RNA–Protein interactions for RNA: ENST00000396828.8

NEDD8-202, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 626 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-202ENST00000396828 FTSJ3Q8IY81 847 aaKnown RBP12.78□□□□□ -0.36
NEDD8-202ENST00000396828 HOOK2Q96ED9 719 aa12.78□□□□□ -0.36
NEDD8-202ENST00000396828 XAGE2Q96GT9 111 aa12.78□□□□□ -0.36
NEDD8-202ENST00000396828 ZCCHC17Q9NP64 241 aaKnown RBP12.78□□□□□ -0.36
NEDD8-202ENST00000396828 FRMD4AQ9P2Q2 1039 aaPredicted RBP12.78□□□□□ -0.36
NEDD8-202ENST00000396828 GAKO14976 1311 aa12.78□□□□□ -0.36
NEDD8-202ENST00000396828 RFX7Q2KHR2 1363 aa12.78□□□□□ -0.36
NEDD8-202ENST00000396828 DOCK2Q92608 1830 aa12.77□□□□□ -0.37
NEDD8-202ENST00000396828 SEMA3EO15041 775 aa12.77□□□□□ -0.37
NEDD8-202ENST00000396828 SRGAP3O43295 1099 aa12.77□□□□□ -0.37
NEDD8-202ENST00000396828 WDHD1O75717 1129 aaPredicted RBP12.77□□□□□ -0.37
NEDD8-202ENST00000396828 CYP2C8P10632 490 aa12.77□□□□□ -0.37
NEDD8-202ENST00000396828 HOXD11P31277 338 aaPredicted RBP12.77□□□□□ -0.37
NEDD8-202ENST00000396828 NOL9Q5SY16 702 aaKnown RBP12.77□□□□□ -0.37
NEDD8-202ENST00000396828 ERICH6BQ5W0A0 696 aa12.77□□□□□ -0.37
NEDD8-202ENST00000396828 ATF7IPQ6VMQ6 1270 aa12.77□□□□□ -0.37
NEDD8-202ENST00000396828 ANKRD23Q86SG2 305 aa12.77□□□□□ -0.37
NEDD8-202ENST00000396828 CCDC84Q86UT8 332 aaPredicted RBP12.77□□□□□ -0.37
NEDD8-202ENST00000396828 TRIM47Q96LD4 638 aa12.77□□□□□ -0.37
NEDD8-202ENST00000396828 IDI2Q9BXS1 227 aa12.77□□□□□ -0.37
NEDD8-202ENST00000396828 ABCF2Q9UG63 623 aa12.77□□□□□ -0.37
NEDD8-202ENST00000396828 ZBTB22O15209 634 aa12.76□□□□□ -0.37
NEDD8-202ENST00000396828 TRIM27P14373 513 aa12.76□□□□□ -0.37
NEDD8-202ENST00000396828 MECOMQ03112 1051 aa12.76□□□□□ -0.37
NEDD8-202ENST00000396828 MTX1Q13505 466 aa12.76□□□□□ -0.37
NEDD8-202ENST00000396828 MTFR1Q15390 333 aa12.76□□□□□ -0.37
NEDD8-202ENST00000396828 TBC1D9Q6ZT07 1266 aa12.76□□□□□ -0.37
NEDD8-202ENST00000396828 PHIPQ8WWQ0 1821 aa12.76□□□□□ -0.37
NEDD8-202ENST00000396828 PNMA6EA0A0J9YXQ4 647 aa12.75□□□□□ -0.37
NEDD8-202ENST00000396828 FAM196BA6NMK8 535 aa12.75□□□□□ -0.37
NEDD8-202ENST00000396828 CEP290O15078 2479 aa12.75□□□□□ -0.37
NEDD8-202ENST00000396828 ENTPD3O75355 529 aa12.75□□□□□ -0.37
NEDD8-202ENST00000396828 BTDP43251 543 aa12.75□□□□□ -0.37
NEDD8-202ENST00000396828 PSMC4P43686 418 aa12.75□□□□□ -0.37
NEDD8-202ENST00000396828 MAP3K10Q02779 954 aa12.75□□□□□ -0.37
NEDD8-202ENST00000396828 PICALMQ13492 652 aa12.75□□□□□ -0.37
NEDD8-202ENST00000396828 CLUAP1Q96AJ1 413 aa12.75□□□□□ -0.37
NEDD8-202ENST00000396828 FAM163AQ96GL9 167 aaPredicted RBP12.75□□□□□ -0.37
NEDD8-202ENST00000396828 NEUROD6Q96NK8 337 aa12.75□□□□□ -0.37
NEDD8-202ENST00000396828 TMEM106CQ9BVX2 250 aa12.75□□□□□ -0.37
NEDD8-202ENST00000396828 HMG20BQ9P0W2 317 aa12.75□□□□□ -0.37
NEDD8-202ENST00000396828 ZHX2Q9Y6X8 837 aa12.75□□□□□ -0.37
NEDD8-202ENST00000396828 PTPRFP10586 1907 aa12.74□□□□□ -0.37
NEDD8-202ENST00000396828 MROH7-TTC4A0A0A0MT08 1334 aa12.74□□□□□ -0.37
NEDD8-202ENST00000396828 PTPRAP18433 802 aa12.74□□□□□ -0.37
NEDD8-202ENST00000396828 OSBPP22059 807 aa12.74□□□□□ -0.37
NEDD8-202ENST00000396828 RHBDL3P58872 404 aa12.74□□□□□ -0.37
NEDD8-202ENST00000396828 KIF22Q14807 665 aa12.74□□□□□ -0.37
NEDD8-202ENST00000396828 ARHGEF6Q15052 776 aa12.74□□□□□ -0.37
NEDD8-202ENST00000396828 SLC4A8Q2Y0W8 1093 aa12.74□□□□□ -0.37
NEDD8-202ENST00000396828 NBPF11Q86T75 865 aa12.74□□□□□ -0.37
NEDD8-202ENST00000396828 DZIP1Q86YF9 867 aaKnown RBP12.74□□□□□ -0.37
NEDD8-202ENST00000396828 SCYL3Q8IZE3 742 aa12.74□□□□□ -0.37
NEDD8-202ENST00000396828 SRRDQ9UH36 339 aa12.74□□□□□ -0.37
NEDD8-202ENST00000396828 AFG3L2Q9Y4W6 797 aa12.74□□□□□ -0.37
NEDD8-202ENST00000396828 PDS5AQ29RF7 1337 aaKnown RBP12.73□□□□□ -0.37
NEDD8-202ENST00000396828 GPR75-ASB3A0A0A6YYF3 556 aa12.73□□□□□ -0.37
NEDD8-202ENST00000396828 A0A0G2JLL6 359 aaPredicted RBP12.73□□□□□ -0.37
NEDD8-202ENST00000396828 CXCL11O14625 94 aa12.73□□□□□ -0.37
NEDD8-202ENST00000396828 GNAI3P08754 354 aa12.73□□□□□ -0.37
NEDD8-202ENST00000396828 BCRP11274 1271 aa12.73□□□□□ -0.37
NEDD8-202ENST00000396828 RRP1BQ14684 758 aaKnown RBP12.73□□□□□ -0.37
NEDD8-202ENST00000396828 C20orf194Q5TEA3 1177 aa12.73□□□□□ -0.37
NEDD8-202ENST00000396828 PRRT2Q7Z6L0 340 aaPredicted RBP12.73□□□□□ -0.37
NEDD8-202ENST00000396828 ZSCAN29Q8IWY8 852 aaPredicted RBP12.73□□□□□ -0.37
NEDD8-202ENST00000396828 ZGPATQ8N5A5 531 aaKnown RBP12.73□□□□□ -0.37
NEDD8-202ENST00000396828 SHISA4Q96DD7 197 aa12.73□□□□□ -0.37
NEDD8-202ENST00000396828 MGAMO43451 1857 aa12.73□□□□□ -0.37
NEDD8-202ENST00000396828 DOCK1Q14185 1865 aa12.72□□□□□ -0.37
NEDD8-202ENST00000396828 FMNL1O95466 1100 aaPredicted RBP12.72□□□□□ -0.37
NEDD8-202ENST00000396828 MCAMP43121 646 aa12.72□□□□□ -0.37
NEDD8-202ENST00000396828 MVPQ14764 893 aaKnown RBP12.72□□□□□ -0.37
NEDD8-202ENST00000396828 HABP4Q5JVS0 413 aaKnown RBP12.72□□□□□ -0.37
NEDD8-202ENST00000396828 ERICH6Q7L0X2 663 aa12.72□□□□□ -0.37
NEDD8-202ENST00000396828 TMEM57Q8N5G2 664 aa12.72□□□□□ -0.37
NEDD8-202ENST00000396828 SPATA5Q8NB90 893 aa12.72□□□□□ -0.37
NEDD8-202ENST00000396828 PANK1Q8TE04 598 aa12.72□□□□□ -0.37
NEDD8-202ENST00000396828 NSUN4Q96CB9 384 aaKnown RBP12.72□□□□□ -0.37
NEDD8-202ENST00000396828 CRBNQ96SW2 442 aa12.72□□□□□ -0.37
NEDD8-202ENST00000396828 GABRQQ9UN88 632 aa12.72□□□□□ -0.37
NEDD8-202ENST00000396828 HDAC5Q9UQL6 1122 aa12.72□□□□□ -0.37
NEDD8-202ENST00000396828 AKAP2Q9Y2D5 859 aa12.72□□□□□ -0.37
NEDD8-202ENST00000396828 MYPNQ86TC9 1320 aa12.71□□□□□ -0.37
NEDD8-202ENST00000396828 TRIM75PA6NK02 468 aa12.71□□□□□ -0.37
NEDD8-202ENST00000396828 GNRH1P01148 92 aa12.71□□□□□ -0.37
NEDD8-202ENST00000396828 GNAI2P04899 355 aa12.71□□□□□ -0.37
NEDD8-202ENST00000396828 PRKCZQ05513 592 aa12.71□□□□□ -0.37
NEDD8-202ENST00000396828 SPTY2D1Q68D10 685 aaPredicted RBP12.71□□□□□ -0.37
NEDD8-202ENST00000396828 GADL1Q6ZQY3 521 aa12.71□□□□□ -0.37
NEDD8-202ENST00000396828 CHMP4BQ9H444 224 aaKnown RBP12.71□□□□□ -0.37
NEDD8-202ENST00000396828 PICK1Q9NRD5 415 aa12.71□□□□□ -0.37
NEDD8-202ENST00000396828 MYO5AQ9Y4I1 1855 aaKnown RBP12.7□□□□□ -0.38
NEDD8-202ENST00000396828 CTNND1O60716 968 aaKnown RBP12.7□□□□□ -0.38
NEDD8-202ENST00000396828 ARID4AP29374 1257 aaPredicted RBP12.7□□□□□ -0.38
NEDD8-202ENST00000396828 GRK4P32298 578 aa12.7□□□□□ -0.38
NEDD8-202ENST00000396828 TREML2Q5T2D2 321 aa12.7□□□□□ -0.38
NEDD8-202ENST00000396828 ITPRIPQ8IWB1 547 aa12.7□□□□□ -0.38
NEDD8-202ENST00000396828 PARK7Q99497 189 aaKnown RBP12.7□□□□□ -0.38
NEDD8-202ENST00000396828 C1orf115Q9H7X2 142 aa12.7□□□□□ -0.38
NEDD8-202ENST00000396828 SNRKQ9NRH2 765 aa12.7□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms