RNA–Protein interactions for RNA: ENST00000375820.8

COL4A1-201, Transcript of collagen type IV alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL4A1, Length 6,532 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-201ENST00000375820 MYH16Q9H6N6 1097 aa18.25■□□□□ 0.51
COL4A1-201ENST00000375820 NCLP19338 710 aaKnown RBP18.23■□□□□ 0.51
COL4A1-201ENST00000375820 MIER1Q8N108 512 aa18.21■□□□□ 0.5
COL4A1-201ENST00000375820 PPM1GO15355 546 aaPredicted RBP18.16■□□□□ 0.5
COL4A1-201ENST00000375820 RRP7BPQ9NSQ0 103 aa18.14■□□□□ 0.49
COL4A1-201ENST00000375820 RGL3Q3MIN7 710 aa18.12■□□□□ 0.49
COL4A1-201ENST00000375820 TRIM44Q96DX7 344 aaPredicted RBP18.12■□□□□ 0.49
COL4A1-201ENST00000375820 RTN4Q9NQC3 1192 aaKnown RBP18.11■□□□□ 0.49
COL4A1-201ENST00000375820 PPP1R15AO75807 674 aaPredicted RBP18.1■□□□□ 0.49
COL4A1-201ENST00000375820 LAS1LQ9Y4W2 734 aaKnown RBP18.1■□□□□ 0.49
COL4A1-201ENST00000375820 KCNH8Q96L42 1107 aa18.1■□□□□ 0.49
COL4A1-201ENST00000375820 NEUROD2Q15784 382 aa18.09■□□□□ 0.49
COL4A1-201ENST00000375820 TSPY4P0CV99 314 aa18.08■□□□□ 0.49
COL4A1-201ENST00000375820 TSPY10P0CW01 314 aa18.08■□□□□ 0.49
COL4A1-201ENST00000375820 HAP1P54257 671 aaPredicted RBP18.08■□□□□ 0.48
COL4A1-201ENST00000375820 PTMAP06454 111 aaKnown RBP18.06■□□□□ 0.48
COL4A1-201ENST00000375820 DNTTIP2Q5QJE6 756 aaKnown RBP18.04■□□□□ 0.48
COL4A1-201ENST00000375820 BECN1Q14457 450 aa18.04■□□□□ 0.48
COL4A1-201ENST00000375820 PLCB2Q00722 1185 aa18.02■□□□□ 0.48
COL4A1-201ENST00000375820 TNNT2P45379 298 aaPredicted RBP18.01■□□□□ 0.47
COL4A1-201ENST00000375820 MTUS2Q5JR59 1369 aa18■□□□□ 0.47
COL4A1-201ENST00000375820 NCBP3Q53F19 620 aaKnown RBP18■□□□□ 0.47
COL4A1-201ENST00000375820 LMOD2Q6P5Q4 547 aa18■□□□□ 0.47
COL4A1-201ENST00000375820 ZRSR1Q15695 479 aaKnown RBP17.99■□□□□ 0.47
COL4A1-201ENST00000375820 EIF4G2P78344 907 aaKnown RBP eCLIP17.99■□□□□ 0.47
COL4A1-201ENST00000375820 DDRGK1Q96HY6 314 aa17.98■□□□□ 0.47
COL4A1-201ENST00000375820 SUPT16HQ9Y5B9 1047 aaKnown RBP17.97■□□□□ 0.47
COL4A1-201ENST00000375820 GOLGA6L22H0YM25 854 aa17.97■□□□□ 0.47
COL4A1-201ENST00000375820 ARID4BQ4LE39 1312 aaPredicted RBP17.97■□□□□ 0.47
COL4A1-201ENST00000375820 SCRIBQ14160 1630 aa17.97■□□□□ 0.47
COL4A1-201ENST00000375820 FTSJ3Q8IY81 847 aaKnown RBP17.97■□□□□ 0.47
COL4A1-201ENST00000375820 RGS3P49796 1198 aa17.96■□□□□ 0.47
COL4A1-201ENST00000375820 CHMP7Q8WUX9 453 aaPredicted RBP17.95■□□□□ 0.46
COL4A1-201ENST00000375820 FRAT1Q92837 279 aaPredicted RBP17.93■□□□□ 0.46
COL4A1-201ENST00000375820 NAP1L2Q9ULW6 460 aaPredicted RBP17.93■□□□□ 0.46
COL4A1-201ENST00000375820 NAP1L5Q96NT1 182 aaPredicted RBP17.93■□□□□ 0.46
COL4A1-201ENST00000375820 NPHP1O15259 732 aa17.92■□□□□ 0.46
COL4A1-201ENST00000375820 CASC1Q6TDU7 716 aa17.89■□□□□ 0.46
COL4A1-201ENST00000375820 AMER1Q5JTC6 1135 aaPredicted RBP17.89■□□□□ 0.45
COL4A1-201ENST00000375820 SPRYD3Q8NCJ5 442 aa17.87■□□□□ 0.45
COL4A1-201ENST00000375820 CC2D1BQ5T0F9 858 aaKnown RBP17.87■□□□□ 0.45
COL4A1-201ENST00000375820 KNSTRNQ9Y448 316 aa17.87■□□□□ 0.45
COL4A1-201ENST00000375820 SOX12O15370 315 aa17.86■□□□□ 0.45
COL4A1-201ENST00000375820 CFAP53Q96M91 514 aa17.86■□□□□ 0.45
COL4A1-201ENST00000375820 OS9Q13438 667 aaPredicted RBP17.84■□□□□ 0.45
COL4A1-201ENST00000375820 FGD1P98174 961 aa17.81■□□□□ 0.44
COL4A1-201ENST00000375820 CARD11Q9BXL7 1154 aa17.81■□□□□ 0.44
COL4A1-201ENST00000375820 MAPK8IP3Q9UPT6 1336 aa17.81■□□□□ 0.44
COL4A1-201ENST00000375820 CLSTN1O94985 981 aa17.81■□□□□ 0.44
COL4A1-201ENST00000375820 HSP90AB1P08238 724 aaKnown RBP17.8■□□□□ 0.44
COL4A1-201ENST00000375820 U2SURPO15042 1029 aaKnown RBP17.8■□□□□ 0.44
COL4A1-201ENST00000375820 KCNJ4P48050 445 aa17.78■□□□□ 0.44
COL4A1-201ENST00000375820 B4GALNT3Q6L9W6 998 aa17.76■□□□□ 0.43
COL4A1-201ENST00000375820 POGKQ9P215 609 aa17.76■□□□□ 0.43
COL4A1-201ENST00000375820 DCAF1Q9Y4B6 1507 aa17.75■□□□□ 0.43
COL4A1-201ENST00000375820 ANP32EQ9BTT0 268 aa17.75■□□□□ 0.43
COL4A1-201ENST00000375820 SIN3AQ96ST3 1273 aa17.74■□□□□ 0.43
COL4A1-201ENST00000375820 CLIP1P30622 1438 aa17.73■□□□□ 0.43
COL4A1-201ENST00000375820 ISY1Q9ULR0 285 aaKnown RBP17.72■□□□□ 0.43
COL4A1-201ENST00000375820 GOLGA2Q08379 1002 aa17.72■□□□□ 0.43
COL4A1-201ENST00000375820 PLEKHD1A6NEE1 506 aa17.72■□□□□ 0.43
COL4A1-201ENST00000375820 ZCCHC6Q5VYS8 1495 aaKnown RBP17.71■□□□□ 0.43
COL4A1-201ENST00000375820 SAFB2Q14151 953 aaKnown RBP eCLIP17.71■□□□□ 0.43
COL4A1-201ENST00000375820 ARID3AQ99856 593 aa17.71■□□□□ 0.43
COL4A1-201ENST00000375820 APBB1O00213 710 aa17.71■□□□□ 0.42
COL4A1-201ENST00000375820 NOP58Q9Y2X3 529 aaKnown RBP17.69■□□□□ 0.42
COL4A1-201ENST00000375820 ERICH6BQ5W0A0 696 aa17.67■□□□□ 0.42
COL4A1-201ENST00000375820 CFDP1Q9UEE9 299 aaPredicted RBP17.67■□□□□ 0.42
COL4A1-201ENST00000375820 MLECQ14165 292 aa17.66■□□□□ 0.42
COL4A1-201ENST00000375820 NUDCQ9Y266 331 aa17.66■□□□□ 0.42
COL4A1-201ENST00000375820 DRC7Q8IY82 874 aa17.64■□□□□ 0.41
COL4A1-201ENST00000375820 GOLGA6L4A6NEF3 574 aa17.64■□□□□ 0.41
COL4A1-201ENST00000375820 GOLGA6L6A8MZA4 724 aa17.63■□□□□ 0.41
COL4A1-201ENST00000375820 CDCA8Q53HL2 280 aa17.63■□□□□ 0.41
COL4A1-201ENST00000375820 PPP4R2Q9NY27 417 aa17.62■□□□□ 0.41
COL4A1-201ENST00000375820 HSCBQ8IWL3 235 aa17.59■□□□□ 0.41
COL4A1-201ENST00000375820 ZNF330Q9Y3S2 320 aaPredicted RBP17.59■□□□□ 0.41
COL4A1-201ENST00000375820 SRPK2P78362 688 aaKnown RBP17.56■□□□□ 0.4
COL4A1-201ENST00000375820 PDE4CQ08493 712 aa17.56■□□□□ 0.4
COL4A1-201ENST00000375820 DCAF11Q8TEB1 546 aa17.55■□□□□ 0.4
COL4A1-201ENST00000375820 GZF1Q9H116 711 aaPredicted RBP17.55■□□□□ 0.4
COL4A1-201ENST00000375820 RSF1Q96T23 1441 aaPredicted RBP17.54■□□□□ 0.4
COL4A1-201ENST00000375820 STK26Q9P289 416 aa17.54■□□□□ 0.4
COL4A1-201ENST00000375820 MYO15BQ96JP2 1530 aa17.54■□□□□ 0.4
COL4A1-201ENST00000375820 MSNP26038 577 aaKnown RBP17.53■□□□□ 0.4
COL4A1-201ENST00000375820 GNL2Q13823 731 aaKnown RBP17.53■□□□□ 0.4
COL4A1-201ENST00000375820 CEP162Q5TB80 1403 aa17.53■□□□□ 0.4
COL4A1-201ENST00000375820 ANO8Q9HCE9 1232 aaPredicted RBP17.52■□□□□ 0.4
COL4A1-201ENST00000375820 CHAF1AQ13111 956 aaPredicted RBP17.51■□□□□ 0.39
COL4A1-201ENST00000375820 DEKP35659 375 aaKnown RBP17.5■□□□□ 0.39
COL4A1-201ENST00000375820 TRHP20396 242 aaPredicted RBP17.5■□□□□ 0.39
COL4A1-201ENST00000375820 NRDCO43847 1150 aa17.49■□□□□ 0.39
COL4A1-201ENST00000375820 PAK3O75914 559 aaPredicted RBP17.48■□□□□ 0.39
COL4A1-201ENST00000375820 MORC1Q86VD1 984 aa17.48■□□□□ 0.39
COL4A1-201ENST00000375820 FOXD1Q16676 465 aa17.47■□□□□ 0.39
COL4A1-201ENST00000375820 MCCP23508 829 aa17.46■□□□□ 0.39
COL4A1-201ENST00000375820 SLKQ9H2G2 1235 aaPredicted RBP17.46■□□□□ 0.39
COL4A1-201ENST00000375820 ZBTB4Q9P1Z0 1013 aaPredicted RBP17.46■□□□□ 0.39
COL4A1-201ENST00000375820 TMF1P82094 1093 aa17.45■□□□□ 0.38
COL4A1-201ENST00000375820 RTF1Q92541 710 aaKnown RBP17.45■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms