RNA–Protein interactions for RNA: ENST00000500704.6

USP45-208, Transcript of ubiquitin specific peptidase 45, human

APPRIS P1 TSL 5 BASIC

Gene USP45, Length 5,826 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
USP45-208	ENST00000500704	TAF7L	Q5H9L4	462 aa		4.08	□□□□□ -1.76
USP45-208	ENST00000500704	TRH	P20396	242 aa	Predicted RBP	4.08	□□□□□ -1.76
USP45-208	ENST00000500704	PTMS	P20962	102 aa		4.07	□□□□□ -1.76
USP45-208	ENST00000500704	ANP32A	P39687	249 aa	Known RBP	4.07	□□□□□ -1.76
USP45-208	ENST00000500704	KLHL34	Q8N239	644 aa		4.06	□□□□□ -1.76
USP45-208	ENST00000500704	SALL2	Q9Y467	1007 aa	Predicted RBP	4.06	□□□□□ -1.76
USP45-208	ENST00000500704	RSPH6A	Q9H0K4	717 aa		4.06	□□□□□ -1.76
USP45-208	ENST00000500704	DCAF8L1	A6NGE4	600 aa		4.05	□□□□□ -1.76
USP45-208	ENST00000500704	TRIM44	Q96DX7	344 aa	Predicted RBP	4.05	□□□□□ -1.76
USP45-208	ENST00000500704	VASP	P50552	380 aa	Predicted RBP	4.04	□□□□□ -1.76
USP45-208	ENST00000500704	NEFM	P07197	916 aa		4.04	□□□□□ -1.76
USP45-208	ENST00000500704	RGL2	O15211	777 aa		4.04	□□□□□ -1.76
USP45-208	ENST00000500704	HSP90AA2P	Q14568	343 aa	Predicted RBP	4.04	□□□□□ -1.76
USP45-208	ENST00000500704	HSP90AA1	P07900	732 aa	Known RBP	4.03	□□□□□ -1.76
USP45-208	ENST00000500704	MYCN	P04198	464 aa	Predicted RBP	4.03	□□□□□ -1.76
USP45-208	ENST00000500704	TRIM41	Q8WV44	630 aa		4.03	□□□□□ -1.77
USP45-208	ENST00000500704	HMGB1	P09429	215 aa	Known RBP	4.02	□□□□□ -1.77
USP45-208	ENST00000500704	APP	P05067	770 aa		4.01	□□□□□ -1.77
USP45-208	ENST00000500704	BRD2	P25440	801 aa	Known RBP	4.01	□□□□□ -1.77
USP45-208	ENST00000500704	CANX	P27824	592 aa	Known RBP	4.01	□□□□□ -1.77
USP45-208	ENST00000500704	ZBTB47	Q9UFB7	747 aa	Predicted RBP	4.01	□□□□□ -1.77
USP45-208	ENST00000500704	RNF216	Q9NWF9	866 aa	Predicted RBP	4.01	□□□□□ -1.77
USP45-208	ENST00000500704	BCL11B	Q9C0K0	894 aa	Predicted RBP	4	□□□□□ -1.77
USP45-208	ENST00000500704	MKRN4P	Q13434	485 aa	Predicted RBP	4	□□□□□ -1.77
USP45-208	ENST00000500704	ZMYND15	Q9H091	742 aa		3.99	□□□□□ -1.77
USP45-208	ENST00000500704	UBTF	P17480	764 aa	Known RBP	3.99	□□□□□ -1.77
USP45-208	ENST00000500704	CHGA	P10645	457 aa	Known RBP	3.99	□□□□□ -1.77
USP45-208	ENST00000500704	ANP32B	Q92688	251 aa	Known RBP	3.98	□□□□□ -1.77
USP45-208	ENST00000500704	HSP90B1	P14625	803 aa	Known RBP	3.98	□□□□□ -1.77
USP45-208	ENST00000500704	RBM19	Q9Y4C8	960 aa	Known RBP	3.97	□□□□□ -1.77
USP45-208	ENST00000500704	RBM10	P98175	930 aa	Known RBP	3.97	□□□□□ -1.77
USP45-208	ENST00000500704	SPDYE4	A6NLX3	237 aa		3.96	□□□□□ -1.78
USP45-208	ENST00000500704	PNN	Q9H307	717 aa	Known RBP	3.96	□□□□□ -1.78
USP45-208	ENST00000500704	NOP58	Q9Y2X3	529 aa	Known RBP	3.96	□□□□□ -1.78
USP45-208	ENST00000500704	CCDC9	Q9Y3X0	531 aa	Known RBP	3.96	□□□□□ -1.78
USP45-208	ENST00000500704	FGD1	P98174	961 aa		3.96	□□□□□ -1.78
USP45-208	ENST00000500704	PATL2	C9JE40	543 aa	Known RBP	3.95	□□□□□ -1.78
USP45-208	ENST00000500704	DHX37	Q8IY37	1157 aa	Known RBP	3.95	□□□□□ -1.78
USP45-208	ENST00000500704	DNTTIP2	Q5QJE6	756 aa	Known RBP	3.95	□□□□□ -1.78
USP45-208	ENST00000500704	SUPT16H	Q9Y5B9	1047 aa	Known RBP	3.95	□□□□□ -1.78
USP45-208	ENST00000500704	PPM1G	O15355	546 aa	Predicted RBP	3.95	□□□□□ -1.78
USP45-208	ENST00000500704	PTMA	P06454	111 aa	Known RBP	3.95	□□□□□ -1.78
USP45-208	ENST00000500704	TMEM132A	Q24JP5	1023 aa		3.94	□□□□□ -1.78
USP45-208	ENST00000500704	ARID4B	Q4LE39	1312 aa	Predicted RBP	3.94	□□□□□ -1.78
USP45-208	ENST00000500704	ECM2	O94769	699 aa	Predicted RBP	3.94	□□□□□ -1.78
USP45-208	ENST00000500704	BBX	Q8WY36	941 aa	Predicted RBP	3.94	□□□□□ -1.78
USP45-208	ENST00000500704	CHMP4A	Q9BY43	222 aa		3.94	□□□□□ -1.78
USP45-208	ENST00000500704	TNNT3	P45378	269 aa	Predicted RBP	3.93	□□□□□ -1.78
USP45-208	ENST00000500704	ARID3A	Q99856	593 aa		3.93	□□□□□ -1.78
USP45-208	ENST00000500704	SPRYD3	Q8NCJ5	442 aa		3.92	□□□□□ -1.78
USP45-208	ENST00000500704	ZNF526	Q8TF50	670 aa	Predicted RBP	3.92	□□□□□ -1.78
USP45-208	ENST00000500704	HOXD11	P31277	338 aa	Predicted RBP	3.92	□□□□□ -1.78
USP45-208	ENST00000500704	USP35	Q9P2H5	1018 aa		3.92	□□□□□ -1.78
USP45-208	ENST00000500704	FBXO3	Q9UK99	471 aa		3.92	□□□□□ -1.78
USP45-208	ENST00000500704		U3KPZ7	1027 aa	Predicted RBP	3.92	□□□□□ -1.78
USP45-208	ENST00000500704	NAP1L2	Q9ULW6	460 aa	Predicted RBP	3.92	□□□□□ -1.78
USP45-208	ENST00000500704	RRP9	O43818	475 aa	Known RBP	3.91	□□□□□ -1.78
USP45-208	ENST00000500704	RNF25	Q96BH1	459 aa	Predicted RBP	3.91	□□□□□ -1.78
USP45-208	ENST00000500704	HNRNPUL2-BSCL2	H3BQZ7	746 aa	Predicted RBP	3.91	□□□□□ -1.78
USP45-208	ENST00000500704	ITGAE	P38570	1179 aa		3.9	□□□□□ -1.79
USP45-208	ENST00000500704	IL27	Q8NEV9	243 aa		3.9	□□□□□ -1.79
USP45-208	ENST00000500704	DNAJC5B	Q9UF47	199 aa		3.9	□□□□□ -1.79
USP45-208	ENST00000500704	ATXN8OS	P0DMR3	200 aa		3.9	□□□□□ -1.79
USP45-208	ENST00000500704	NKX1-1	Q15270	411 aa	Predicted RBP	3.9	□□□□□ -1.79
USP45-208	ENST00000500704	BCCIP	Q9P287	314 aa	Known RBP eCLIP	3.9	□□□□□ -1.79
USP45-208	ENST00000500704	CALR	P27797	417 aa	Known RBP	3.89	□□□□□ -1.79
USP45-208	ENST00000500704	AAMP	Q13685	434 aa		3.89	□□□□□ -1.79
USP45-208	ENST00000500704	LAS1L	Q9Y4W2	734 aa	Known RBP	3.89	□□□□□ -1.79
USP45-208	ENST00000500704	GRWD1	Q9BQ67	446 aa	Known RBP eCLIP	3.88	□□□□□ -1.79	6e-6	■□□□□ 8.2
USP45-208	ENST00000500704	L1TD1	Q5T7N2	865 aa	Known RBP	3.88	□□□□□ -1.79
USP45-208	ENST00000500704	WWC1	Q8IX03	1113 aa		3.88	□□□□□ -1.79
USP45-208	ENST00000500704	CIZ1	Q9ULV3	898 aa	Predicted RBP	3.87	□□□□□ -1.79
USP45-208	ENST00000500704	FANCI	Q9NVI1	1328 aa		3.87	□□□□□ -1.79
USP45-208	ENST00000500704	CHMP4B	Q9H444	224 aa	Known RBP	3.87	□□□□□ -1.79
USP45-208	ENST00000500704	IRX6	P78412	446 aa	Predicted RBP	3.87	□□□□□ -1.79
USP45-208	ENST00000500704	PSMD1	Q99460	953 aa		3.87	□□□□□ -1.79
USP45-208	ENST00000500704	DMRT2	Q9Y5R5	561 aa		3.87	□□□□□ -1.79
USP45-208	ENST00000500704	ARID3C	A6NKF2	412 aa		3.87	□□□□□ -1.79
USP45-208	ENST00000500704	SPINK5	Q9NQ38	1064 aa	Predicted RBP	3.87	□□□□□ -1.79
USP45-208	ENST00000500704	DDRGK1	Q96HY6	314 aa		3.86	□□□□□ -1.79
USP45-208	ENST00000500704	PLCD4	Q9BRC7	762 aa		3.86	□□□□□ -1.79
USP45-208	ENST00000500704	ZNF219	Q9P2Y4	722 aa	Predicted RBP	3.86	□□□□□ -1.79
USP45-208	ENST00000500704	MAP7D2	Q96T17	732 aa		3.86	□□□□□ -1.79
USP45-208	ENST00000500704	MIER1	Q8N108	512 aa		3.86	□□□□□ -1.79
USP45-208	ENST00000500704	CC2D1B	Q5T0F9	858 aa	Known RBP	3.85	□□□□□ -1.79
USP45-208	ENST00000500704	TAF3	Q5VWG9	929 aa		3.85	□□□□□ -1.79
USP45-208	ENST00000500704	IRX3	P78415	501 aa	Predicted RBP	3.85	□□□□□ -1.79
USP45-208	ENST00000500704	CLGN	O14967	610 aa		3.85	□□□□□ -1.79
USP45-208	ENST00000500704	OS9	Q13438	667 aa	Predicted RBP	3.84	□□□□□ -1.79
USP45-208	ENST00000500704	CLSTN1	O94985	981 aa		3.84	□□□□□ -1.8
USP45-208	ENST00000500704	BRPF1	P55201	1214 aa	Predicted RBP	3.84	□□□□□ -1.8
USP45-208	ENST00000500704	FAM193A	P78312	1265 aa		3.84	□□□□□ -1.8
USP45-208	ENST00000500704	FTSJ3	Q8IY81	847 aa	Known RBP	3.84	□□□□□ -1.8
USP45-208	ENST00000500704	FAM43A	Q8N2R8	423 aa		3.83	□□□□□ -1.8
USP45-208	ENST00000500704	MTERF4	Q7Z6M4	381 aa	Known RBP	3.83	□□□□□ -1.8
USP45-208	ENST00000500704	IPO4	Q8TEX9	1081 aa	Known RBP	3.83	□□□□□ -1.8
USP45-208	ENST00000500704	C1orf115	Q9H7X2	142 aa		3.83	□□□□□ -1.8
USP45-208	ENST00000500704	GSE1	Q14687	1217 aa		3.83	□□□□□ -1.8
USP45-208	ENST00000500704	PLCD3	Q8N3E9	789 aa		3.83	□□□□□ -1.8
USP45-208	ENST00000500704	GPBP1L1	Q9HC44	474 aa	Predicted RBP	3.83	□□□□□ -1.8

Retrieved 100 of 20,778 RNA–protein pairs in 13 ms