RNA–Protein interactions for RNA: ENST00000589604.5

VPS4B-204, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 1 (best)

Gene VPS4B, Length 1,672 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-204ENST00000589604 SLC25A29Q8N8R3 303 aa7.35□□□□□ -1.23
VPS4B-204ENST00000589604 H7C1H1 209 aa7.35□□□□□ -1.23
VPS4B-204ENST00000589604 AKR1D1P51857 326 aa7.35□□□□□ -1.23
VPS4B-204ENST00000589604 TIRAPP58753 221 aa7.35□□□□□ -1.23
VPS4B-204ENST00000589604 WWC2-AS2Q96NR7 200 aa7.35□□□□□ -1.23
VPS4B-204ENST00000589604 VCYO14598 125 aa7.34□□□□□ -1.23
VPS4B-204ENST00000589604 FCER1GP30273 86 aa7.34□□□□□ -1.23
VPS4B-204ENST00000589604 DYNC2H1Q8NCM8 4307 aaKnown RBP7.34□□□□□ -1.24
VPS4B-204ENST00000589604 K7EQD1 137 aa7.33□□□□□ -1.24
VPS4B-204ENST00000589604 TSHBP01222 138 aa7.33□□□□□ -1.24
VPS4B-204ENST00000589604 LAGE3Q14657 143 aa7.33□□□□□ -1.24
VPS4B-204ENST00000589604 PYY3Q5JQD4 70 aa7.33□□□□□ -1.24
VPS4B-204ENST00000589604 DEFB104AQ8WTQ1 72 aa7.33□□□□□ -1.24
VPS4B-204ENST00000589604 DNAJC30Q96LL9 226 aa7.33□□□□□ -1.24
VPS4B-204ENST00000589604 TRBV10-1A0A0K0K1A3 114 aa7.32□□□□□ -1.24
VPS4B-204ENST00000589604 TRBV6-4A0A1B0GX49 114 aa7.32□□□□□ -1.24
VPS4B-204ENST00000589604 K7EMI3 77 aa7.32□□□□□ -1.24
VPS4B-204ENST00000589604 SPART-AS1P0CW21 52 aa7.32□□□□□ -1.24
VPS4B-204ENST00000589604 C12orf74Q32Q52 190 aa7.32□□□□□ -1.24
VPS4B-204ENST00000589604 Q8N976 141 aa7.32□□□□□ -1.24
VPS4B-204ENST00000589604 TRGV4A0A0C4DH28 118 aa7.32□□□□□ -1.24
VPS4B-204ENST00000589604 LOC100131303A0A0U1RQF7 123 aa7.32□□□□□ -1.24
VPS4B-204ENST00000589604 HBDP02042 147 aa7.32□□□□□ -1.24
VPS4B-204ENST00000589604 C3orf79P0CE67 100 aa7.32□□□□□ -1.24
VPS4B-204ENST00000589604 Q6ZTC4 211 aa7.32□□□□□ -1.24
VPS4B-204ENST00000589604 C11orf45Q8TAV5 145 aa7.32□□□□□ -1.24
VPS4B-204ENST00000589604 MUC7Q8TAX7 377 aa7.32□□□□□ -1.24
VPS4B-204ENST00000589604 TNFRSF18Q9Y5U5 241 aa7.32□□□□□ -1.24
VPS4B-204ENST00000589604 TRBV7-3A0A075B6L6 115 aa7.31□□□□□ -1.24
VPS4B-204ENST00000589604 I3L3M4 83 aa7.31□□□□□ -1.24
VPS4B-204ENST00000589604 LEPROTL1O95214 131 aa7.31□□□□□ -1.24
VPS4B-204ENST00000589604 LINC00694P0DN24 101 aa7.31□□□□□ -1.24
VPS4B-204ENST00000589604 DAD1P61803 113 aa7.31□□□□□ -1.24
VPS4B-204ENST00000589604 JOSD1Q15040 202 aaPredicted RBP7.31□□□□□ -1.24
VPS4B-204ENST00000589604 ZFAND6Q6FIF0 208 aa7.31□□□□□ -1.24
VPS4B-204ENST00000589604 SPATA12Q7Z6I5 190 aa7.31□□□□□ -1.24
VPS4B-204ENST00000589604 ZNRF2Q8NHG8 242 aa7.31□□□□□ -1.24
VPS4B-204ENST00000589604 CRYBA4P53673 196 aa7.3□□□□□ -1.24
VPS4B-204ENST00000589604 UBE2D3P61077 147 aa7.3□□□□□ -1.24
VPS4B-204ENST00000589604 UBE2D2P62837 147 aa7.3□□□□□ -1.24
VPS4B-204ENST00000589604 ORMDL2Q53FV1 153 aa7.3□□□□□ -1.24
VPS4B-204ENST00000589604 HHLA3Q9XRX5 114 aa7.3□□□□□ -1.24
VPS4B-204ENST00000589604 PLECQ15149 4684 aaKnown RBP7.29□□□□□ -1.24
VPS4B-204ENST00000589604 LINC00518Q8N0U6 118 aa7.29□□□□□ -1.24
VPS4B-204ENST00000589604 TOMM6Q96B49 74 aa7.29□□□□□ -1.24
VPS4B-204ENST00000589604 VSIG2Q96IQ7 327 aa7.29□□□□□ -1.24
VPS4B-204ENST00000589604 LYSTQ99698 3801 aa7.29□□□□□ -1.24
VPS4B-204ENST00000589604 KIR2DL4Q99706 377 aa7.29□□□□□ -1.24
VPS4B-204ENST00000589604 IGHV3-38A0A0C4DH36 116 aa7.28□□□□□ -1.24
VPS4B-204ENST00000589604 GAGE12JA6NER3 117 aa7.28□□□□□ -1.24
VPS4B-204ENST00000589604 NUDT3O95989 172 aa7.28□□□□□ -1.24
VPS4B-204ENST00000589604 KRTDAPP60985 99 aa7.28□□□□□ -1.24
VPS4B-204ENST00000589604 RPL36AP83881 106 aaKnown RBP7.28□□□□□ -1.24
VPS4B-204ENST00000589604 GAGE1Q13065 139 aa7.28□□□□□ -1.24
VPS4B-204ENST00000589604 GAGE4Q13068 117 aa7.28□□□□□ -1.24
VPS4B-204ENST00000589604 GAGE5Q13069 117 aa7.28□□□□□ -1.24
VPS4B-204ENST00000589604 RHOHQ15669 191 aa7.28□□□□□ -1.24
VPS4B-204ENST00000589604 GAGE13Q4V321 117 aa7.28□□□□□ -1.24
VPS4B-204ENST00000589604 PHLDA1Q8WV24 401 aaPredicted RBP7.28□□□□□ -1.24
VPS4B-204ENST00000589604 RPL36ALQ969Q0 106 aaKnown RBP7.28□□□□□ -1.24
VPS4B-204ENST00000589604 CHCHD7Q9BUK0 85 aa7.28□□□□□ -1.24
VPS4B-204ENST00000589604 PRO0255Q9UI72 69 aa7.28□□□□□ -1.24
VPS4B-204ENST00000589604 TEX48A0A1B0GUV7 120 aa7.28□□□□□ -1.24
VPS4B-204ENST00000589604 ATP5G1P05496 136 aa7.28□□□□□ -1.24
VPS4B-204ENST00000589604 RPL39P62891 51 aaKnown RBP7.28□□□□□ -1.24
VPS4B-204ENST00000589604 C2orf66Q6UXQ4 117 aa7.28□□□□□ -1.24
VPS4B-204ENST00000589604 NTM-AS1Q6ZSK4 140 aa7.28□□□□□ -1.24
VPS4B-204ENST00000589604 HSPB8Q9UJY1 196 aa7.28□□□□□ -1.24
VPS4B-204ENST00000589604 KMT2CQ8NEZ4 4911 aaKnown RBP7.27□□□□□ -1.25
VPS4B-204ENST00000589604 SYS1-DBNDD2H3BUS1 97 aa7.27□□□□□ -1.25
VPS4B-204ENST00000589604 SMIM6P0DI80 62 aa7.27□□□□□ -1.25
VPS4B-204ENST00000589604 CASC10Q5T4H9 136 aa7.27□□□□□ -1.25
VPS4B-204ENST00000589604 C20orf203Q8NBC4 194 aa7.27□□□□□ -1.25
VPS4B-204ENST00000589604 IFI27L1Q96BM0 104 aa7.27□□□□□ -1.25
VPS4B-204ENST00000589604 PRADC1Q9BSG0 188 aa7.27□□□□□ -1.25
VPS4B-204ENST00000589604 IGIPA6NJ69 53 aa7.26□□□□□ -1.25
VPS4B-204ENST00000589604 DAZ4Q86SG3 579 aaKnown RBP7.26□□□□□ -1.25
VPS4B-204ENST00000589604 FAM104AQ969W3 186 aa7.26□□□□□ -1.25
VPS4B-204ENST00000589604 DAZ3Q9NR90 486 aaKnown RBP7.26□□□□□ -1.25
VPS4B-204ENST00000589604 PAX4O43316 350 aa7.25□□□□□ -1.25
VPS4B-204ENST00000589604 CYSLTR1Q9Y271 337 aa7.25□□□□□ -1.25
VPS4B-204ENST00000589604 DEFB131BA0A096LNP1 70 aa7.25□□□□□ -1.25
VPS4B-204ENST00000589604 A0A0J9YY99 117 aa7.25□□□□□ -1.25
VPS4B-204ENST00000589604 F5H768 121 aa7.25□□□□□ -1.25
VPS4B-204ENST00000589604 C3orf84H3BNL1 204 aa7.25□□□□□ -1.25
VPS4B-204ENST00000589604 HTN3P15516 51 aa7.25□□□□□ -1.25
VPS4B-204ENST00000589604 COTL1Q14019 142 aa7.25□□□□□ -1.25
VPS4B-204ENST00000589604 CEMP1Q6PRD7 247 aaPredicted RBP7.25□□□□□ -1.25
VPS4B-204ENST00000589604 ERASQ7Z444 233 aa7.25□□□□□ -1.25
VPS4B-204ENST00000589604 SCGB3A1Q96QR1 104 aa7.25□□□□□ -1.25
VPS4B-204ENST00000589604 C12orf57Q99622 126 aa7.25□□□□□ -1.25
VPS4B-204ENST00000589604 MAP1LC3CQ9BXW4 147 aa7.25□□□□□ -1.25
VPS4B-204ENST00000589604 TRAV26-1A0A087WT03 109 aa7.24□□□□□ -1.25
VPS4B-204ENST00000589604 TRAV10A0A0B4J240 114 aa7.24□□□□□ -1.25
VPS4B-204ENST00000589604 B5MCH6 92 aa7.24□□□□□ -1.25
VPS4B-204ENST00000589604 ATP5LO75964 103 aa7.24□□□□□ -1.25
VPS4B-204ENST00000589604 LINC01545Q5VT33 79 aa7.24□□□□□ -1.25
VPS4B-204ENST00000589604 GTSF1LQ9H1H1 148 aa7.24□□□□□ -1.25
VPS4B-204ENST00000589604 LINC01549A6NIU2 74 aa7.23□□□□□ -1.25
VPS4B-204ENST00000589604 G0S2P27469 103 aa7.23□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms