46
PTCD3-216ENST00000487043 FBXW10Q5XX13 1052 aa5.9□□□□□ -1.46
PTCD3-216ENST00000487043 SLITRK4Q8IW52 837 aa5.9□□□□□ -1.46
PTCD3-216ENST00000487043 HNRNPLLQ8WVV9 542 aaKnown RBP5.9□□□□□ -1.46
PTCD3-216ENST00000487043 GATAD2BQ8WXI9 593 aa5.9□□□□□ -1.46
PTCD3-216ENST00000487043 MRFAP1L1Q96HT8 127 aa5.9□□□□□ -1.46
PTCD3-216ENST00000487043 PPT2Q9UMR5 302 aa5.9□□□□□ -1.46
PTCD3-216ENST00000487043 SOX13Q9UN79 622 aa5.9□□□□□ -1.46
PTCD3-216ENST00000487043 R3HCC1Q9Y3T6 440 aaKnown RBP5.9□□□□□ -1.46
PTCD3-216ENST00000487043 RSF1Q96T23 1441 aaPredicted RBP5.9□□□□□ -1.47
PTCD3-216ENST00000487043 BAZ1AQ9NRL2 1556 aaPredicted RBP5.89□□□□□ -1.47
PTCD3-216ENST00000487043 U2SURPO15042 1029 aaKnown RBP5.89□□□□□ -1.47
PTCD3-216ENST00000487043 B3GALT4O96024 378 aa5.89□□□□□ -1.47
PTCD3-216ENST00000487043 GLB1P16278 677 aa5.89□□□□□ -1.47
PTCD3-216ENST00000487043 NBPF6Q5VWK0 638 aa5.89□□□□□ -1.47
PTCD3-216ENST00000487043 MCTP1Q6DN14 999 aa5.89□□□□□ -1.47
PTCD3-216ENST00000487043 SDE2Q6IQ49 451 aa5.89□□□□□ -1.47
PTCD3-216ENST00000487043 ZNF746Q6NUN9 644 aaPredicted RBP5.89□□□□□ -1.47
PTCD3-216ENST00000487043 VN1R5Q7Z5H4 357 aa5.89□□□□□ -1.47
PTCD3-216ENST00000487043 SLC51AQ86UW1 340 aa5.89□□□□□ -1.47
PTCD3-216ENST00000487043 SULF2Q8IWU5 870 aa5.89□□□□□ -1.47
PTCD3-216ENST00000487043 DZIP1LQ8IYY4 767 aaKnown RBP5.89□□□□□ -1.47
PTCD3-216ENST00000487043 GRIN3AQ8TCU5 1115 aa5.89□□□□□ -1.47
PTCD3-216ENST00000487043 STK35Q8TDR2 534 aa5.89□□□□□ -1.47
PTCD3-216ENST00000487043 DCAF11Q8TEB1 546 aa5.89□□□□□ -1.47
PTCD3-216ENST00000487043 NBPF4Q96M43 638 aa5.89□□□□□ -1.47
PTCD3-216ENST00000487043 SH2B1Q9NRF2 756 aaPredicted RBP5.89□□□□□ -1.47
PTCD3-216ENST00000487043 CYP8B1Q9UNU6 501 aa5.89□□□□□ -1.47
PTCD3-216ENST00000487043 ROBO2Q9HCK4 1378 aa5.89□□□□□ -1.47
PTCD3-216ENST00000487043 ANKRD62A6NC57 917 aa5.88□□□□□ -1.47
PTCD3-216ENST00000487043 F8W735 103 aaPredicted RBP5.88□□□□□ -1.47
PTCD3-216ENST00000487043 PPM1GO15355 546 aaPredicted RBP5.88□□□□□ -1.47
PTCD3-216ENST00000487043 ARNTP27540 789 aa5.88□□□□□ -1.47
PTCD3-216ENST00000487043 CDC25BP30305 580 aa5.88□□□□□ -1.47
PTCD3-216ENST00000487043 SERINC3Q13530 473 aa5.88□□□□□ -1.47
PTCD3-216ENST00000487043 MPP2Q14168 576 aa5.88□□□□□ -1.47
PTCD3-216ENST00000487043 LRRC14Q15048 493 aa5.88□□□□□ -1.47
PTCD3-216ENST00000487043 CWF19L2Q2TBE0 894 aaKnown RBP5.88□□□□□ -1.47
PTCD3-216ENST00000487043 DIEXFQ68CQ4 756 aaKnown RBP5.88□□□□□ -1.47
PTCD3-216ENST00000487043 LLGL2Q6P1M3 1020 aa5.88□□□□□ -1.47
PTCD3-216ENST00000487043 ZNF662Q6ZS27 426 aa5.88□□□□□ -1.47
PTCD3-216ENST00000487043 CCDC84Q86UT8 332 aaPredicted RBP5.88□□□□□ -1.47
PTCD3-216ENST00000487043 TMEM130Q8N3G9 435 aa5.88□□□□□ -1.47
PTCD3-216ENST00000487043 FERD3LQ96RJ6 166 aa5.88□□□□□ -1.47
PTCD3-216ENST00000487043 SRPK1Q96SB4 655 aaKnown RBP5.88□□□□□ -1.47
PTCD3-216ENST00000487043 ADAM19Q9H013 955 aa5.88□□□□□ -1.47
PTCD3-216ENST00000487043 GOLGA2P5Q9HBQ8 144 aa5.88□□□□□ -1.47
PTCD3-216ENST00000487043 SIRPGQ9P1W8 387 aa5.88□□□□□ -1.47
PTCD3-216ENST00000487043 TBX22Q9Y458 520 aa5.88□□□□□ -1.47
PTCD3-216ENST00000487043 MROH2BQ7Z745 1585 aa5.88□□□□□ -1.47
PTCD3-216ENST00000487043 FAM221AA4D161 298 aa5.87□□□□□ -1.47
PTCD3-216ENST00000487043 BTBD11A6QL63 1104 aa5.87□□□□□ -1.47
PTCD3-216ENST00000487043 SMAD7O15105 426 aaKnown RBP5.87□□□□□ -1.47
PTCD3-216ENST00000487043 KLF4O43474 513 aa5.87□□□□□ -1.47
PTCD3-216ENST00000487043 BPNT1O95861 308 aa5.87□□□□□ -1.47
PTCD3-216ENST00000487043 ESRRAP11474 423 aaPredicted RBP5.87□□□□□ -1.47
PTCD3-216ENST00000487043 ZNF165P49910 485 aa5.87□□□□□ -1.47
PTCD3-216ENST00000487043 EIF6P56537 245 aaKnown RBP5.87□□□□□ -1.47
PTCD3-216ENST00000487043 RAB33AQ14088 237 aa5.87□□□□□ -1.47
PTCD3-216ENST00000487043 IKBKEQ14164 716 aa5.87□□□□□ -1.47
PTCD3-216ENST00000487043 GK5Q6ZS86 529 aa5.87□□□□□ -1.47
PTCD3-216ENST00000487043 JAZF1Q86VZ6 243 aa5.87□□□□□ -1.47
PTCD3-216ENST00000487043 MAP4K3Q8IVH8 894 aa5.87□□□□□ -1.47
PTCD3-216ENST00000487043 AGGF1Q8N302 714 aaeCLIP5.87□□□□□ -1.47
PTCD3-216ENST00000487043 SHDQ96IW2 340 aa5.87□□□□□ -1.47
PTCD3-216ENST00000487043 CRBNQ96SW2 442 aa5.87□□□□□ -1.47
PTCD3-216ENST00000487043 EMILIN2Q9BXX0 1053 aa5.87□□□□□ -1.47
PTCD3-216ENST00000487043 LRRC3Q9BY71 257 aa5.87□□□□□ -1.47
PTCD3-216ENST00000487043 BRMS1Q9HCU9 246 aa5.87□□□□□ -1.47
PTCD3-216ENST00000487043 PRKAG3Q9UGI9 489 aa5.87□□□□□ -1.47
PTCD3-216ENST00000487043 SMARCA4P51532 1647 aa5.86□□□□□ -1.47
PTCD3-216ENST00000487043 CCDC85CA6NKD9 419 aa5.86□□□□□ -1.47
PTCD3-216ENST00000487043 PAX4O43316 350 aa5.86□□□□□ -1.47
PTCD3-216ENST00000487043 CILPO75339 1184 aa5.86□□□□□ -1.47
PTCD3-216ENST00000487043 NCLP19338 710 aaKnown RBP5.86□□□□□ -1.47
PTCD3-216ENST00000487043 EPHA1P21709 976 aa5.86□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms