RNA–Protein interactions for RNA: ENST00000471702.2

NPHP3-ACAD11-201, Transcript of NPHP3-ACAD11 readthrough (NMD candidate), humanhuman

TSL 2 BASIC

Gene NPHP3-ACAD11, Length 7,784 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-ACAD11-201ENST00000471702 TONSLQ96HA7 1378 aa17.64■□□□□ 0.41
NPHP3-ACAD11-201ENST00000471702 CLSTN1O94985 981 aa17.64■□□□□ 0.41
NPHP3-ACAD11-201ENST00000471702 IRX6P78412 446 aaPredicted RBP17.64■□□□□ 0.41
NPHP3-ACAD11-201ENST00000471702 LMOD2Q6P5Q4 547 aa17.62■□□□□ 0.41
NPHP3-ACAD11-201ENST00000471702 PPM1GO15355 546 aaPredicted RBP17.61■□□□□ 0.41
NPHP3-ACAD11-201ENST00000471702 PPP1R15AO75807 674 aaPredicted RBP17.6■□□□□ 0.41
NPHP3-ACAD11-201ENST00000471702 ARID4BQ4LE39 1312 aaPredicted RBP17.59■□□□□ 0.41
NPHP3-ACAD11-201ENST00000471702 HIRIP3Q9BW71 556 aaPredicted RBP17.57■□□□□ 0.4
NPHP3-ACAD11-201ENST00000471702 NCLP19338 710 aaKnown RBP17.55■□□□□ 0.4
NPHP3-ACAD11-201ENST00000471702 TRIM44Q96DX7 344 aaPredicted RBP17.53■□□□□ 0.4
NPHP3-ACAD11-201ENST00000471702 ZRSR1Q15695 479 aaKnown RBP17.52■□□□□ 0.4
NPHP3-ACAD11-201ENST00000471702 KCNH8Q96L42 1107 aa17.49■□□□□ 0.39
NPHP3-ACAD11-201ENST00000471702 AMER1Q5JTC6 1135 aaPredicted RBP17.49■□□□□ 0.39
NPHP3-ACAD11-201ENST00000471702 LAS1LQ9Y4W2 734 aaKnown RBP17.49■□□□□ 0.39
NPHP3-ACAD11-201ENST00000471702 ACIN1Q9UKV3 1341 aaKnown RBP17.46■□□□□ 0.39
NPHP3-ACAD11-201ENST00000471702 MRS2Q9HD23 443 aa17.46■□□□□ 0.39
NPHP3-ACAD11-201ENST00000471702 DNTTIP2Q5QJE6 756 aaKnown RBP17.44■□□□□ 0.38
NPHP3-ACAD11-201ENST00000471702 TNNT2P45379 298 aaPredicted RBP17.44■□□□□ 0.38
NPHP3-ACAD11-201ENST00000471702 NAP1L2Q9ULW6 460 aaPredicted RBP17.44■□□□□ 0.38
NPHP3-ACAD11-201ENST00000471702 PLCB2Q00722 1185 aa17.43■□□□□ 0.38
NPHP3-ACAD11-201ENST00000471702 TSPY4P0CV99 314 aa17.43■□□□□ 0.38
NPHP3-ACAD11-201ENST00000471702 TSPY10P0CW01 314 aa17.43■□□□□ 0.38
NPHP3-ACAD11-201ENST00000471702 RGL3Q3MIN7 710 aa17.43■□□□□ 0.38
NPHP3-ACAD11-201ENST00000471702 PTMAP06454 111 aaKnown RBP17.42■□□□□ 0.38
NPHP3-ACAD11-201ENST00000471702 ISY1Q9ULR0 285 aaKnown RBP17.39■□□□□ 0.38
NPHP3-ACAD11-201ENST00000471702 NEUROD2Q15784 382 aa17.39■□□□□ 0.37
NPHP3-ACAD11-201ENST00000471702 GOLGA2Q08379 1002 aa17.38■□□□□ 0.37
NPHP3-ACAD11-201ENST00000471702 CSRNP3Q8WYN3 585 aa17.34■□□□□ 0.37
NPHP3-ACAD11-201ENST00000471702 FGD1P98174 961 aa17.34■□□□□ 0.37
NPHP3-ACAD11-201ENST00000471702 SOX12O15370 315 aa17.34■□□□□ 0.37
NPHP3-ACAD11-201ENST00000471702 CHMP7Q8WUX9 453 aaPredicted RBP17.33■□□□□ 0.36
NPHP3-ACAD11-201ENST00000471702 FTSJ3Q8IY81 847 aaKnown RBP17.32■□□□□ 0.36
NPHP3-ACAD11-201ENST00000471702 GOLGA6L22H0YM25 854 aa17.31■□□□□ 0.36
NPHP3-ACAD11-201ENST00000471702 BECN1Q14457 450 aa17.3■□□□□ 0.36
NPHP3-ACAD11-201ENST00000471702 OS9Q13438 667 aaPredicted RBP17.3■□□□□ 0.36
NPHP3-ACAD11-201ENST00000471702 RRP7BPQ9NSQ0 103 aa17.28■□□□□ 0.36
NPHP3-ACAD11-201ENST00000471702 CASC1Q6TDU7 716 aa17.28■□□□□ 0.36
NPHP3-ACAD11-201ENST00000471702 TRHP20396 242 aaPredicted RBP17.28■□□□□ 0.36
NPHP3-ACAD11-201ENST00000471702 KCNJ4P48050 445 aa17.27■□□□□ 0.35
NPHP3-ACAD11-201ENST00000471702 FBXO3Q9UK99 471 aa17.23■□□□□ 0.35
NPHP3-ACAD11-201ENST00000471702 FRAT1Q92837 279 aaPredicted RBP17.19■□□□□ 0.34
NPHP3-ACAD11-201ENST00000471702 CFAP53Q96M91 514 aa17.19■□□□□ 0.34
NPHP3-ACAD11-201ENST00000471702 MTUS2Q5JR59 1369 aa17.18■□□□□ 0.34
NPHP3-ACAD11-201ENST00000471702 POGKQ9P215 609 aa17.18■□□□□ 0.34
NPHP3-ACAD11-201ENST00000471702 RTN4Q9NQC3 1192 aaKnown RBP17.18■□□□□ 0.34
NPHP3-ACAD11-201ENST00000471702 MLECQ14165 292 aa17.17■□□□□ 0.34
NPHP3-ACAD11-201ENST00000471702 ANO8Q9HCE9 1232 aaPredicted RBP17.16■□□□□ 0.34
NPHP3-ACAD11-201ENST00000471702 KNSTRNQ9Y448 316 aa17.16■□□□□ 0.34
NPHP3-ACAD11-201ENST00000471702 PDE4CQ08493 712 aa17.16■□□□□ 0.34
NPHP3-ACAD11-201ENST00000471702 RGS3P49796 1198 aa17.15■□□□□ 0.34
NPHP3-ACAD11-201ENST00000471702 ZNF330Q9Y3S2 320 aaPredicted RBP17.15■□□□□ 0.34
NPHP3-ACAD11-201ENST00000471702 U2SURPO15042 1029 aaKnown RBP17.15■□□□□ 0.34
NPHP3-ACAD11-201ENST00000471702 NOC3LQ8WTT2 800 aaKnown RBP17.15■□□□□ 0.34
NPHP3-ACAD11-201ENST00000471702 MAPK8IP3Q9UPT6 1336 aa17.14■□□□□ 0.33
NPHP3-ACAD11-201ENST00000471702 ERICH6BQ5W0A0 696 aa17.14■□□□□ 0.33
NPHP3-ACAD11-201ENST00000471702 EIF4G2P78344 907 aaKnown RBP eCLIP17.13■□□□□ 0.33
NPHP3-ACAD11-201ENST00000471702 DDRGK1Q96HY6 314 aa17.13■□□□□ 0.33
NPHP3-ACAD11-201ENST00000471702 NAP1L5Q96NT1 182 aaPredicted RBP17.12■□□□□ 0.33
NPHP3-ACAD11-201ENST00000471702 ZBTB4Q9P1Z0 1013 aaPredicted RBP17.11■□□□□ 0.33
NPHP3-ACAD11-201ENST00000471702 HSP90AB1P08238 724 aaKnown RBP17.1■□□□□ 0.33
NPHP3-ACAD11-201ENST00000471702 SPRYD3Q8NCJ5 442 aa17.08■□□□□ 0.32
NPHP3-ACAD11-201ENST00000471702 SAFB2Q14151 953 aaKnown RBP eCLIP17.08■□□□□ 0.32
NPHP3-ACAD11-201ENST00000471702 GOLGA6L4A6NEF3 574 aa17.07■□□□□ 0.32
NPHP3-ACAD11-201ENST00000471702 KIAA2012Q0VF49 1180 aa17.07■□□□□ 0.32
NPHP3-ACAD11-201ENST00000471702 GOLGA6L6A8MZA4 724 aa17.06■□□□□ 0.32
NPHP3-ACAD11-201ENST00000471702 CC2D1BQ5T0F9 858 aaKnown RBP17.06■□□□□ 0.32
NPHP3-ACAD11-201ENST00000471702 APBB1O00213 710 aa17.05■□□□□ 0.32
NPHP3-ACAD11-201ENST00000471702 MIER1Q8N108 512 aa17.04■□□□□ 0.32
NPHP3-ACAD11-201ENST00000471702 GNL2Q13823 731 aaKnown RBP17.04■□□□□ 0.32
NPHP3-ACAD11-201ENST00000471702 ANP32EQ9BTT0 268 aa17.04■□□□□ 0.32
NPHP3-ACAD11-201ENST00000471702 DRC7Q8IY82 874 aa17.04■□□□□ 0.32
NPHP3-ACAD11-201ENST00000471702 CNKSR2Q8WXI2 1034 aa17.03■□□□□ 0.32
NPHP3-ACAD11-201ENST00000471702 CCDC9Q9Y3X0 531 aaKnown RBP17.03■□□□□ 0.32
NPHP3-ACAD11-201ENST00000471702 KAT6BQ8WYB5 2073 aa17.02■□□□□ 0.32
NPHP3-ACAD11-201ENST00000471702 SUPT16HQ9Y5B9 1047 aaKnown RBP17.02■□□□□ 0.32
NPHP3-ACAD11-201ENST00000471702 PAK3O75914 559 aaPredicted RBP17.02■□□□□ 0.31
NPHP3-ACAD11-201ENST00000471702 PLEKHD1A6NEE1 506 aa17.02■□□□□ 0.31
NPHP3-ACAD11-201ENST00000471702 PNNQ9H307 717 aaKnown RBP17.01■□□□□ 0.31
NPHP3-ACAD11-201ENST00000471702 NUDCQ9Y266 331 aa17.01■□□□□ 0.31
NPHP3-ACAD11-201ENST00000471702 CARD11Q9BXL7 1154 aa17■□□□□ 0.31
NPHP3-ACAD11-201ENST00000471702 L1TD1Q5T7N2 865 aaKnown RBP16.99■□□□□ 0.31
NPHP3-ACAD11-201ENST00000471702 SCRIBQ14160 1630 aa16.99■□□□□ 0.31
NPHP3-ACAD11-201ENST00000471702 NRDCO43847 1150 aa16.98■□□□□ 0.31
NPHP3-ACAD11-201ENST00000471702 A0A0U1RQG5 324 aaPredicted RBP16.98■□□□□ 0.31
NPHP3-ACAD11-201ENST00000471702 ARID3AQ99856 593 aa16.97■□□□□ 0.31
NPHP3-ACAD11-201ENST00000471702 SRPK2P78362 688 aaKnown RBP16.95■□□□□ 0.3
NPHP3-ACAD11-201ENST00000471702 TMX4Q9H1E5 349 aaPredicted RBP16.95■□□□□ 0.3
NPHP3-ACAD11-201ENST00000471702 CDCA8Q53HL2 280 aa16.94■□□□□ 0.3
NPHP3-ACAD11-201ENST00000471702 STK26Q9P289 416 aa16.93■□□□□ 0.3
NPHP3-ACAD11-201ENST00000471702 CHAF1AQ13111 956 aaPredicted RBP16.93■□□□□ 0.3
NPHP3-ACAD11-201ENST00000471702 WWC1Q8IX03 1113 aa16.92■□□□□ 0.3
NPHP3-ACAD11-201ENST00000471702 G3V3G9 751 aa16.92■□□□□ 0.3
NPHP3-ACAD11-201ENST00000471702 DCAF8Q5TAQ9 597 aa16.92■□□□□ 0.3
NPHP3-ACAD11-201ENST00000471702 CSB-PGBD3P0DP91 1061 aa16.92■□□□□ 0.3
NPHP3-ACAD11-201ENST00000471702 CHMP3Q9Y3E7 222 aa16.92■□□□□ 0.3
NPHP3-ACAD11-201ENST00000471702 CFDP1Q9UEE9 299 aaPredicted RBP16.91■□□□□ 0.3
NPHP3-ACAD11-201ENST00000471702 CREBRFQ8IUR6 639 aa16.9■□□□□ 0.3
NPHP3-ACAD11-201ENST00000471702 RTF1Q92541 710 aaKnown RBP16.89■□□□□ 0.29
NPHP3-ACAD11-201ENST00000471702 VPS53Q5VIR6 699 aa16.85■□□□□ 0.29
NPHP3-ACAD11-201ENST00000471702 B4GALNT3Q6L9W6 998 aa16.84■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms