RNA–Protein interactions for RNA: ENST00000598907.5

SHKBP1-218, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 738 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-218ENST00000598907 TRBV6-5A0A0K0K1A5 114 aa9.43□□□□□ -0.9
SHKBP1-218ENST00000598907 D6R8Y8 96 aa9.43□□□□□ -0.9
SHKBP1-218ENST00000598907 SMKR1H3BMG3 65 aa9.43□□□□□ -0.9
SHKBP1-218ENST00000598907 PHOX2AO14813 284 aa9.43□□□□□ -0.9
SHKBP1-218ENST00000598907 PAX4O43316 350 aa9.43□□□□□ -0.9
SHKBP1-218ENST00000598907 LINC00694P0DN24 101 aa9.43□□□□□ -0.9
SHKBP1-218ENST00000598907 CKS2P33552 79 aa9.43□□□□□ -0.9
SHKBP1-218ENST00000598907 NEXN-AS1Q8NBZ9 246 aa9.43□□□□□ -0.9
SHKBP1-218ENST00000598907 DNAJC30Q96LL9 226 aa9.43□□□□□ -0.9
SHKBP1-218ENST00000598907 PRADC1Q9BSG0 188 aa9.43□□□□□ -0.9
SHKBP1-218ENST00000598907 NIT2Q9NQR4 276 aa9.43□□□□□ -0.9
SHKBP1-218ENST00000598907 A0A0J9YY99 117 aa9.42□□□□□ -0.9
SHKBP1-218ENST00000598907 LOC100131303A0A0U1RQF7 123 aa9.42□□□□□ -0.9
SHKBP1-218ENST00000598907 NCR2O95944 276 aa9.42□□□□□ -0.9
SHKBP1-218ENST00000598907 PLA2G1BP04054 148 aaKnown RBP9.42□□□□□ -0.9
SHKBP1-218ENST00000598907 RPS10P46783 165 aaKnown RBP9.42□□□□□ -0.9
SHKBP1-218ENST00000598907 FABP9Q0Z7S8 132 aa9.42□□□□□ -0.9
SHKBP1-218ENST00000598907 KIAA1644Q3SXP7 199 aa9.42□□□□□ -0.9
SHKBP1-218ENST00000598907 ORMDL3Q8N138 153 aa9.42□□□□□ -0.9
SHKBP1-218ENST00000598907 RPL39LQ96EH5 51 aaKnown RBP9.42□□□□□ -0.9
SHKBP1-218ENST00000598907 FAT3Q8TDW7 4589 aa9.42□□□□□ -0.9
SHKBP1-218ENST00000598907 PPP1R17O96001 155 aa9.41□□□□□ -0.9
SHKBP1-218ENST00000598907 GYPEP15421 78 aa9.41□□□□□ -0.9
SHKBP1-218ENST00000598907 DEFB104AQ8WTQ1 72 aa9.41□□□□□ -0.9
SHKBP1-218ENST00000598907 ALKBH7Q9BT30 221 aaPredicted RBP9.41□□□□□ -0.9
SHKBP1-218ENST00000598907 UPK3BQ9BT76 320 aa9.41□□□□□ -0.9
SHKBP1-218ENST00000598907 LAMTOR2Q9Y2Q5 125 aa9.41□□□□□ -0.9
SHKBP1-218ENST00000598907 TNFRSF18Q9Y5U5 241 aa9.41□□□□□ -0.9
SHKBP1-218ENST00000598907 TRBV7-3A0A075B6L6 115 aa9.4□□□□□ -0.9
SHKBP1-218ENST00000598907 A0A087WTM6 91 aa9.4□□□□□ -0.9
SHKBP1-218ENST00000598907 PRSS47A8MTI9 375 aa9.4□□□□□ -0.9
SHKBP1-218ENST00000598907 TNFRSF6BO95407 300 aa9.4□□□□□ -0.9
SHKBP1-218ENST00000598907 TRGC2P03986 189 aa9.4□□□□□ -0.9
SHKBP1-218ENST00000598907 ESRGQ1W209 222 aa9.4□□□□□ -0.9
SHKBP1-218ENST00000598907 OR10J3Q5JRS4 329 aa9.4□□□□□ -0.9
SHKBP1-218ENST00000598907 PRELID3AQ96N28 172 aa9.4□□□□□ -0.9
SHKBP1-218ENST00000598907 MRPS16Q9Y3D3 137 aaKnown RBP9.4□□□□□ -0.9
SHKBP1-218ENST00000598907 A0A096LPF7 62 aa9.39□□□□□ -0.91
SHKBP1-218ENST00000598907 NPYP01303 97 aa9.39□□□□□ -0.91
SHKBP1-218ENST00000598907 POLR2KP53803 58 aaKnown RBP9.39□□□□□ -0.91
SHKBP1-218ENST00000598907 UBE2D3P61077 147 aa9.39□□□□□ -0.91
SHKBP1-218ENST00000598907 UBE2D2P62837 147 aa9.39□□□□□ -0.91
SHKBP1-218ENST00000598907 RPL36AP83881 106 aaKnown RBP9.39□□□□□ -0.91
SHKBP1-218ENST00000598907 RPL36ALQ969Q0 106 aaKnown RBP9.39□□□□□ -0.91
SHKBP1-218ENST00000598907 C20orf78Q9BR46 151 aa9.39□□□□□ -0.91
SHKBP1-218ENST00000598907 GAGE12JA6NER3 117 aa9.38□□□□□ -0.91
SHKBP1-218ENST00000598907 RPL32P62910 135 aaKnown RBP9.38□□□□□ -0.91
SHKBP1-218ENST00000598907 GAGE1Q13065 139 aa9.38□□□□□ -0.91
SHKBP1-218ENST00000598907 GAGE4Q13068 117 aa9.38□□□□□ -0.91
SHKBP1-218ENST00000598907 GAGE5Q13069 117 aa9.38□□□□□ -0.91
SHKBP1-218ENST00000598907 MRPL23Q16540 153 aaKnown RBP9.38□□□□□ -0.91
SHKBP1-218ENST00000598907 GAGE13Q4V321 117 aa9.38□□□□□ -0.91
SHKBP1-218ENST00000598907 ICOSQ9Y6W8 199 aa9.38□□□□□ -0.91
SHKBP1-218ENST00000598907 SRIP30626 198 aa9.37□□□□□ -0.91
SHKBP1-218ENST00000598907 SUMO2P61956 95 aaKnown RBP9.37□□□□□ -0.91
SHKBP1-218ENST00000598907 LINC00528Q8N1L1 170 aa9.37□□□□□ -0.91
SHKBP1-218ENST00000598907 TMEM70Q9BUB7 260 aa9.37□□□□□ -0.91
SHKBP1-218ENST00000598907 ST20Q9HBF5 79 aa9.37□□□□□ -0.91
SHKBP1-218ENST00000598907 TRBV27A0A0K0K1C4 114 aa9.36□□□□□ -0.91
SHKBP1-218ENST00000598907 SDHAF1A6NFY7 115 aa9.36□□□□□ -0.91
SHKBP1-218ENST00000598907 SH2D6Q7Z4S9 175 aa9.36□□□□□ -0.91
SHKBP1-218ENST00000598907 DAZ4Q86SG3 579 aaKnown RBP9.36□□□□□ -0.91
SHKBP1-218ENST00000598907 DAZ3Q9NR90 486 aaKnown RBP9.36□□□□□ -0.91
SHKBP1-218ENST00000598907 IGLV5-52A0A0A0MRZ9 124 aa9.35□□□□□ -0.91
SHKBP1-218ENST00000598907 NEGR1Q7Z3B1 354 aa9.35□□□□□ -0.91
SHKBP1-218ENST00000598907 ATP6V0E2Q8NHE4 81 aa9.35□□□□□ -0.91
SHKBP1-218ENST00000598907 C18orf32Q8TCD1 76 aa9.35□□□□□ -0.91
SHKBP1-218ENST00000598907 DNAH8Q96JB1 4490 aa9.35□□□□□ -0.91
SHKBP1-218ENST00000598907 VCYO14598 125 aa9.34□□□□□ -0.91
SHKBP1-218ENST00000598907 TIRAPP58753 221 aa9.34□□□□□ -0.91
SHKBP1-218ENST00000598907 SREK1IP1Q8N9Q2 155 aaPredicted RBP9.34□□□□□ -0.91
SHKBP1-218ENST00000598907 SMIM2Q9BVW6 85 aa9.34□□□□□ -0.91
SHKBP1-218ENST00000598907 MAP1LC3AQ9H492 121 aa9.34□□□□□ -0.91
SHKBP1-218ENST00000598907 LRP2P98164 4655 aa9.34□□□□□ -0.91
SHKBP1-218ENST00000598907 I3L3M4 83 aa9.33□□□□□ -0.92
SHKBP1-218ENST00000598907 SIVA1O15304 175 aa9.33□□□□□ -0.92
SHKBP1-218ENST00000598907 LYPD5Q6UWN5 251 aa9.33□□□□□ -0.92
SHKBP1-218ENST00000598907 GTSF1LQ9H1H1 148 aa9.33□□□□□ -0.92
SHKBP1-218ENST00000598907 FAM30AQ9NZY2 134 aa9.33□□□□□ -0.92
SHKBP1-218ENST00000598907 IGHV3-38A0A0C4DH36 116 aa9.32□□□□□ -0.92
SHKBP1-218ENST00000598907 LINC01546A6NGU7 62 aa9.32□□□□□ -0.92
SHKBP1-218ENST00000598907 TSHBP01222 138 aa9.32□□□□□ -0.92
SHKBP1-218ENST00000598907 Q0VG73 95 aa9.32□□□□□ -0.92
SHKBP1-218ENST00000598907 NTM-AS1Q6ZSK4 140 aa9.32□□□□□ -0.92
SHKBP1-218ENST00000598907 Q8N8P6 123 aa9.32□□□□□ -0.92
SHKBP1-218ENST00000598907 LOC389332A0A1B0GUA5 103 aa9.31□□□□□ -0.92
SHKBP1-218ENST00000598907 HIST1H2BKO60814 126 aa9.31□□□□□ -0.92
SHKBP1-218ENST00000598907 OXTP01178 125 aa9.31□□□□□ -0.92
SHKBP1-218ENST00000598907 HIST1H2BJP06899 126 aa9.31□□□□□ -0.92
SHKBP1-218ENST00000598907 PMCHP20382 165 aa9.31□□□□□ -0.92
SHKBP1-218ENST00000598907 HIST1H2BOP23527 126 aa9.31□□□□□ -0.92
SHKBP1-218ENST00000598907 HIST1H2BBP33778 126 aa9.31□□□□□ -0.92
SHKBP1-218ENST00000598907 IFI27P40305 119 aaPredicted RBP9.31□□□□□ -0.92
SHKBP1-218ENST00000598907 HIST1H2BDP58876 126 aa9.31□□□□□ -0.92
SHKBP1-218ENST00000598907 HIST1H2BCP62807 126 aa9.31□□□□□ -0.92
SHKBP1-218ENST00000598907 HIST2H2BEQ16778 126 aa9.31□□□□□ -0.92
SHKBP1-218ENST00000598907 IQCJQ1A5X6 159 aa9.31□□□□□ -0.92
SHKBP1-218ENST00000598907 TMEM97Q5BJF2 176 aa9.31□□□□□ -0.92
SHKBP1-218ENST00000598907 HIST2H2BFQ5QNW6 126 aaPredicted RBP9.31□□□□□ -0.92
SHKBP1-218ENST00000598907 HIST1H2BHQ93079 126 aa9.31□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 56.5 ms