RNA–Protein interactions for RNA: ENST00000356922.5

LIG4-201, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,096 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-201ENST00000356922 VEZTQ9HBM0 779 aa4.85□□□□□ -1.63
LIG4-201ENST00000356922 DIAPH3Q9NSV4 1193 aa4.85□□□□□ -1.63
LIG4-201ENST00000356922 GGA3Q9NZ52 723 aa4.85□□□□□ -1.63
LIG4-201ENST00000356922 HAND2P61296 217 aa4.84□□□□□ -1.63
LIG4-201ENST00000356922 HDLBPQ00341 1268 aaKnown RBP4.84□□□□□ -1.63
LIG4-201ENST00000356922 RASA3Q14644 834 aa4.84□□□□□ -1.63
LIG4-201ENST00000356922 SPDYE2Q495Y8 402 aa4.84□□□□□ -1.63
LIG4-201ENST00000356922 NBPF12Q5TAG4 269 aaPredicted RBP4.84□□□□□ -1.63
LIG4-201ENST00000356922 CTR9Q6PD62 1173 aa4.84□□□□□ -1.63
LIG4-201ENST00000356922 MIGA2Q7L4E1 593 aa4.84□□□□□ -1.63
LIG4-201ENST00000356922 ZGPATQ8N5A5 531 aaKnown RBP4.84□□□□□ -1.63
LIG4-201ENST00000356922 AIDAQ96BJ3 306 aa4.84□□□□□ -1.63
LIG4-201ENST00000356922 ADARB2Q9NS39 739 aaKnown RBP4.84□□□□□ -1.63
LIG4-201ENST00000356922 SLC4A4Q9Y6R1 1079 aa4.84□□□□□ -1.63
LIG4-201ENST00000356922 RFX7Q2KHR2 1363 aa4.84□□□□□ -1.63
LIG4-201ENST00000356922 FLT1P17948 1338 aa4.84□□□□□ -1.63
LIG4-201ENST00000356922 MYO3BQ8WXR4 1341 aa4.84□□□□□ -1.63
LIG4-201ENST00000356922 USP17L12C9JPN9 530 aa4.84□□□□□ -1.63
LIG4-201ENST00000356922 USP17L21D6R901 530 aa4.84□□□□□ -1.63
LIG4-201ENST00000356922 CDC45O75419 566 aa4.84□□□□□ -1.63
LIG4-201ENST00000356922 VEGFAP15692 232 aaPredicted RBP4.84□□□□□ -1.63
LIG4-201ENST00000356922 YY1P25490 414 aa4.84□□□□□ -1.63
LIG4-201ENST00000356922 TEX11Q8IYF3 940 aa4.84□□□□□ -1.63
LIG4-201ENST00000356922 IFNL3Q8IZI9 196 aa4.84□□□□□ -1.63
LIG4-201ENST00000356922 BACH2Q9BYV9 841 aa4.84□□□□□ -1.63
LIG4-201ENST00000356922 DDX24Q9GZR7 859 aaKnown RBP eCLIP4.84□□□□□ -1.63
LIG4-201ENST00000356922 DEFB129Q9H1M3 183 aa4.84□□□□□ -1.63
LIG4-201ENST00000356922 HELLSQ9NRZ9 838 aa4.84□□□□□ -1.63
LIG4-201ENST00000356922 CYP21A2P08686 494 aa4.84□□□□□ -1.64
LIG4-201ENST00000356922 CTDSPL2Q05D32 466 aa4.84□□□□□ -1.64
LIG4-201ENST00000356922 STOX1Q6ZVD7 989 aa4.84□□□□□ -1.64
LIG4-201ENST00000356922 USP48Q86UV5 1035 aa4.84□□□□□ -1.64
LIG4-201ENST00000356922 MAP4K1Q92918 833 aa4.84□□□□□ -1.64
LIG4-201ENST00000356922 USP26Q9BXU7 913 aa4.84□□□□□ -1.64
LIG4-201ENST00000356922 WDR90Q96KV7 1748 aa4.84□□□□□ -1.64
LIG4-201ENST00000356922 CCDC171Q6TFL3 1326 aa4.84□□□□□ -1.64
LIG4-201ENST00000356922 ZC3H4Q9UPT8 1303 aaKnown RBP4.84□□□□□ -1.64
LIG4-201ENST00000356922 PATL2C9JE40 543 aaKnown RBP4.83□□□□□ -1.64
LIG4-201ENST00000356922 PRDM1O75626 825 aa4.83□□□□□ -1.64
LIG4-201ENST00000356922 ITGBL1O95965 494 aaPredicted RBP4.83□□□□□ -1.64
LIG4-201ENST00000356922 CPA1P15085 419 aa4.83□□□□□ -1.64
LIG4-201ENST00000356922 MFAP1P55081 439 aaKnown RBP4.83□□□□□ -1.64
LIG4-201ENST00000356922 PRKG1Q13976 671 aa4.83□□□□□ -1.64
LIG4-201ENST00000356922 ADCK5Q3MIX3 580 aa4.83□□□□□ -1.64
LIG4-201ENST00000356922 IDI2Q9BXS1 227 aa4.83□□□□□ -1.64
LIG4-201ENST00000356922 ANO2Q9NQ90 1003 aa4.83□□□□□ -1.64
LIG4-201ENST00000356922 APPP05067 770 aa4.83□□□□□ -1.64
LIG4-201ENST00000356922 ZFYP08048 801 aaPredicted RBP4.83□□□□□ -1.64
LIG4-201ENST00000356922 HOXD11P31277 338 aaPredicted RBP4.83□□□□□ -1.64
LIG4-201ENST00000356922 NECTIN1Q15223 517 aa4.83□□□□□ -1.64
LIG4-201ENST00000356922 CST9Q5W186 159 aa4.83□□□□□ -1.64
LIG4-201ENST00000356922 KIF2CQ99661 725 aa4.83□□□□□ -1.64
LIG4-201ENST00000356922 MCM9Q9NXL9 1143 aa4.83□□□□□ -1.64
LIG4-201ENST00000356922 SSC5DA1L4H1 1573 aa4.83□□□□□ -1.64
LIG4-201ENST00000356922 LAMA2P24043 3122 aaKnown RBP4.83□□□□□ -1.64
LIG4-201ENST00000356922 DTNBO60941 627 aa4.83□□□□□ -1.64
LIG4-201ENST00000356922 CCDC84Q86UT8 332 aaPredicted RBP4.83□□□□□ -1.64
LIG4-201ENST00000356922 TBC1D10CQ8IV04 446 aa4.83□□□□□ -1.64
LIG4-201ENST00000356922 OSBPL5Q9H0X9 879 aaPredicted RBP4.83□□□□□ -1.64
LIG4-201ENST00000356922 GPBP1L1Q9HC44 474 aaPredicted RBP4.83□□□□□ -1.64
LIG4-201ENST00000356922 HDAC9Q9UKV0 1011 aa4.83□□□□□ -1.64
LIG4-201ENST00000356922 ATRNL1Q5VV63 1379 aa4.83□□□□□ -1.64
LIG4-201ENST00000356922 MINDY4BA8MYZ0 360 aa4.82□□□□□ -1.64
LIG4-201ENST00000356922 LDHCP07864 332 aa4.82□□□□□ -1.64
LIG4-201ENST00000356922 LMOD1P29536 600 aaPredicted RBP4.82□□□□□ -1.64
LIG4-201ENST00000356922 GSTO1P78417 241 aa4.82□□□□□ -1.64
LIG4-201ENST00000356922 HTRA3P83110 453 aa4.82□□□□□ -1.64
LIG4-201ENST00000356922 ZSCAN25Q6NSZ9 544 aa4.82□□□□□ -1.64
LIG4-201ENST00000356922 USP50Q70EL3 339 aaPredicted RBP4.82□□□□□ -1.64
LIG4-201ENST00000356922 CLEC10AQ8IUN9 316 aa4.82□□□□□ -1.64
LIG4-201ENST00000356922 GPHNQ9NQX3 736 aaPredicted RBP4.82□□□□□ -1.64
LIG4-201ENST00000356922 CLEC11AQ9Y240 323 aa4.82□□□□□ -1.64
LIG4-201ENST00000356922 RBM8AQ9Y5S9 174 aaKnown RBP4.82□□□□□ -1.64
LIG4-201ENST00000356922 SIPA1L1O43166 1804 aa4.82□□□□□ -1.64
LIG4-201ENST00000356922 BAG3O95817 575 aa4.82□□□□□ -1.64
LIG4-201ENST00000356922 USP5P45974 858 aa4.82□□□□□ -1.64
LIG4-201ENST00000356922 C12orf60Q5U649 245 aa4.82□□□□□ -1.64
LIG4-201ENST00000356922 CHST3Q7LGC8 479 aa4.82□□□□□ -1.64
LIG4-201ENST00000356922 KRT26Q7Z3Y9 468 aa4.82□□□□□ -1.64
LIG4-201ENST00000356922 SCN4AP35499 1836 aa4.82□□□□□ -1.64
LIG4-201ENST00000356922 ECM29Q5VYK3 1845 aa4.82□□□□□ -1.64
LIG4-201ENST00000356922 NMT2O60551 498 aa4.82□□□□□ -1.64
LIG4-201ENST00000356922 GABPAQ06546 454 aa4.82□□□□□ -1.64
LIG4-201ENST00000356922 TCEANC2Q96MN5 208 aa4.82□□□□□ -1.64
LIG4-201ENST00000356922 GNL3Q9BVP2 549 aaKnown RBP eCLIP4.82□□□□□ -1.64
LIG4-201ENST00000356922 SENP2Q9HC62 589 aa4.82□□□□□ -1.64
LIG4-201ENST00000356922 MAST2Q6P0Q8 1798 aa4.82□□□□□ -1.64
LIG4-201ENST00000356922 PHF20L1A8MW92 1017 aa4.82□□□□□ -1.64
LIG4-201ENST00000356922 DGKZQ13574 1117 aa4.82□□□□□ -1.64
LIG4-201ENST00000356922 FAM151AQ8WW52 585 aa4.82□□□□□ -1.64
LIG4-201ENST00000356922 LARP6Q9BRS8 491 aaKnown RBP4.82□□□□□ -1.64
LIG4-201ENST00000356922 IQCA1LA6NCM1 817 aa4.81□□□□□ -1.64
LIG4-201ENST00000356922 SLC27A2O14975 620 aa4.81□□□□□ -1.64
LIG4-201ENST00000356922 SHMT1P34896 483 aa4.81□□□□□ -1.64
LIG4-201ENST00000356922 CREB3L3Q68CJ9 461 aa4.81□□□□□ -1.64
LIG4-201ENST00000356922 RASGRP2Q7LDG7 609 aa4.81□□□□□ -1.64
LIG4-201ENST00000356922 SIAH1Q8IUQ4 282 aa4.81□□□□□ -1.64
LIG4-201ENST00000356922 ZSCAN29Q8IWY8 852 aaPredicted RBP4.81□□□□□ -1.64
LIG4-201ENST00000356922 ZKSCAN4Q969J2 545 aaPredicted RBP4.81□□□□□ -1.64
LIG4-201ENST00000356922 CHMP4CQ96CF2 233 aa4.81□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms