RNA–Protein interactions for RNA: ENST00000435607.3

SCN4A-201, Transcript of sodium voltage-gated channel alpha subunit 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SCN4A, Length 7,805 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4A-201ENST00000435607 ADPGKQ9BRR6 497 aa12.47□□□□□ -0.41
SCN4A-201ENST00000435607 GBP7Q8N8V2 638 aaPredicted RBP12.47□□□□□ -0.41
SCN4A-201ENST00000435607 EMILIN1Q9Y6C2 1016 aa12.47□□□□□ -0.41
SCN4A-201ENST00000435607 KRT3P12035 628 aa12.46□□□□□ -0.41
SCN4A-201ENST00000435607 IWS1Q96ST2 819 aa12.46□□□□□ -0.41
SCN4A-201ENST00000435607 LMCD1Q9NZU5 365 aa12.46□□□□□ -0.41
SCN4A-201ENST00000435607 BRAPQ7Z569 592 aa12.46□□□□□ -0.41
SCN4A-201ENST00000435607 HAUS1Q96CS2 278 aa12.46□□□□□ -0.41
SCN4A-201ENST00000435607 CCDC68Q9H2F9 335 aa12.46□□□□□ -0.41
SCN4A-201ENST00000435607 PCDH11XQ9BZA7 1347 aa12.46□□□□□ -0.41
SCN4A-201ENST00000435607 PCDH11YQ9BZA8 1340 aa12.46□□□□□ -0.41
SCN4A-201ENST00000435607 CAPN9O14815 690 aa12.46□□□□□ -0.41
SCN4A-201ENST00000435607 YARSP54577 528 aaKnown RBP12.46□□□□□ -0.41
SCN4A-201ENST00000435607 DIXDC1Q155Q3 683 aa12.46□□□□□ -0.41
SCN4A-201ENST00000435607 CEP85LQ5SZL2 805 aa12.46□□□□□ -0.41
SCN4A-201ENST00000435607 GKAP1Q5VSY0 366 aaPredicted RBP12.46□□□□□ -0.41
SCN4A-201ENST00000435607 CCDC62Q6P9F0 684 aa12.46□□□□□ -0.41
SCN4A-201ENST00000435607 MIPOL1Q8TD10 442 aa12.46□□□□□ -0.41
SCN4A-201ENST00000435607 UBLCP1Q8WVY7 318 aaPredicted RBP12.46□□□□□ -0.41
SCN4A-201ENST00000435607 CHPF2Q9P2E5 772 aa12.46□□□□□ -0.41
SCN4A-201ENST00000435607 KSR2Q6VAB6 950 aa12.46□□□□□ -0.41
SCN4A-201ENST00000435607 RHPN1Q8TCX5 695 aa12.46□□□□□ -0.41
SCN4A-201ENST00000435607 DCPSQ96C86 337 aaKnown RBP12.46□□□□□ -0.41
SCN4A-201ENST00000435607 RNF216Q9NWF9 866 aaPredicted RBP12.46□□□□□ -0.41
SCN4A-201ENST00000435607 RTL1A6NKG5 1358 aa12.46□□□□□ -0.41
SCN4A-201ENST00000435607 TNRQ92752 1358 aa12.46□□□□□ -0.41
SCN4A-201ENST00000435607 SPTLC2O15270 562 aa12.46□□□□□ -0.42
SCN4A-201ENST00000435607 RARSP54136 660 aaKnown RBP12.46□□□□□ -0.42
SCN4A-201ENST00000435607 ATP11AP98196 1134 aa12.46□□□□□ -0.42
SCN4A-201ENST00000435607 IFT81Q8WYA0 676 aa12.46□□□□□ -0.42
SCN4A-201ENST00000435607 F8W8V4 182 aa12.46□□□□□ -0.42
SCN4A-201ENST00000435607 ZEB2O60315 1214 aa12.46□□□□□ -0.42
SCN4A-201ENST00000435607 CLSTN2Q9H4D0 955 aa12.46□□□□□ -0.42
SCN4A-201ENST00000435607 BAG5Q9UL15 447 aa12.46□□□□□ -0.42
SCN4A-201ENST00000435607 MAIP1Q8WWC4 291 aa12.46□□□□□ -0.42
SCN4A-201ENST00000435607 ACEP12821 1306 aa12.45□□□□□ -0.42
SCN4A-201ENST00000435607 ZSCAN22P10073 491 aaPredicted RBP12.45□□□□□ -0.42
SCN4A-201ENST00000435607 DLGAP5Q15398 846 aa12.45□□□□□ -0.42
SCN4A-201ENST00000435607 FLAD1Q8NFF5 587 aa12.45□□□□□ -0.42
SCN4A-201ENST00000435607 GLG1Q92896 1179 aa12.45□□□□□ -0.42
SCN4A-201ENST00000435607 LZTS2Q9BRK4 669 aa12.45□□□□□ -0.42
SCN4A-201ENST00000435607 PDE6AP16499 860 aa12.45□□□□□ -0.42
SCN4A-201ENST00000435607 TMOD1P28289 359 aa12.45□□□□□ -0.42
SCN4A-201ENST00000435607 LETM2Q2VYF4 491 aa12.45□□□□□ -0.42
SCN4A-201ENST00000435607 MIGA1Q8NAN2 632 aa12.45□□□□□ -0.42
SCN4A-201ENST00000435607 CCPG1Q9ULG6 757 aa12.45□□□□□ -0.42
SCN4A-201ENST00000435607 SNAPC4Q5SXM2 1469 aa12.45□□□□□ -0.42
SCN4A-201ENST00000435607 RNF113AO15541 343 aaKnown RBP12.45□□□□□ -0.42
SCN4A-201ENST00000435607 CEBPAP49715 358 aaPredicted RBP12.45□□□□□ -0.42
SCN4A-201ENST00000435607 C4orf50Q6ZRC1 276 aa12.45□□□□□ -0.42
SCN4A-201ENST00000435607 CNGA4Q8IV77 575 aa12.45□□□□□ -0.42
SCN4A-201ENST00000435607 VCX3AQ9NNX9 186 aa12.45□□□□□ -0.42
SCN4A-201ENST00000435607 HIBADHP31937 336 aaKnown RBP12.45□□□□□ -0.42
SCN4A-201ENST00000435607 PSMD6Q15008 389 aa12.45□□□□□ -0.42
SCN4A-201ENST00000435607 SAP30BPQ9UHR5 308 aaKnown RBP12.45□□□□□ -0.42
SCN4A-201ENST00000435607 GIGYF1O75420 1035 aaPredicted RBP12.45□□□□□ -0.42
SCN4A-201ENST00000435607 ZBTB8OSQ8IWT0 167 aa12.45□□□□□ -0.42
SCN4A-201ENST00000435607 JARID2Q92833 1246 aaPredicted RBP12.45□□□□□ -0.42
SCN4A-201ENST00000435607 LARP6Q9BRS8 491 aaKnown RBP12.45□□□□□ -0.42
SCN4A-201ENST00000435607 TRIM56Q9BRZ2 755 aaKnown RBP12.45□□□□□ -0.42
SCN4A-201ENST00000435607 SLC8A2Q9UPR5 921 aa12.45□□□□□ -0.42
SCN4A-201ENST00000435607 PPME1Q9Y570 386 aa12.45□□□□□ -0.42
SCN4A-201ENST00000435607 CD19P15391 556 aa12.45□□□□□ -0.42
SCN4A-201ENST00000435607 PALM2Q8IXS6 379 aa12.45□□□□□ -0.42
SCN4A-201ENST00000435607 PARD3BQ8TEW8 1205 aa12.45□□□□□ -0.42
SCN4A-201ENST00000435607 CCNT1O60563 726 aaKnown RBP12.44□□□□□ -0.42
SCN4A-201ENST00000435607 CDR2Q01850 454 aa12.44□□□□□ -0.42
SCN4A-201ENST00000435607 BBS5Q8N3I7 341 aa12.44□□□□□ -0.42
SCN4A-201ENST00000435607 METTL13Q8N6R0 699 aa12.44□□□□□ -0.42
SCN4A-201ENST00000435607 RNF169Q8NCN4 708 aa12.44□□□□□ -0.42
SCN4A-201ENST00000435607 DNM3Q9UQ16 869 aa12.44□□□□□ -0.42
SCN4A-201ENST00000435607 SYT1P21579 422 aa12.44□□□□□ -0.42
SCN4A-201ENST00000435607 SLC1A4P43007 532 aa12.44□□□□□ -0.42
SCN4A-201ENST00000435607 DENND4BO75064 1496 aaPredicted RBP12.44□□□□□ -0.42
SCN4A-201ENST00000435607 MCM6Q14566 821 aa12.44□□□□□ -0.42
SCN4A-201ENST00000435607 ASIC2Q16515 512 aa12.44□□□□□ -0.42
SCN4A-201ENST00000435607 NOP9Q86U38 636 aaKnown RBP12.44□□□□□ -0.42
SCN4A-201ENST00000435607 GPATCH11Q8N954 259 aa12.44□□□□□ -0.42
SCN4A-201ENST00000435607 MLXIPQ9HAP2 919 aa12.44□□□□□ -0.42
SCN4A-201ENST00000435607 STK25O00506 426 aa12.44□□□□□ -0.42
SCN4A-201ENST00000435607 TRIM14Q14142 442 aa12.44□□□□□ -0.42
SCN4A-201ENST00000435607 TTLL7Q6ZT98 887 aa12.44□□□□□ -0.42
SCN4A-201ENST00000435607 TRIM50Q86XT4 487 aa12.44□□□□□ -0.42
SCN4A-201ENST00000435607 SULF1Q8IWU6 871 aa12.44□□□□□ -0.42
SCN4A-201ENST00000435607 RBM8AQ9Y5S9 174 aaKnown RBP12.44□□□□□ -0.42
SCN4A-201ENST00000435607 RBBP5Q15291 538 aaKnown RBP12.44□□□□□ -0.42
SCN4A-201ENST00000435607 RPS6KC1Q96S38 1066 aa12.44□□□□□ -0.42
SCN4A-201ENST00000435607 TTC1Q99614 292 aa12.44□□□□□ -0.42
SCN4A-201ENST00000435607 PLCH2O75038 1416 aa12.43□□□□□ -0.42
SCN4A-201ENST00000435607 MCTP2Q6DN12 878 aa12.43□□□□□ -0.42
SCN4A-201ENST00000435607 TBC1D22AQ8WUA7 517 aa12.43□□□□□ -0.42
SCN4A-201ENST00000435607 EBAG9O00559 213 aa12.43□□□□□ -0.42
SCN4A-201ENST00000435607 SKA2Q8WVK7 121 aaPredicted RBP12.43□□□□□ -0.42
SCN4A-201ENST00000435607 LRFN2Q9ULH4 789 aa12.43□□□□□ -0.42
SCN4A-201ENST00000435607 GUCA1BQ9UMX6 200 aa12.43□□□□□ -0.42
SCN4A-201ENST00000435607 PRKG1Q13976 671 aa12.43□□□□□ -0.42
SCN4A-201ENST00000435607 CPXCR1Q8N123 301 aa12.43□□□□□ -0.42
SCN4A-201ENST00000435607 SBNO2Q9Y2G9 1366 aa12.43□□□□□ -0.42
SCN4A-201ENST00000435607 TEX14Q8IWB6 1497 aa12.43□□□□□ -0.42
SCN4A-201ENST00000435607 H0YCG3 227 aa12.43□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms