RNA–Protein interactions for RNA: ENST00000368671.3

CLRN3-201, Transcript of clarin 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLRN3, Length 1,152 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3-201ENST00000368671 DAGLAQ9Y4D2 1042 aa12.89□□□□□ -0.35
CLRN3-201ENST00000368671 LRRFIP2Q9Y608 721 aaKnown RBP12.89□□□□□ -0.35
CLRN3-201ENST00000368671 BTBD19C9JJ37 291 aa12.88□□□□□ -0.35
CLRN3-201ENST00000368671 IRF6O14896 467 aa12.88□□□□□ -0.35
CLRN3-201ENST00000368671 CIAO1O76071 339 aa12.88□□□□□ -0.35
CLRN3-201ENST00000368671 INPP5BP32019 993 aa12.88□□□□□ -0.35
CLRN3-201ENST00000368671 PPIL2Q13356 520 aa12.88□□□□□ -0.35
CLRN3-201ENST00000368671 SNAPC2Q13487 334 aa12.88□□□□□ -0.35
CLRN3-201ENST00000368671 ARHGEF6Q15052 776 aa12.88□□□□□ -0.35
CLRN3-201ENST00000368671 CDC42EP5Q6NZY7 148 aa12.88□□□□□ -0.35
CLRN3-201ENST00000368671 MAMSTRQ6ZN01 415 aa12.88□□□□□ -0.35
CLRN3-201ENST00000368671 FAM151AQ8WW52 585 aa12.88□□□□□ -0.35
CLRN3-201ENST00000368671 ARMC5Q96C12 935 aa12.88□□□□□ -0.35
CLRN3-201ENST00000368671 GNL3LQ9NVN8 582 aaKnown RBP12.88□□□□□ -0.35
CLRN3-201ENST00000368671 PA2G4Q9UQ80 394 aaKnown RBP12.88□□□□□ -0.35
CLRN3-201ENST00000368671 PTCH2Q9Y6C5 1203 aa12.88□□□□□ -0.35
CLRN3-201ENST00000368671 DOCK2Q92608 1830 aa12.88□□□□□ -0.35
CLRN3-201ENST00000368671 LDHBP07195 334 aaKnown RBP12.87□□□□□ -0.35
CLRN3-201ENST00000368671 EN2P19622 333 aaPredicted RBP12.87□□□□□ -0.35
CLRN3-201ENST00000368671 PHKA1P46020 1223 aa12.87□□□□□ -0.35
CLRN3-201ENST00000368671 NFIAQ12857 509 aa12.87□□□□□ -0.35
CLRN3-201ENST00000368671 API5Q9BZZ5 524 aaKnown RBP12.87□□□□□ -0.35
CLRN3-201ENST00000368671 USP40Q9NVE5 1235 aa12.87□□□□□ -0.35
CLRN3-201ENST00000368671 MYH2Q9UKX2 1941 aa12.86□□□□□ -0.35
CLRN3-201ENST00000368671 TLR2O60603 784 aa12.86□□□□□ -0.35
CLRN3-201ENST00000368671 MYCP01106 439 aaPredicted RBP12.86□□□□□ -0.35
CLRN3-201ENST00000368671 ADORA1P30542 326 aa12.86□□□□□ -0.35
CLRN3-201ENST00000368671 IL15P40933 162 aaPredicted RBP12.86□□□□□ -0.35
CLRN3-201ENST00000368671 PPATQ06203 517 aa12.86□□□□□ -0.35
CLRN3-201ENST00000368671 KIF22Q14807 665 aa12.86□□□□□ -0.35
CLRN3-201ENST00000368671 SLC9C1Q4G0N8 1177 aa12.86□□□□□ -0.35
CLRN3-201ENST00000368671 TRMT2AQ8IZ69 625 aaKnown RBP12.86□□□□□ -0.35
CLRN3-201ENST00000368671 GOLGA6L2Q8N9W4 650 aaPredicted RBP12.86□□□□□ -0.35
CLRN3-201ENST00000368671 MEIS3Q99687 375 aa12.86□□□□□ -0.35
CLRN3-201ENST00000368671 ARHGAP39Q9C0H5 1083 aa12.86□□□□□ -0.35
CLRN3-201ENST00000368671 DENND2AQ9ULE3 1009 aa12.86□□□□□ -0.35
CLRN3-201ENST00000368671 CT47B1P0C2W7 299 aaPredicted RBP12.85□□□□□ -0.35
CLRN3-201ENST00000368671 NBPF11Q86T75 865 aa12.85□□□□□ -0.35
CLRN3-201ENST00000368671 ZNF333Q96JL9 665 aa12.85□□□□□ -0.35
CLRN3-201ENST00000368671 ZCCHC17Q9NP64 241 aaKnown RBP12.85□□□□□ -0.35
CLRN3-201ENST00000368671 FAM198AQ9UFP1 575 aa12.85□□□□□ -0.35
CLRN3-201ENST00000368671 HDAC5Q9UQL6 1122 aa12.85□□□□□ -0.35
CLRN3-201ENST00000368671 SALL1Q9NSC2 1324 aa12.85□□□□□ -0.35
CLRN3-201ENST00000368671 SEMA3EO15041 775 aa12.84□□□□□ -0.35
CLRN3-201ENST00000368671 LACTBP83111 547 aaPredicted RBP12.84□□□□□ -0.35
CLRN3-201ENST00000368671 SLC4A8Q2Y0W8 1093 aa12.84□□□□□ -0.35
CLRN3-201ENST00000368671 CCDC102BQ68D86 513 aa12.84□□□□□ -0.35
CLRN3-201ENST00000368671 DZIP1Q86YF9 867 aaKnown RBP12.84□□□□□ -0.35
CLRN3-201ENST00000368671 ZFPM1Q8IX07 1006 aa12.84□□□□□ -0.35
CLRN3-201ENST00000368671 SH3TC2Q8TF17 1288 aa12.84□□□□□ -0.35
CLRN3-201ENST00000368671 SCUBE2Q9NQ36 999 aa12.84□□□□□ -0.35
CLRN3-201ENST00000368671 CPA4Q9UI42 421 aa12.84□□□□□ -0.35
CLRN3-201ENST00000368671 ZNF112Q9UJU3 913 aa12.84□□□□□ -0.35
CLRN3-201ENST00000368671 PDHXO00330 501 aa12.83□□□□□ -0.36
CLRN3-201ENST00000368671 RGS3P49796 1198 aa12.83□□□□□ -0.36
CLRN3-201ENST00000368671 TIMM10P62072 90 aa12.83□□□□□ -0.36
CLRN3-201ENST00000368671 ANKRD23Q86SG2 305 aa12.83□□□□□ -0.36
CLRN3-201ENST00000368671 ZSCAN29Q8IWY8 852 aaPredicted RBP12.83□□□□□ -0.36
CLRN3-201ENST00000368671 ZGPATQ8N5A5 531 aaKnown RBP12.83□□□□□ -0.36
CLRN3-201ENST00000368671 COPRSQ9NQ92 184 aa12.83□□□□□ -0.36
CLRN3-201ENST00000368671 ABCF2Q9UG63 623 aa12.83□□□□□ -0.36
CLRN3-201ENST00000368671 RARSP54136 660 aaKnown RBP12.82□□□□□ -0.36
CLRN3-201ENST00000368671 RASGRF1Q13972 1273 aa12.82□□□□□ -0.36
CLRN3-201ENST00000368671 NOL9Q5SY16 702 aaKnown RBP12.82□□□□□ -0.36
CLRN3-201ENST00000368671 C17orf99Q6UX52 265 aa12.82□□□□□ -0.36
CLRN3-201ENST00000368671 GCC1Q96CN9 775 aa12.82□□□□□ -0.36
CLRN3-201ENST00000368671 KCNH4Q9UQ05 1017 aa12.82□□□□□ -0.36
CLRN3-201ENST00000368671 DOCK1Q14185 1865 aa12.82□□□□□ -0.36
CLRN3-201ENST00000368671 A0A1B0GUL7 405 aa12.81□□□□□ -0.36
CLRN3-201ENST00000368671 SRGAP3O43295 1099 aa12.81□□□□□ -0.36
CLRN3-201ENST00000368671 ENTPD3O75355 529 aa12.81□□□□□ -0.36
CLRN3-201ENST00000368671 GNAI3P08754 354 aa12.81□□□□□ -0.36
CLRN3-201ENST00000368671 CTGFP29279 349 aa12.81□□□□□ -0.36
CLRN3-201ENST00000368671 BTDP43251 543 aa12.81□□□□□ -0.36
CLRN3-201ENST00000368671 PSMC4P43686 418 aa12.81□□□□□ -0.36
CLRN3-201ENST00000368671 TFCP2Q12800 502 aa12.81□□□□□ -0.36
CLRN3-201ENST00000368671 PICALMQ13492 652 aa12.81□□□□□ -0.36
CLRN3-201ENST00000368671 XAGE2Q96GT9 111 aa12.81□□□□□ -0.36
CLRN3-201ENST00000368671 IDI2Q9BXS1 227 aa12.81□□□□□ -0.36
CLRN3-201ENST00000368671 PCDH10Q9P2E7 1040 aa12.81□□□□□ -0.36
CLRN3-201ENST00000368671 GAKO14976 1311 aa12.81□□□□□ -0.36
CLRN3-201ENST00000368671 ATRNL1Q5VV63 1379 aa12.81□□□□□ -0.36
CLRN3-201ENST00000368671 MGAMO43451 1857 aa12.8□□□□□ -0.36
CLRN3-201ENST00000368671 FMNL1O95466 1100 aaPredicted RBP12.8□□□□□ -0.36
CLRN3-201ENST00000368671 GNRH1P01148 92 aa12.8□□□□□ -0.36
CLRN3-201ENST00000368671 SLURP2P0DP57 97 aa12.8□□□□□ -0.36
CLRN3-201ENST00000368671 PRMT2P55345 433 aa12.8□□□□□ -0.36
CLRN3-201ENST00000368671 MOGSQ13724 837 aa12.8□□□□□ -0.36
CLRN3-201ENST00000368671 MVPQ14764 893 aaKnown RBP12.8□□□□□ -0.36
CLRN3-201ENST00000368671 SH3BP5LQ7L8J4 393 aa12.8□□□□□ -0.36
CLRN3-201ENST00000368671 SLF2Q8IX21 1173 aa12.8□□□□□ -0.36
CLRN3-201ENST00000368671 SCYL3Q8IZE3 742 aa12.8□□□□□ -0.36
CLRN3-201ENST00000368671 NEUROD6Q96NK8 337 aa12.8□□□□□ -0.36
CLRN3-201ENST00000368671 TMEM121BQ9BXQ6 578 aaPredicted RBP12.8□□□□□ -0.36
CLRN3-201ENST00000368671 AKAP2Q9Y2D5 859 aa12.8□□□□□ -0.36
CLRN3-201ENST00000368671 BOLA1Q9Y3E2 137 aa12.8□□□□□ -0.36
CLRN3-201ENST00000368671 ADGRA2Q96PE1 1338 aa12.8□□□□□ -0.36
CLRN3-201ENST00000368671 RFX7Q2KHR2 1363 aa12.8□□□□□ -0.36
CLRN3-201ENST00000368671 PHIPQ8WWQ0 1821 aa12.79□□□□□ -0.36
CLRN3-201ENST00000368671 DDTLA6NHG4 134 aaPredicted RBP12.79□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms