RNA–Protein interactions for RNA: ENST00000333496.14

CLN3-201, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,608 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-201ENST00000333496 SH3RF3Q8TEJ3 882 aaPredicted RBP19.27■□□□□ 0.68
CLN3-201ENST00000333496 HOOK2Q96ED9 719 aa19.27■□□□□ 0.68
CLN3-201ENST00000333496 EDC3Q96F86 508 aaKnown RBP19.27■□□□□ 0.68
CLN3-201ENST00000333496 BOLA2Q9H3K6 86 aa19.27■□□□□ 0.68
CLN3-201ENST00000333496 SIPA1L1O43166 1804 aa19.27■□□□□ 0.67
CLN3-201ENST00000333496 NPM3O75607 178 aaKnown RBP19.26■□□□□ 0.67
CLN3-201ENST00000333496 CYP7A1P22680 504 aa19.26■□□□□ 0.67
CLN3-201ENST00000333496 MAGEB6Q8N7X4 407 aa19.26■□□□□ 0.67
CLN3-201ENST00000333496 EXOC6Q8TAG9 804 aa19.26■□□□□ 0.67
CLN3-201ENST00000333496 DNAJC2Q99543 621 aaKnown RBP19.26■□□□□ 0.67
CLN3-201ENST00000333496 ELP3Q9H9T3 547 aa19.26■□□□□ 0.67
CLN3-201ENST00000333496 MYH1P12882 1939 aa19.26■□□□□ 0.67
CLN3-201ENST00000333496 GOLIM4O00461 696 aa19.25■□□□□ 0.67
CLN3-201ENST00000333496 CA12O43570 354 aa19.25■□□□□ 0.67
CLN3-201ENST00000333496 SLURP2P0DP57 97 aa19.25■□□□□ 0.67
CLN3-201ENST00000333496 ZBTB48P10074 688 aaPredicted RBP19.25■□□□□ 0.67
CLN3-201ENST00000333496 TM4SF4P48230 202 aa19.25■□□□□ 0.67
CLN3-201ENST00000333496 DCAF15Q66K64 600 aa19.25■□□□□ 0.67
CLN3-201ENST00000333496 REM2Q8IYK8 340 aaPredicted RBP19.25■□□□□ 0.67
CLN3-201ENST00000333496 CNKSR2Q8WXI2 1034 aa19.25■□□□□ 0.67
CLN3-201ENST00000333496 ZKSCAN4Q969J2 545 aaPredicted RBP19.25■□□□□ 0.67
CLN3-201ENST00000333496 WRNIP1Q96S55 665 aa19.25■□□□□ 0.67
CLN3-201ENST00000333496 ZNF341Q9BYN7 854 aa19.25■□□□□ 0.67
CLN3-201ENST00000333496 RNF186Q9NXI6 227 aa19.25■□□□□ 0.67
CLN3-201ENST00000333496 BAG3O95817 575 aa19.25■□□□□ 0.67
CLN3-201ENST00000333496 DYNLL1P63167 89 aaKnown RBP19.25■□□□□ 0.67
CLN3-201ENST00000333496 MAP3K12Q12852 859 aa19.25■□□□□ 0.67
CLN3-201ENST00000333496 AAMPQ13685 434 aa19.25■□□□□ 0.67
CLN3-201ENST00000333496 TTF1Q15361 905 aaPredicted RBP19.25■□□□□ 0.67
CLN3-201ENST00000333496 ZSCAN29Q8IWY8 852 aaPredicted RBP19.25■□□□□ 0.67
CLN3-201ENST00000333496 TEX11Q8IYF3 940 aa19.25■□□□□ 0.67
CLN3-201ENST00000333496 HAUS7Q99871 368 aa19.25■□□□□ 0.67
CLN3-201ENST00000333496 NOL10Q9BSC4 688 aaKnown RBP19.25■□□□□ 0.67
CLN3-201ENST00000333496 PRDM10Q9NQV6 1147 aa19.25■□□□□ 0.67
CLN3-201ENST00000333496 ZNF112Q9UJU3 913 aa19.25■□□□□ 0.67
CLN3-201ENST00000333496 SNCAIPQ9Y6H5 919 aa19.25■□□□□ 0.67
CLN3-201ENST00000333496 INPP5BP32019 993 aa19.24■□□□□ 0.67
CLN3-201ENST00000333496 MAP3K10Q02779 954 aa19.24■□□□□ 0.67
CLN3-201ENST00000333496 HDAC1Q13547 482 aaPredicted RBP19.24■□□□□ 0.67
CLN3-201ENST00000333496 OPTNQ96CV9 577 aa19.24■□□□□ 0.67
CLN3-201ENST00000333496 CSADQ9Y600 493 aa19.24■□□□□ 0.67
CLN3-201ENST00000333496 COL2A1P02458 1487 aaPredicted RBP19.23■□□□□ 0.67
CLN3-201ENST00000333496 TRPA1O75762 1119 aa19.23■□□□□ 0.67
CLN3-201ENST00000333496 MIGA1Q8NAN2 632 aa19.23■□□□□ 0.67
CLN3-201ENST00000333496 OSBPL5Q9H0X9 879 aaPredicted RBP19.23■□□□□ 0.67
CLN3-201ENST00000333496 PAG1Q9NWQ8 432 aa19.23■□□□□ 0.67
CLN3-201ENST00000333496 PLCG2P16885 1265 aa19.22■□□□□ 0.67
CLN3-201ENST00000333496 TGFBRAP1Q8WUH2 860 aa19.22■□□□□ 0.67
CLN3-201ENST00000333496 ECHDC1Q9NTX5 307 aa19.22■□□□□ 0.67
CLN3-201ENST00000333496 SAGE1Q9NXZ1 904 aa19.22■□□□□ 0.67
CLN3-201ENST00000333496 ATAD5Q96QE3 1844 aa19.22■□□□□ 0.67
CLN3-201ENST00000333496 PHF20L1A8MW92 1017 aa19.22■□□□□ 0.67
CLN3-201ENST00000333496 PDE6AP16499 860 aa19.22■□□□□ 0.67
CLN3-201ENST00000333496 SLC9C2Q5TAH2 1124 aa19.22■□□□□ 0.67
CLN3-201ENST00000333496 TSHZ3Q63HK5 1081 aa19.22■□□□□ 0.67
CLN3-201ENST00000333496 TMED8Q6PL24 325 aaPredicted RBP19.22■□□□□ 0.67
CLN3-201ENST00000333496 PHIPQ8WWQ0 1821 aa19.21■□□□□ 0.67
CLN3-201ENST00000333496 DOCK1Q14185 1865 aa19.21■□□□□ 0.67
CLN3-201ENST00000333496 TCRBV5S4A2TA0A5A2 114 aa19.21■□□□□ 0.67
CLN3-201ENST00000333496 MANSC4A6NHS7 340 aaPredicted RBP19.21■□□□□ 0.67
CLN3-201ENST00000333496 SPDYE5A6NIY4 337 aa19.21■□□□□ 0.67
CLN3-201ENST00000333496 FLT1P17948 1338 aa19.21■□□□□ 0.67
CLN3-201ENST00000333496 SREBF2Q12772 1141 aa19.21■□□□□ 0.67
CLN3-201ENST00000333496 OTUD7AQ8TE49 926 aaPredicted RBP19.21■□□□□ 0.67
CLN3-201ENST00000333496 MS4A4AQ96JQ5 239 aa19.21■□□□□ 0.67
CLN3-201ENST00000333496 RIOK1Q9BRS2 568 aaKnown RBP19.21■□□□□ 0.67
CLN3-201ENST00000333496 ZNF532Q9HCE3 1301 aa19.2■□□□□ 0.66
CLN3-201ENST00000333496 SLFNL1Q499Z3 407 aa19.2■□□□□ 0.66
CLN3-201ENST00000333496 MAPKAPK5Q8IW41 473 aa19.2■□□□□ 0.66
CLN3-201ENST00000333496 GCC1Q96CN9 775 aa19.2■□□□□ 0.66
CLN3-201ENST00000333496 OTUD5Q96G74 571 aa19.2■□□□□ 0.66
CLN3-201ENST00000333496 CHGBP05060 677 aa19.19■□□□□ 0.66
CLN3-201ENST00000333496 ERO1BQ86YB8 467 aa19.19■□□□□ 0.66
CLN3-201ENST00000333496 DDX60LQ5H9U9 1706 aaKnown RBP19.19■□□□□ 0.66
CLN3-201ENST00000333496 PTPRFP10586 1907 aa19.19■□□□□ 0.66
CLN3-201ENST00000333496 NAV1Q8NEY1 1877 aa19.19■□□□□ 0.66
CLN3-201ENST00000333496 SALL3Q9BXA9 1300 aa19.18■□□□□ 0.66
CLN3-201ENST00000333496 TESPA1A2RU30 521 aaPredicted RBP19.18■□□□□ 0.66
CLN3-201ENST00000333496 FAM196BA6NMK8 535 aa19.18■□□□□ 0.66
CLN3-201ENST00000333496 IGF2BP3O00425 579 aaKnown RBP eCLIP19.18■□□□□ 0.66
CLN3-201ENST00000333496 TBC1D12O60347 775 aa19.18■□□□□ 0.66
CLN3-201ENST00000333496 INHBEP58166 350 aa19.18■□□□□ 0.66
CLN3-201ENST00000333496 NOL9Q5SY16 702 aaKnown RBP19.18■□□□□ 0.66
CLN3-201ENST00000333496 ANKRD45Q5TZF3 282 aa19.18■□□□□ 0.66
CLN3-201ENST00000333496 IFNL1Q8IU54 200 aa19.18■□□□□ 0.66
CLN3-201ENST00000333496 PTPN18Q99952 460 aa19.18■□□□□ 0.66
CLN3-201ENST00000333496 IGHDP01880 384 aa19.18■□□□□ 0.66
CLN3-201ENST00000333496 ADD2P35612 726 aa19.18■□□□□ 0.66
CLN3-201ENST00000333496 BAZ2AQ9UIF9 1905 aaKnown RBP19.17■□□□□ 0.66
CLN3-201ENST00000333496 MAGEB6P1A0A0J9YX57 407 aa19.17■□□□□ 0.66
CLN3-201ENST00000333496 IRF6O14896 467 aa19.17■□□□□ 0.66
CLN3-201ENST00000333496 IRX6P78412 446 aaPredicted RBP19.17■□□□□ 0.66
CLN3-201ENST00000333496 CERS3Q8IU89 383 aa19.17■□□□□ 0.66
CLN3-201ENST00000333496 PI4K2BQ8TCG2 481 aa19.17■□□□□ 0.66
CLN3-201ENST00000333496 GPATCH3Q96I76 525 aa19.17■□□□□ 0.66
CLN3-201ENST00000333496 PALD1Q9ULE6 856 aa19.17■□□□□ 0.66
CLN3-201ENST00000333496 TTC41PQ6P2S7 1318 aa19.16■□□□□ 0.66
CLN3-201ENST00000333496 TBC1D8O95759 1140 aa19.16■□□□□ 0.66
CLN3-201ENST00000333496 PPATQ06203 517 aa19.16■□□□□ 0.66
CLN3-201ENST00000333496 PPIL2Q13356 520 aa19.16■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms