RNA–Protein interactions for RNA: ENST00000560715.5

TSPAN3-209, Transcript of tetraspanin 3, humanhuman

TSL 2

Gene TSPAN3, Length 2,892 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TSPAN3-209ENST00000560715 ZNF428Q96B54 188 aa10.38□□□□□ -0.75
TSPAN3-209ENST00000560715 TRIM41Q8WV44 630 aa10.36□□□□□ -0.75
TSPAN3-209ENST00000560715 SLC24A3Q9HC58 644 aa10.34□□□□□ -0.75
TSPAN3-209ENST00000560715 PROM2Q8N271 834 aa10.33□□□□□ -0.76
TSPAN3-209ENST00000560715 NKX1-1Q15270 411 aaPredicted RBP10.33□□□□□ -0.76
TSPAN3-209ENST00000560715 SPOCK2Q92563 424 aa10.32□□□□□ -0.76
TSPAN3-209ENST00000560715 ZMYND15Q9H091 742 aa10.32□□□□□ -0.76
TSPAN3-209ENST00000560715 MKRN4PQ13434 485 aaPredicted RBP10.32□□□□□ -0.76
TSPAN3-209ENST00000560715 ZBTB7CA1YPR0 619 aa10.31□□□□□ -0.76
TSPAN3-209ENST00000560715 DHX30Q7L2E3 1194 aaKnown RBP eCLIP10.3□□□□□ -0.76
TSPAN3-209ENST00000560715 RSPH6AQ9H0K4 717 aa10.3□□□□□ -0.76
TSPAN3-209ENST00000560715 MYO15BQ96JP2 1530 aa10.29□□□□□ -0.76
TSPAN3-209ENST00000560715 APBB1O00213 710 aa10.28□□□□□ -0.76
TSPAN3-209ENST00000560715 ACIN1Q9UKV3 1341 aaKnown RBP10.28□□□□□ -0.76
TSPAN3-209ENST00000560715 PDIA4P13667 645 aaKnown RBP10.27□□□□□ -0.77
TSPAN3-209ENST00000560715 CIZ1Q9ULV3 898 aaPredicted RBP10.25□□□□□ -0.77
TSPAN3-209ENST00000560715 GPBP1L1Q9HC44 474 aaPredicted RBP10.24□□□□□ -0.77
TSPAN3-209ENST00000560715 BCL11AQ9H165 835 aa10.24□□□□□ -0.77
TSPAN3-209ENST00000560715 ZEB1P37275 1124 aaPredicted RBP10.23□□□□□ -0.77
TSPAN3-209ENST00000560715 KCTD17Q8N5Z5 321 aa10.21□□□□□ -0.77
TSPAN3-209ENST00000560715 KCNV2Q8TDN2 545 aa10.21□□□□□ -0.78
TSPAN3-209ENST00000560715 RAD21O60216 631 aa10.2□□□□□ -0.78
TSPAN3-209ENST00000560715 IL27Q8NEV9 243 aa10.2□□□□□ -0.78
TSPAN3-209ENST00000560715 CHMP4AQ9BY43 222 aa10.2□□□□□ -0.78
TSPAN3-209ENST00000560715 NEUROD1Q13562 356 aa10.19□□□□□ -0.78
TSPAN3-209ENST00000560715 FOXD4L5Q5VV16 416 aaPredicted RBP10.19□□□□□ -0.78
TSPAN3-209ENST00000560715 FOXD4L4Q8WXT5 416 aaPredicted RBP10.19□□□□□ -0.78
TSPAN3-209ENST00000560715 GTPBP6O43824 516 aaPredicted RBP10.19□□□□□ -0.78
TSPAN3-209ENST00000560715 RNF25Q96BH1 459 aaPredicted RBP10.19□□□□□ -0.78
TSPAN3-209ENST00000560715 ZC3H15Q8WU90 426 aaKnown RBP10.18□□□□□ -0.78
TSPAN3-209ENST00000560715 HOXD11P31277 338 aaPredicted RBP10.18□□□□□ -0.78
TSPAN3-209ENST00000560715 CENPBP07199 599 aaPredicted RBP10.17□□□□□ -0.78
TSPAN3-209ENST00000560715 ZNF219Q9P2Y4 722 aaPredicted RBP10.16□□□□□ -0.78
TSPAN3-209ENST00000560715 NACADO15069 1562 aa10.16□□□□□ -0.78
TSPAN3-209ENST00000560715 CDK11BP21127 795 aaKnown RBP10.15□□□□□ -0.79
TSPAN3-209ENST00000560715 CDK11AQ9UQ88 783 aaPredicted RBP10.15□□□□□ -0.79
TSPAN3-209ENST00000560715 AEBP1Q8IUX7 1158 aa10.14□□□□□ -0.79
TSPAN3-209ENST00000560715 MTMR7Q9Y216 660 aa10.14□□□□□ -0.79
TSPAN3-209ENST00000560715 RBM25P49756 843 aaKnown RBP10.13□□□□□ -0.79
TSPAN3-209ENST00000560715 HS6ST3Q8IZP7 471 aa10.13□□□□□ -0.79
TSPAN3-209ENST00000560715 FAM9AQ8IZU1 332 aaPredicted RBP10.13□□□□□ -0.79
TSPAN3-209ENST00000560715 MKRN3Q13064 507 aaKnown RBP10.12□□□□□ -0.79
TSPAN3-209ENST00000560715 CCDC82Q8N4S0 544 aa10.11□□□□□ -0.79
TSPAN3-209ENST00000560715 PLCD3Q8N3E9 789 aa10.09□□□□□ -0.79
TSPAN3-209ENST00000560715 SCRIBQ14160 1630 aa10.09□□□□□ -0.79
TSPAN3-209ENST00000560715 SAMD1Q6SPF0 538 aaPredicted RBP10.07□□□□□ -0.8
TSPAN3-209ENST00000560715 DHX37Q8IY37 1157 aaKnown RBP10.07□□□□□ -0.8
TSPAN3-209ENST00000560715 RB1CC1Q8TDY2 1594 aa10.02□□□□□ -0.81
TSPAN3-209ENST00000560715 SEMA3EO15041 775 aa10.01□□□□□ -0.81
TSPAN3-209ENST00000560715 RGS22Q8NE09 1264 aa10□□□□□ -0.81
TSPAN3-209ENST00000560715 P3H3Q8IVL6 736 aa10□□□□□ -0.81
TSPAN3-209ENST00000560715 CADPS2Q86UW7 1296 aa10□□□□□ -0.81
TSPAN3-209ENST00000560715 STK25O00506 426 aa9.98□□□□□ -0.81
TSPAN3-209ENST00000560715 U3KPZ7 1027 aaPredicted RBP9.98□□□□□ -0.81
TSPAN3-209ENST00000560715 CLUAP1Q96AJ1 413 aa9.98□□□□□ -0.81
TSPAN3-209ENST00000560715 WDR70Q9NW82 654 aa9.97□□□□□ -0.81
TSPAN3-209ENST00000560715 ANP32EQ9BTT0 268 aa9.96□□□□□ -0.81
TSPAN3-209ENST00000560715 MIER1Q8N108 512 aa9.96□□□□□ -0.82
TSPAN3-209ENST00000560715 HSP90B1P14625 803 aaKnown RBP9.95□□□□□ -0.82
TSPAN3-209ENST00000560715 USP35Q9P2H5 1018 aa9.94□□□□□ -0.82
TSPAN3-209ENST00000560715 GRWD1Q9BQ67 446 aaKnown RBP eCLIP9.94□□□□□ -0.82
TSPAN3-209ENST00000560715 DCAF8L1A6NGE4 600 aa9.93□□□□□ -0.82
TSPAN3-209ENST00000560715 POLA2Q14181 598 aa9.93□□□□□ -0.82
TSPAN3-209ENST00000560715 MFAP1P55081 439 aaKnown RBP9.92□□□□□ -0.82
TSPAN3-209ENST00000560715 DMRT2Q9Y5R5 561 aa9.92□□□□□ -0.82
TSPAN3-209ENST00000560715 GZF1Q9H116 711 aaPredicted RBP9.92□□□□□ -0.82
TSPAN3-209ENST00000560715 TMCO4Q5TGY1 634 aa9.9□□□□□ -0.82
TSPAN3-209ENST00000560715 KDM4CQ9H3R0 1056 aa9.9□□□□□ -0.82
TSPAN3-209ENST00000560715 RSF1Q96T23 1441 aaPredicted RBP9.89□□□□□ -0.83
TSPAN3-209ENST00000560715 POLR3GLQ9BT43 218 aa9.89□□□□□ -0.83
TSPAN3-209ENST00000560715 ZMYND10O75800 440 aa9.87□□□□□ -0.83
TSPAN3-209ENST00000560715 UNC13AQ9UPW8 1703 aa9.86□□□□□ -0.83
TSPAN3-209ENST00000560715 FAM117AQ9C073 453 aa9.84□□□□□ -0.83
TSPAN3-209ENST00000560715 ZNF777Q9ULD5 760 aaPredicted RBP9.84□□□□□ -0.83
TSPAN3-209ENST00000560715 DIEXFQ68CQ4 756 aaKnown RBP9.83□□□□□ -0.84
TSPAN3-209ENST00000560715 RETREG2Q8NC44 543 aa9.81□□□□□ -0.84
TSPAN3-209ENST00000560715 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP9.81□□□□□ -0.84
TSPAN3-209ENST00000560715 HNRNPUL2Q1KMD3 747 aaKnown RBP9.81□□□□□ -0.84
TSPAN3-209ENST00000560715 BCL11BQ9C0K0 894 aaPredicted RBP9.81□□□□□ -0.84
TSPAN3-209ENST00000560715 STK24Q9Y6E0 443 aa9.8□□□□□ -0.84
TSPAN3-209ENST00000560715 CECR2Q9BXF3 1484 aa9.8□□□□□ -0.84
TSPAN3-209ENST00000560715 PUS7Q96PZ0 661 aaKnown RBP9.8□□□□□ -0.84
TSPAN3-209ENST00000560715 IRF5Q13568 498 aa9.79□□□□□ -0.84
TSPAN3-209ENST00000560715 MROH2BQ7Z745 1585 aa9.78□□□□□ -0.84
TSPAN3-209ENST00000560715 HMGB1P09429 215 aaKnown RBP9.77□□□□□ -0.85
TSPAN3-209ENST00000560715 BAZ1AQ9NRL2 1556 aaPredicted RBP9.76□□□□□ -0.85
TSPAN3-209ENST00000560715 ZNF316A6NFI3 1004 aaPredicted RBP9.76□□□□□ -0.85
TSPAN3-209ENST00000560715 FBXW7Q969H0 707 aa9.76□□□□□ -0.85
TSPAN3-209ENST00000560715 RIOK3O14730 519 aaKnown RBP9.74□□□□□ -0.85
TSPAN3-209ENST00000560715 TESPA1A2RU30 521 aaPredicted RBP9.73□□□□□ -0.85
TSPAN3-209ENST00000560715 WIZO95785 1651 aa9.73□□□□□ -0.85
TSPAN3-209ENST00000560715 TRAK2O60296 914 aa9.73□□□□□ -0.85
TSPAN3-209ENST00000560715 E9PSI1 815 aa9.73□□□□□ -0.85
TSPAN3-209ENST00000560715 FAM177A1Q8N128 213 aaPredicted RBP9.73□□□□□ -0.85
TSPAN3-209ENST00000560715 KRI1Q8N9T8 703 aaKnown RBP9.72□□□□□ -0.85
TSPAN3-209ENST00000560715 RBM26Q5T8P6 1007 aaKnown RBP9.71□□□□□ -0.85
TSPAN3-209ENST00000560715 TRAIPQ9BWF2 469 aa9.71□□□□□ -0.85
TSPAN3-209ENST00000560715 BICRAQ9NZM4 1560 aa9.71□□□□□ -0.86
TSPAN3-209ENST00000560715 BARGINQ6ZT62 677 aa9.7□□□□□ -0.86
TSPAN3-209ENST00000560715 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP9.7□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms