RNA–Protein interactions for RNA: ENST00000395198.7

HERC4-204, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase 4, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HERC4, Length 4,445 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC4-204ENST00000395198 RGS22Q8NE09 1264 aa6.33□□□□□ -1.4
HERC4-204ENST00000395198 PKD2Q13563 968 aa6.33□□□□□ -1.4
HERC4-204ENST00000395198 DNAJC5Q9H3Z4 198 aa6.33□□□□□ -1.4
HERC4-204ENST00000395198 SCAF1Q9H7N4 1312 aaKnown RBP6.32□□□□□ -1.4
HERC4-204ENST00000395198 CCDC180Q9P1Z9 1646 aa6.31□□□□□ -1.4
HERC4-204ENST00000395198 ZBTB7CA1YPR0 619 aa6.3□□□□□ -1.4
HERC4-204ENST00000395198 ZNF592Q92610 1267 aa6.29□□□□□ -1.4
HERC4-204ENST00000395198 A0A0U1RQG5 324 aaPredicted RBP6.28□□□□□ -1.4
HERC4-204ENST00000395198 GTF3C5Q9Y5Q8 519 aaPredicted RBP6.28□□□□□ -1.4
HERC4-204ENST00000395198 MTMR7Q9Y216 660 aa6.27□□□□□ -1.41
HERC4-204ENST00000395198 TICAM2Q86XR7 235 aa6.27□□□□□ -1.41
HERC4-204ENST00000395198 BBXQ8WY36 941 aaPredicted RBP6.27□□□□□ -1.41
HERC4-204ENST00000395198 ZEB1P37275 1124 aaPredicted RBP6.27□□□□□ -1.41
HERC4-204ENST00000395198 CERS3Q8IU89 383 aa6.26□□□□□ -1.41
HERC4-204ENST00000395198 FOXD4L5Q5VV16 416 aaPredicted RBP6.26□□□□□ -1.41
HERC4-204ENST00000395198 FOXD4L4Q8WXT5 416 aaPredicted RBP6.26□□□□□ -1.41
HERC4-204ENST00000395198 CWC22Q9HCG8 908 aaKnown RBP6.25□□□□□ -1.41
HERC4-204ENST00000395198 FOXD4L1Q9NU39 408 aa6.25□□□□□ -1.41
HERC4-204ENST00000395198 ARID3CA6NKF2 412 aa6.25□□□□□ -1.41
HERC4-204ENST00000395198 ZMYND15Q9H091 742 aa6.24□□□□□ -1.41
HERC4-204ENST00000395198 FAM177A1Q8N128 213 aaPredicted RBP6.24□□□□□ -1.41
HERC4-204ENST00000395198 CENPBP07199 599 aaPredicted RBP6.24□□□□□ -1.41
HERC4-204ENST00000395198 PIAS4Q8N2W9 510 aaPredicted RBP6.23□□□□□ -1.41
HERC4-204ENST00000395198 KCTD17Q8N5Z5 321 aa6.23□□□□□ -1.41
HERC4-204ENST00000395198 RAD21O60216 631 aa6.23□□□□□ -1.41
HERC4-204ENST00000395198 NAP1L5Q96NT1 182 aaPredicted RBP6.23□□□□□ -1.41
HERC4-204ENST00000395198 PRDM16Q9HAZ2 1276 aa6.23□□□□□ -1.41
HERC4-204ENST00000395198 RBM25P49756 843 aaKnown RBP6.2□□□□□ -1.42
HERC4-204ENST00000395198 RBM10P98175 930 aaKnown RBP6.2□□□□□ -1.42
HERC4-204ENST00000395198 PRDM10Q9NQV6 1147 aa6.2□□□□□ -1.42
HERC4-204ENST00000395198 ZBTB4Q9P1Z0 1013 aaPredicted RBP6.2□□□□□ -1.42
HERC4-204ENST00000395198 PPP4R3CPQ6ZMV5 832 aa6.19□□□□□ -1.42
HERC4-204ENST00000395198 ZNF326Q5BKZ1 582 aaKnown RBP6.19□□□□□ -1.42
HERC4-204ENST00000395198 SALL2Q9Y467 1007 aaPredicted RBP6.17□□□□□ -1.42
HERC4-204ENST00000395198 CLSTN1O94985 981 aa6.16□□□□□ -1.42
HERC4-204ENST00000395198 ANP32EQ9BTT0 268 aa6.16□□□□□ -1.42
HERC4-204ENST00000395198 CNPY4Q8N129 248 aa6.15□□□□□ -1.43
HERC4-204ENST00000395198 CC2D2BQ6DHV5 1058 aa6.14□□□□□ -1.43
HERC4-204ENST00000395198 IFNLR1Q8IU57 520 aaPredicted RBP6.14□□□□□ -1.43
HERC4-204ENST00000395198 PSMD1Q99460 953 aa6.14□□□□□ -1.43
HERC4-204ENST00000395198 SPRYD3Q8NCJ5 442 aa6.12□□□□□ -1.43
HERC4-204ENST00000395198 USP35Q9P2H5 1018 aa6.12□□□□□ -1.43
HERC4-204ENST00000395198 CHRM1P11229 460 aaPredicted RBP6.12□□□□□ -1.43
HERC4-204ENST00000395198 TEX2Q8IWB9 1127 aa6.12□□□□□ -1.43
HERC4-204ENST00000395198 KCNG1Q9UIX4 513 aa6.11□□□□□ -1.43
HERC4-204ENST00000395198 APBB1O00213 710 aa6.11□□□□□ -1.43
HERC4-204ENST00000395198 KDM4AO75164 1064 aa6.1□□□□□ -1.43
HERC4-204ENST00000395198 ZNF526Q8TF50 670 aaPredicted RBP6.1□□□□□ -1.43
HERC4-204ENST00000395198 CADPSQ9ULU8 1353 aa6.09□□□□□ -1.43
HERC4-204ENST00000395198 CCDC27Q2M243 656 aa6.09□□□□□ -1.43
HERC4-204ENST00000395198 NCLP19338 710 aaKnown RBP6.09□□□□□ -1.43
HERC4-204ENST00000395198 PPM1GO15355 546 aaPredicted RBP6.09□□□□□ -1.44
HERC4-204ENST00000395198 NEUROD2Q15784 382 aa6.08□□□□□ -1.44
HERC4-204ENST00000395198 FAM43BQ6ZT52 329 aaPredicted RBP6.08□□□□□ -1.44
HERC4-204ENST00000395198 MFAP1P55081 439 aaKnown RBP6.07□□□□□ -1.44
HERC4-204ENST00000395198 SECISBP2LQ93073 1101 aaKnown RBP6.07□□□□□ -1.44
HERC4-204ENST00000395198 RNF216Q9NWF9 866 aaPredicted RBP6.06□□□□□ -1.44
HERC4-204ENST00000395198 NAP1L2Q9ULW6 460 aaPredicted RBP6.05□□□□□ -1.44
HERC4-204ENST00000395198 CCDC82Q8N4S0 544 aa6.05□□□□□ -1.44
HERC4-204ENST00000395198 AEBP1Q8IUX7 1158 aa6.04□□□□□ -1.44
HERC4-204ENST00000395198 ARID4BQ4LE39 1312 aaPredicted RBP6.04□□□□□ -1.44
HERC4-204ENST00000395198 DEKP35659 375 aaKnown RBP6.04□□□□□ -1.44
HERC4-204ENST00000395198 ZNF316A6NFI3 1004 aaPredicted RBP6.03□□□□□ -1.44
HERC4-204ENST00000395198 CLSPNQ9HAW4 1339 aa6.03□□□□□ -1.44
HERC4-204ENST00000395198 GRIPAP1Q4V328 841 aa6.03□□□□□ -1.44
HERC4-204ENST00000395198 CCDC125Q86Z20 511 aa6.03□□□□□ -1.44
HERC4-204ENST00000395198 PLCD4Q9BRC7 762 aa6.01□□□□□ -1.45
HERC4-204ENST00000395198 TMCO4Q5TGY1 634 aa6.01□□□□□ -1.45
HERC4-204ENST00000395198 TRAIPQ9BWF2 469 aa6.01□□□□□ -1.45
HERC4-204ENST00000395198 MAPK8IP2Q13387 824 aaPredicted RBP6.01□□□□□ -1.45
HERC4-204ENST00000395198 RGL2O15211 777 aa6□□□□□ -1.45
HERC4-204ENST00000395198 GZF1Q9H116 711 aaPredicted RBP6□□□□□ -1.45
HERC4-204ENST00000395198 WWC1Q8IX03 1113 aa6□□□□□ -1.45
HERC4-204ENST00000395198 E9PSI1 815 aa6□□□□□ -1.45
HERC4-204ENST00000395198 LMOD2Q6P5Q4 547 aa6□□□□□ -1.45
HERC4-204ENST00000395198 SGSM3Q96HU1 749 aa6□□□□□ -1.45
HERC4-204ENST00000395198 VASPP50552 380 aaPredicted RBP5.99□□□□□ -1.45
HERC4-204ENST00000395198 SLC24A3Q9HC58 644 aa5.99□□□□□ -1.45
HERC4-204ENST00000395198 MKRN3Q13064 507 aaKnown RBP5.98□□□□□ -1.45
HERC4-204ENST00000395198 LOC102724159A0A0B4J2E5 919 aa5.98□□□□□ -1.45
HERC4-204ENST00000395198 MAFGO15525 162 aa5.98□□□□□ -1.45
HERC4-204ENST00000395198 PWP2Q15269 919 aaKnown RBP5.98□□□□□ -1.45
HERC4-204ENST00000395198 ANAPC15P60006 121 aa5.97□□□□□ -1.45
HERC4-204ENST00000395198 BRD1O95696 1058 aa5.97□□□□□ -1.45
HERC4-204ENST00000395198 IRF5Q13568 498 aa5.97□□□□□ -1.45
HERC4-204ENST00000395198 ERICH6BQ5W0A0 696 aa5.96□□□□□ -1.45
HERC4-204ENST00000395198 IPO4Q8TEX9 1081 aaKnown RBP5.96□□□□□ -1.45
HERC4-204ENST00000395198 CHMP4BQ9H444 224 aaKnown RBP5.96□□□□□ -1.45
HERC4-204ENST00000395198 MYO15BQ96JP2 1530 aa5.96□□□□□ -1.46
HERC4-204ENST00000395198 IGSF5Q9NSI5 407 aa5.94□□□□□ -1.46
HERC4-204ENST00000395198 UNCXA6NJT0 531 aa5.94□□□□□ -1.46
HERC4-204ENST00000395198 SETQ01105 290 aaPredicted RBP5.94□□□□□ -1.46
HERC4-204ENST00000395198 RIPOR2Q9Y4F9 1068 aa5.94□□□□□ -1.46
HERC4-204ENST00000395198 SMARCA5O60264 1052 aaPredicted RBP5.93□□□□□ -1.46
HERC4-204ENST00000395198 TMTC2Q8N394 836 aa5.93□□□□□ -1.46
HERC4-204ENST00000395198 DNAJC2Q99543 621 aaKnown RBP5.93□□□□□ -1.46
HERC4-204ENST00000395198 ZC3H15Q8WU90 426 aaKnown RBP5.92□□□□□ -1.46
HERC4-204ENST00000395198 FAM50AQ14320 339 aaKnown RBP5.92□□□□□ -1.46
HERC4-204ENST00000395198 LAS1LQ9Y4W2 734 aaKnown RBP5.92□□□□□ -1.46
HERC4-204ENST00000395198 MCCP23508 829 aa5.91□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 7.6 ms