RNA–Protein interactions for RNA: ENST00000618207.4

CIITA-212, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 5 BASIC

Gene CIITA, Length 2,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-212ENST00000618207 TSHBP01222 138 aa9.05□□□□□ -0.96
CIITA-212ENST00000618207 RNASE1P07998 156 aaKnown RBP9.05□□□□□ -0.96
CIITA-212ENST00000618207 ATRQ13535 2644 aa9.05□□□□□ -0.96
CIITA-212ENST00000618207 JMJD8Q96S16 334 aa9.05□□□□□ -0.96
CIITA-212ENST00000618207 TRBV25-1A0A075B6N4 114 aa9.05□□□□□ -0.96
CIITA-212ENST00000618207 IGHV3-38A0A0C4DH36 116 aa9.04□□□□□ -0.96
CIITA-212ENST00000618207 C9orf118A6NHY6 69 aa9.04□□□□□ -0.96
CIITA-212ENST00000618207 RPL35AP18077 110 aaKnown RBP9.04□□□□□ -0.96
CIITA-212ENST00000618207 FHL3Q13643 280 aa9.04□□□□□ -0.96
CIITA-212ENST00000618207 Q6ZSN1 163 aa9.04□□□□□ -0.96
CIITA-212ENST00000618207 INSP01308 110 aa9.04□□□□□ -0.96
CIITA-212ENST00000618207 PLNP26678 52 aa9.04□□□□□ -0.96
CIITA-212ENST00000618207 TRPT1Q86TN4 253 aaKnown RBP9.04□□□□□ -0.96
CIITA-212ENST00000618207 NSD1Q96L73 2696 aaPredicted RBP9.04□□□□□ -0.96
CIITA-212ENST00000618207 HIVEP1P15822 2718 aa9.04□□□□□ -0.96
CIITA-212ENST00000618207 LY6G6DO95868 133 aa9.04□□□□□ -0.96
CIITA-212ENST00000618207 PHLDA1Q8WV24 401 aaPredicted RBP9.04□□□□□ -0.96
CIITA-212ENST00000618207 TRBV27A0A0K0K1C4 114 aa9.03□□□□□ -0.96
CIITA-212ENST00000618207 IGHV3-53P01767 116 aa9.03□□□□□ -0.96
CIITA-212ENST00000618207 ZNF415Q09FC8 603 aa9.03□□□□□ -0.96
CIITA-212ENST00000618207 RNASE13Q5GAN3 156 aaKnown RBP9.03□□□□□ -0.96
CIITA-212ENST00000618207 PTH2Q96A98 100 aa9.03□□□□□ -0.96
CIITA-212ENST00000618207 CHAC1Q9BUX1 264 aa9.03□□□□□ -0.96
CIITA-212ENST00000618207 TENM1Q9UKZ4 2725 aa9.03□□□□□ -0.96
CIITA-212ENST00000618207 M0R2P5 195 aa9.03□□□□□ -0.96
CIITA-212ENST00000618207 CEMP1Q6PRD7 247 aaPredicted RBP9.03□□□□□ -0.96
CIITA-212ENST00000618207 ANAPC13Q9BS18 74 aa9.03□□□□□ -0.96
CIITA-212ENST00000618207 TRAV12-1A0A0B4J245 112 aa9.02□□□□□ -0.97
CIITA-212ENST00000618207 C11orf86A6NJI1 115 aa9.02□□□□□ -0.97
CIITA-212ENST00000618207 HILS1P60008 231 aa9.02□□□□□ -0.97
CIITA-212ENST00000618207 SEC11AP67812 179 aa9.02□□□□□ -0.97
CIITA-212ENST00000618207 TMEM170BQ5T4T1 132 aa9.02□□□□□ -0.97
CIITA-212ENST00000618207 IGIPA6NJ69 53 aa9.02□□□□□ -0.97
CIITA-212ENST00000618207 FXYD2P54710 66 aa9.02□□□□□ -0.97
CIITA-212ENST00000618207 TRGV1A0A0A0MS02 117 aa9.01□□□□□ -0.97
CIITA-212ENST00000618207 TRAV2A0A0B4J234 112 aa9.01□□□□□ -0.97
CIITA-212ENST00000618207 H3BRM9 83 aa9.01□□□□□ -0.97
CIITA-212ENST00000618207 IGHV3-64A0A075B6Q5 118 aa9.01□□□□□ -0.97
CIITA-212ENST00000618207 INAFM1C9JVW0 142 aa9.01□□□□□ -0.97
CIITA-212ENST00000618207 C1orf158Q8N1D5 194 aa9.01□□□□□ -0.97
CIITA-212ENST00000618207 C11orf72Q8NBR9 251 aa9.01□□□□□ -0.97
CIITA-212ENST00000618207 TRBV6-5A0A0K0K1A5 114 aa9□□□□□ -0.97
CIITA-212ENST00000618207 A8MTW9 85 aa9□□□□□ -0.97
CIITA-212ENST00000618207 H3BUT2 72 aa9□□□□□ -0.97
CIITA-212ENST00000618207 I3L3M4 83 aa9□□□□□ -0.97
CIITA-212ENST00000618207 K7ERJ3 54 aa9□□□□□ -0.97
CIITA-212ENST00000618207 CFAP126Q5VTH2 177 aa9□□□□□ -0.97
CIITA-212ENST00000618207 PRADC1Q9BSG0 188 aa9□□□□□ -0.97
CIITA-212ENST00000618207 SPCS1Q9Y6A9 102 aa9□□□□□ -0.97
CIITA-212ENST00000618207 PMVKQ15126 192 aa9□□□□□ -0.97
CIITA-212ENST00000618207 C1QTNF4Q9BXJ3 329 aa9□□□□□ -0.97
CIITA-212ENST00000618207 PPDPFQ9H3Y8 114 aa9□□□□□ -0.97
CIITA-212ENST00000618207 SPINK8P0C7L1 97 aa8.99□□□□□ -0.97
CIITA-212ENST00000618207 IGLV4-69A0A075B6H9 119 aa8.99□□□□□ -0.97
CIITA-212ENST00000618207 A8MWV9 139 aa8.99□□□□□ -0.97
CIITA-212ENST00000618207 KRTAP10-3P60369 221 aa8.99□□□□□ -0.97
CIITA-212ENST00000618207 CSDC2Q9Y534 153 aaKnown RBP8.99□□□□□ -0.97
CIITA-212ENST00000618207 A6NDN8 102 aa8.99□□□□□ -0.97
CIITA-212ENST00000618207 C16orf95Q9H693 158 aa8.99□□□□□ -0.97
CIITA-212ENST00000618207 NHP2Q9NX24 153 aaKnown RBP8.99□□□□□ -0.97
CIITA-212ENST00000618207 ADARB2-AS1A8MUL3 147 aa8.98□□□□□ -0.97
CIITA-212ENST00000618207 SCGB1D4Q6XE38 83 aa8.98□□□□□ -0.97
CIITA-212ENST00000618207 ZNRF2Q8NHG8 242 aa8.98□□□□□ -0.97
CIITA-212ENST00000618207 HIST1H4GQ99525 98 aa8.98□□□□□ -0.97
CIITA-212ENST00000618207 IGKV2D-29A0A075B6S2 120 aaPredicted RBP8.98□□□□□ -0.97
CIITA-212ENST00000618207 IGKV2-29A2NJV5 120 aaPredicted RBP8.98□□□□□ -0.97
CIITA-212ENST00000618207 ZNF815PA8K554 130 aa8.98□□□□□ -0.97
CIITA-212ENST00000618207 PF4P02776 101 aa8.98□□□□□ -0.97
CIITA-212ENST00000618207 Q6ZTI0 123 aa8.98□□□□□ -0.97
CIITA-212ENST00000618207 C20orf203Q8NBC4 194 aa8.98□□□□□ -0.97
CIITA-212ENST00000618207 NOP10Q9NPE3 64 aaKnown RBP8.97□□□□□ -0.97
CIITA-212ENST00000618207 SPANXB1Q9NS25 103 aaPredicted RBP8.97□□□□□ -0.97
CIITA-212ENST00000618207 MYMXA0A1B0GTQ4 84 aa8.96□□□□□ -0.97
CIITA-212ENST00000618207 A0A1W2PPM0 123 aa8.96□□□□□ -0.97
CIITA-212ENST00000618207 PLEKHB2Q96CS7 222 aa8.96□□□□□ -0.97
CIITA-212ENST00000618207 TIMM17AQ99595 171 aa8.96□□□□□ -0.97
CIITA-212ENST00000618207 F8P00451 2351 aa8.96□□□□□ -0.97
CIITA-212ENST00000618207 A0A0J9YXV3 536 aa8.96□□□□□ -0.98
CIITA-212ENST00000618207 SPATA3Q8NHX4 192 aa8.96□□□□□ -0.98
CIITA-212ENST00000618207 TMEM141Q96I45 108 aa8.96□□□□□ -0.98
CIITA-212ENST00000618207 IGLV1-51P01701 117 aa8.95□□□□□ -0.98
CIITA-212ENST00000618207 TEP1Q99973 2627 aaKnown RBP8.95□□□□□ -0.98
CIITA-212ENST00000618207 E9PLD3 99 aa8.95□□□□□ -0.98
CIITA-212ENST00000618207 RHOHQ15669 191 aa8.95□□□□□ -0.98
CIITA-212ENST00000618207 IGLV4-3A0A075B6K6 122 aa8.95□□□□□ -0.98
CIITA-212ENST00000618207 FABP2P12104 132 aa8.95□□□□□ -0.98
CIITA-212ENST00000618207 CEND1Q8N111 149 aa8.95□□□□□ -0.98
CIITA-212ENST00000618207 GAGE12JA6NER3 117 aa8.94□□□□□ -0.98
CIITA-212ENST00000618207 GAGE7O76087 117 aa8.94□□□□□ -0.98
CIITA-212ENST00000618207 GIG44P09565 113 aaPredicted RBP8.94□□□□□ -0.98
CIITA-212ENST00000618207 GAGE12FP0CL80 117 aa8.94□□□□□ -0.98
CIITA-212ENST00000618207 GAGE12GP0CL81 117 aa8.94□□□□□ -0.98
CIITA-212ENST00000618207 GAGE12IP0CL82 117 aa8.94□□□□□ -0.98
CIITA-212ENST00000618207 TSPEAR-AS2P59090 65 aa8.94□□□□□ -0.98
CIITA-212ENST00000618207 GAGE4Q13068 117 aa8.94□□□□□ -0.98
CIITA-212ENST00000618207 HIGD1BQ9P298 99 aa8.94□□□□□ -0.98
CIITA-212ENST00000618207 SMIM13P0DJ93 91 aa8.94□□□□□ -0.98
CIITA-212ENST00000618207 SRSF9Q13242 221 aaKnown RBP eCLIP8.93□□□□□ -0.98
CIITA-212ENST00000618207 HERVK_113P61574 105 aa8.92□□□□□ -0.98
CIITA-212ENST00000618207 LINC00467Q9BRT7 94 aa8.92□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms