RNA–Protein interactions for RNA: ENST00000531466.1

PTPRK-220, Transcript of protein tyrosine phosphatase, receptor type K, humanhuman

TSL 5

Gene PTPRK, Length 311 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRK-220ENST00000531466 RASEFQ8IZ41 740 aa17.41■□□□□ 0.38
PTPRK-220ENST00000531466 PELP1Q8IZL8 1130 aaKnown RBP17.4■□□□□ 0.38
PTPRK-220ENST00000531466 KIF12Q96FN5 646 aa17.34■□□□□ 0.37
PTPRK-220ENST00000531466 ATMINO43313 823 aaPredicted RBP17.31■□□□□ 0.36
PTPRK-220ENST00000531466 ASTLQ6HA08 431 aaPredicted RBP17.31■□□□□ 0.36
PTPRK-220ENST00000531466 POTEB2H3BUK9 544 aa17.28■□□□□ 0.36
PTPRK-220ENST00000531466 MAP3K13O43283 966 aa17.26■□□□□ 0.35
PTPRK-220ENST00000531466 ZBTB47Q9UFB7 747 aaPredicted RBP17.26■□□□□ 0.35
PTPRK-220ENST00000531466 METRNQ9UJH8 293 aa17.24■□□□□ 0.35
PTPRK-220ENST00000531466 NUBP1P53384 320 aa17.22■□□□□ 0.35
PTPRK-220ENST00000531466 TRPC6Q9Y210 931 aa17.22■□□□□ 0.35
PTPRK-220ENST00000531466 SLC39A7Q92504 469 aa17.2■□□□□ 0.34
PTPRK-220ENST00000531466 ATN1P54259 1190 aaPredicted RBP17.19■□□□□ 0.34
PTPRK-220ENST00000531466 OTUD5Q96G74 571 aa17.19■□□□□ 0.34
PTPRK-220ENST00000531466 C7P10643 843 aa17.17■□□□□ 0.34
PTPRK-220ENST00000531466 BMP2KQ9NSY1 1161 aaPredicted RBP17.16■□□□□ 0.34
PTPRK-220ENST00000531466 FBXO3Q9UK99 471 aa17.13■□□□□ 0.33
PTPRK-220ENST00000531466 FAM212AQ96EL1 285 aa17.11■□□□□ 0.33
PTPRK-220ENST00000531466 TIE1P35590 1138 aa17.09■□□□□ 0.33
PTPRK-220ENST00000531466 PCDHB13Q9Y5F0 798 aa17.09■□□□□ 0.33
PTPRK-220ENST00000531466 POTEJP0CG39 1038 aa17.05■□□□□ 0.32
PTPRK-220ENST00000531466 TTLL13PA6NNM8 815 aa17.03■□□□□ 0.32
PTPRK-220ENST00000531466 SGIP1Q9BQI5 828 aa17.02■□□□□ 0.32
PTPRK-220ENST00000531466 IFNL1Q8IU54 200 aa17■□□□□ 0.31
PTPRK-220ENST00000531466 DCAF8Q5TAQ9 597 aa16.98■□□□□ 0.31
PTPRK-220ENST00000531466 POTEFA5A3E0 1075 aa16.97■□□□□ 0.31
PTPRK-220ENST00000531466 VASPP50552 380 aaPredicted RBP16.97■□□□□ 0.31
PTPRK-220ENST00000531466 KLHL34Q8N239 644 aa16.93■□□□□ 0.3
PTPRK-220ENST00000531466 TRIM35Q9UPQ4 493 aa16.93■□□□□ 0.3
PTPRK-220ENST00000531466 MAMSTRQ6ZN01 415 aa16.92■□□□□ 0.3
PTPRK-220ENST00000531466 PYGBP11216 843 aa16.91■□□□□ 0.3
PTPRK-220ENST00000531466 COLQQ9Y215 455 aaPredicted RBP16.9■□□□□ 0.3
PTPRK-220ENST00000531466 SEC24BO95487 1268 aa16.89■□□□□ 0.29
PTPRK-220ENST00000531466 TMEM106CQ9BVX2 250 aa16.88■□□□□ 0.29
PTPRK-220ENST00000531466 SCUBE2Q9NQ36 999 aa16.86■□□□□ 0.29
PTPRK-220ENST00000531466 IER5LQ5T953 404 aa16.82■□□□□ 0.28
PTPRK-220ENST00000531466 PCDHB8Q9UN66 801 aa16.8■□□□□ 0.28
PTPRK-220ENST00000531466 GSE1Q14687 1217 aa16.75■□□□□ 0.27
PTPRK-220ENST00000531466 POTEMA6NI47 508 aa16.72■□□□□ 0.27
PTPRK-220ENST00000531466 PLCG2P16885 1265 aa16.69■□□□□ 0.26
PTPRK-220ENST00000531466 POTEGQ6S5H5 508 aa16.69■□□□□ 0.26
PTPRK-220ENST00000531466 IFNLR1Q8IU57 520 aaPredicted RBP16.67■□□□□ 0.26
PTPRK-220ENST00000531466 FAM163AQ96GL9 167 aaPredicted RBP16.66■□□□□ 0.26
PTPRK-220ENST00000531466 IRX5P78411 483 aaPredicted RBP16.65■□□□□ 0.26
PTPRK-220ENST00000531466 PLSCR2Q9NRY7 297 aa16.65■□□□□ 0.26
PTPRK-220ENST00000531466 LCE2DQ5TA82 110 aaPredicted RBP16.61■□□□□ 0.25
PTPRK-220ENST00000531466 ZNF467Q7Z7K2 595 aaPredicted RBP16.61■□□□□ 0.25
PTPRK-220ENST00000531466 SPOCK2Q92563 424 aa16.61■□□□□ 0.25
PTPRK-220ENST00000531466 CHRM1P11229 460 aaPredicted RBP16.59■□□□□ 0.25
PTPRK-220ENST00000531466 OCEL1Q9H607 264 aa16.57■□□□□ 0.24
PTPRK-220ENST00000531466 CIZ1Q9ULV3 898 aaPredicted RBP16.57■□□□□ 0.24
PTPRK-220ENST00000531466 SLAIN1Q8ND83 568 aa16.54■□□□□ 0.24
PTPRK-220ENST00000531466 PSEN1P49768 467 aa16.5■□□□□ 0.23
PTPRK-220ENST00000531466 GOLGA2Q08379 1002 aa16.49■□□□□ 0.23
PTPRK-220ENST00000531466 MKRN3Q13064 507 aaKnown RBP16.46■□□□□ 0.23
PTPRK-220ENST00000531466 PDAP1Q13442 181 aaKnown RBP16.42■□□□□ 0.22
PTPRK-220ENST00000531466 PDCD7Q8N8D1 485 aaKnown RBP16.42■□□□□ 0.22
PTPRK-220ENST00000531466 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP16.37■□□□□ 0.212e-10■□□□□ 8.1
PTPRK-220ENST00000531466 EIF2AK3Q9NZJ5 1116 aaKnown RBP16.37■□□□□ 0.21
PTPRK-220ENST00000531466 PCDH10Q9P2E7 1040 aa16.37■□□□□ 0.21
PTPRK-220ENST00000531466 ST18O60284 1047 aa16.32■□□□□ 0.2
PTPRK-220ENST00000531466 CABP2Q9NPB3 220 aa16.32■□□□□ 0.2
PTPRK-220ENST00000531466 L3MBTL3Q96JM7 780 aaPredicted RBP16.29■□□□□ 0.2
PTPRK-220ENST00000531466 C3orf67Q6ZVT6 689 aa16.28■□□□□ 0.2
PTPRK-220ENST00000531466 TRIM41Q8WV44 630 aa16.24■□□□□ 0.19
PTPRK-220ENST00000531466 DPY19L2Q6NUT2 758 aa16.23■□□□□ 0.19
PTPRK-220ENST00000531466 ILDR1Q86SU0 546 aaPredicted RBP16.22■□□□□ 0.19
PTPRK-220ENST00000531466 SNPHO15079 494 aa16.19■□□□□ 0.18
PTPRK-220ENST00000531466 CDAN1Q8IWY9 1227 aa16.19■□□□□ 0.18
PTPRK-220ENST00000531466 EFCAB3Q8N7B9 438 aa16.12■□□□□ 0.17
PTPRK-220ENST00000531466 G3V3G9 751 aa16.11■□□□□ 0.17
PTPRK-220ENST00000531466 RNF25Q96BH1 459 aaPredicted RBP16.11■□□□□ 0.17
PTPRK-220ENST00000531466 TMEM121BQ9BXQ6 578 aaPredicted RBP16.11■□□□□ 0.17
PTPRK-220ENST00000531466 BOLA1Q9Y3E2 137 aa16.11■□□□□ 0.17
PTPRK-220ENST00000531466 RIOK3O14730 519 aaKnown RBP16.1■□□□□ 0.17
PTPRK-220ENST00000531466 MARVELD3Q96A59 401 aa16.1■□□□□ 0.17
PTPRK-220ENST00000531466 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP16.03■□□□□ 0.16
PTPRK-220ENST00000531466 ZFP91Q96JP5 570 aaPredicted RBP16.03■□□□□ 0.16
PTPRK-220ENST00000531466 VGFO15240 615 aaPredicted RBP15.99■□□□□ 0.15
PTPRK-220ENST00000531466 EMP3P54852 163 aa15.96■□□□□ 0.15
PTPRK-220ENST00000531466 SOX12O15370 315 aa15.92■□□□□ 0.14
PTPRK-220ENST00000531466 PHF8Q9UPP1 1060 aa15.91■□□□□ 0.14
PTPRK-220ENST00000531466 HOXB3P14651 431 aaPredicted RBP15.9■□□□□ 0.14
PTPRK-220ENST00000531466 MS4A4AQ96JQ5 239 aa15.9■□□□□ 0.14
PTPRK-220ENST00000531466 MICALL2Q8IY33 904 aa15.89■□□□□ 0.13
PTPRK-220ENST00000531466 FAM205CA6NFA0 338 aa15.86■□□□□ 0.13
PTPRK-220ENST00000531466 BCL11BQ9C0K0 894 aaPredicted RBP15.85■□□□□ 0.13
PTPRK-220ENST00000531466 POTEB3A0JP26 581 aa15.84■□□□□ 0.13
PTPRK-220ENST00000531466 POTEBQ6S5H4 581 aa15.84■□□□□ 0.13
PTPRK-220ENST00000531466 HS3ST6Q96QI5 342 aa15.84■□□□□ 0.13
PTPRK-220ENST00000531466 TMEM92Q6UXU6 159 aa15.82■□□□□ 0.12
PTPRK-220ENST00000531466 ZNF710Q8N1W2 664 aa15.82■□□□□ 0.12
PTPRK-220ENST00000531466 ECM2O94769 699 aaPredicted RBP15.81■□□□□ 0.12
PTPRK-220ENST00000531466 STK24Q9Y6E0 443 aa15.81■□□□□ 0.12
PTPRK-220ENST00000531466 DOK7Q18PE1 504 aa15.8■□□□□ 0.12
PTPRK-220ENST00000531466 TAOK2Q9UL54 1235 aa15.8■□□□□ 0.12
PTPRK-220ENST00000531466 SPNS2Q8IVW8 549 aa15.79■□□□□ 0.12
PTPRK-220ENST00000531466 NLRP6P59044 892 aa15.76■□□□□ 0.11
PTPRK-220ENST00000531466 STK25O00506 426 aa15.75■□□□□ 0.11
PTPRK-220ENST00000531466 HOXB1P14653 301 aaPredicted RBP15.75■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms