RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 KIR2DL4Q99706 377 aa17.44■□□□□ 0.38
SHMT1-207ENST00000580002 DNAH7Q8WXX0 4024 aa17.43■□□□□ 0.38
SHMT1-207ENST00000580002 TRAV10A0A0B4J240 114 aa17.43■□□□□ 0.38
SHMT1-207ENST00000580002 AMTP48728 403 aa17.43■□□□□ 0.38
SHMT1-207ENST00000580002 LINC00173Q6ZV60 143 aa17.43■□□□□ 0.38
SHMT1-207ENST00000580002 FCER1GP30273 86 aa17.43■□□□□ 0.38
SHMT1-207ENST00000580002 HIST1H2BLQ99880 126 aa17.43■□□□□ 0.38
SHMT1-207ENST00000580002 FABP4P15090 132 aa17.42■□□□□ 0.38
SHMT1-207ENST00000580002 ATP6V0E2Q8NHE4 81 aa17.42■□□□□ 0.38
SHMT1-207ENST00000580002 NUDT3O95989 172 aa17.41■□□□□ 0.38
SHMT1-207ENST00000580002 RPL39P62891 51 aaKnown RBP17.41■□□□□ 0.38
SHMT1-207ENST00000580002 DAZ4Q86SG3 579 aaKnown RBP17.41■□□□□ 0.38
SHMT1-207ENST00000580002 DAZ3Q9NR90 486 aaKnown RBP17.41■□□□□ 0.38
SHMT1-207ENST00000580002 BTF3P20290 206 aaKnown RBP17.4■□□□□ 0.38
SHMT1-207ENST00000580002 COTL1Q14019 142 aa17.4■□□□□ 0.38
SHMT1-207ENST00000580002 CHCHD7Q9BUK0 85 aa17.4■□□□□ 0.38
SHMT1-207ENST00000580002 CSMD3Q7Z407 3707 aa17.4■□□□□ 0.38
SHMT1-207ENST00000580002 DYNC2H1Q8NCM8 4307 aaKnown RBP17.4■□□□□ 0.38
SHMT1-207ENST00000580002 ICOSQ9Y6W8 199 aa17.39■□□□□ 0.37
SHMT1-207ENST00000580002 S100A2P29034 98 aa17.38■□□□□ 0.37
SHMT1-207ENST00000580002 IGKV2D-29A0A075B6S2 120 aaPredicted RBP17.38■□□□□ 0.37
SHMT1-207ENST00000580002 IGKV2-29A2NJV5 120 aaPredicted RBP17.38■□□□□ 0.37
SHMT1-207ENST00000580002 MRPL23Q16540 153 aaKnown RBP17.38■□□□□ 0.37
SHMT1-207ENST00000580002 ORMDL2Q53FV1 153 aa17.38■□□□□ 0.37
SHMT1-207ENST00000580002 HBDP02042 147 aa17.36■□□□□ 0.37
SHMT1-207ENST00000580002 C2orf66Q6UXQ4 117 aa17.36■□□□□ 0.37
SHMT1-207ENST00000580002 IGLL5B9A064 214 aa17.35■□□□□ 0.37
SHMT1-207ENST00000580002 C20orf203Q8NBC4 194 aa17.35■□□□□ 0.37
SHMT1-207ENST00000580002 H3BNG1 76 aa17.34■□□□□ 0.37
SHMT1-207ENST00000580002 K7EMI3 77 aa17.34■□□□□ 0.37
SHMT1-207ENST00000580002 TMEM18Q96B42 140 aa17.34■□□□□ 0.37
SHMT1-207ENST00000580002 CEMP1Q6PRD7 247 aaPredicted RBP17.33■□□□□ 0.37
SHMT1-207ENST00000580002 GTSF1LQ9H1H1 148 aa17.33■□□□□ 0.37
SHMT1-207ENST00000580002 TRBV6-8A0A0A6YYG3 113 aa17.33■□□□□ 0.36
SHMT1-207ENST00000580002 TOMM6Q96B49 74 aa17.33■□□□□ 0.36
SHMT1-207ENST00000580002 PLECQ15149 4684 aaKnown RBP17.32■□□□□ 0.36
SHMT1-207ENST00000580002 STARD9Q9P2P6 4700 aa17.32■□□□□ 0.36
SHMT1-207ENST00000580002 LEPROTL1O95214 131 aa17.32■□□□□ 0.36
SHMT1-207ENST00000580002 OR10D4PQ8NGN7 298 aa17.32■□□□□ 0.36
SHMT1-207ENST00000580002 OPRPNQ99935 248 aaPredicted RBP17.32■□□□□ 0.36
SHMT1-207ENST00000580002 LYPD5Q6UWN5 251 aa17.31■□□□□ 0.36
SHMT1-207ENST00000580002 PACRGQ96M98 296 aaPredicted RBP17.3■□□□□ 0.36
SHMT1-207ENST00000580002 CYSLTR1Q9Y271 337 aa17.3■□□□□ 0.36
SHMT1-207ENST00000580002 ESRGQ1W209 222 aa17.29■□□□□ 0.36
SHMT1-207ENST00000580002 ZC2HC1BQ5TFG8 222 aa17.28■□□□□ 0.36
SHMT1-207ENST00000580002 FAM104AQ969W3 186 aa17.28■□□□□ 0.36
SHMT1-207ENST00000580002 GAGE6Q13070 117 aa17.28■□□□□ 0.36
SHMT1-207ENST00000580002 SCGB3A1Q96QR1 104 aa17.28■□□□□ 0.36
SHMT1-207ENST00000580002 TMEM243Q9BU79 118 aa17.28■□□□□ 0.36
SHMT1-207ENST00000580002 TRBV25-1A0A075B6N4 114 aa17.27■□□□□ 0.35
SHMT1-207ENST00000580002 SPATA12Q7Z6I5 190 aa17.27■□□□□ 0.35
SHMT1-207ENST00000580002 IGIPA6NJ69 53 aa17.26■□□□□ 0.35
SHMT1-207ENST00000580002 Q8N3U1 123 aa17.26■□□□□ 0.35
SHMT1-207ENST00000580002 C3orf79P0CE67 100 aa17.25■□□□□ 0.35
SHMT1-207ENST00000580002 CHCHD5Q9BSY4 110 aa17.25■□□□□ 0.35
SHMT1-207ENST00000580002 UBE2D4Q9Y2X8 147 aa17.25■□□□□ 0.35
SHMT1-207ENST00000580002 H0Y8G0 127 aa17.25■□□□□ 0.35
SHMT1-207ENST00000580002 ZFAND6Q6FIF0 208 aa17.25■□□□□ 0.35
SHMT1-207ENST00000580002 AKR1D1P51857 326 aa17.24■□□□□ 0.35
SHMT1-207ENST00000580002 KRTDAPP60985 99 aa17.24■□□□□ 0.35
SHMT1-207ENST00000580002 RNASE13Q5GAN3 156 aaKnown RBP17.24■□□□□ 0.35
SHMT1-207ENST00000580002 IFI27L1Q96BM0 104 aa17.24■□□□□ 0.35
SHMT1-207ENST00000580002 SH2D6Q7Z4S9 175 aa17.23■□□□□ 0.35
SHMT1-207ENST00000580002 LYSTQ99698 3801 aa17.23■□□□□ 0.35
SHMT1-207ENST00000580002 FGF6P10767 208 aa17.23■□□□□ 0.35
SHMT1-207ENST00000580002 ERASQ7Z444 233 aa17.23■□□□□ 0.35
SHMT1-207ENST00000580002 C15orf53Q8NAA6 179 aa17.22■□□□□ 0.35
SHMT1-207ENST00000580002 HSPB8Q9UJY1 196 aa17.22■□□□□ 0.35
SHMT1-207ENST00000580002 TMEM97Q5BJF2 176 aa17.21■□□□□ 0.35
SHMT1-207ENST00000580002 LELP1Q5T871 98 aa17.21■□□□□ 0.35
SHMT1-207ENST00000580002 APLNQ9ULZ1 77 aa17.21■□□□□ 0.35
SHMT1-207ENST00000580002 TENM2Q9NT68 2774 aa17.2■□□□□ 0.34
SHMT1-207ENST00000580002 UBE2L6O14933 153 aa17.2■□□□□ 0.34
SHMT1-207ENST00000580002 Q8N976 141 aa17.2■□□□□ 0.34
SHMT1-207ENST00000580002 IGLV4-60A0A075B6I1 120 aa17.19■□□□□ 0.34
SHMT1-207ENST00000580002 IGLV4-3A0A075B6K6 122 aa17.19■□□□□ 0.34
SHMT1-207ENST00000580002 TMEM262E9PQX1 116 aa17.19■□□□□ 0.34
SHMT1-207ENST00000580002 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP17.19■□□□□ 0.34
SHMT1-207ENST00000580002 PMCHL2Q9BQD1 86 aa17.19■□□□□ 0.34
SHMT1-207ENST00000580002 G0S2P27469 103 aa17.18■□□□□ 0.34
SHMT1-207ENST00000580002 Q6ZUT4 128 aa17.18■□□□□ 0.34
SHMT1-207ENST00000580002 WFDC10BQ8IUB3 73 aa17.18■□□□□ 0.34
SHMT1-207ENST00000580002 BAALCQ8WXS3 180 aa17.18■□□□□ 0.34
SHMT1-207ENST00000580002 SYS1-DBNDD2H3BUS1 97 aa17.17■□□□□ 0.34
SHMT1-207ENST00000580002 ATP5LO75964 103 aa17.17■□□□□ 0.34
SHMT1-207ENST00000580002 MPV17L2Q567V2 206 aa17.17■□□□□ 0.34
SHMT1-207ENST00000580002 TIMM17AQ99595 171 aa17.17■□□□□ 0.34
SHMT1-207ENST00000580002 LINC00588Q9Y4M8 146 aa17.17■□□□□ 0.34
SHMT1-207ENST00000580002 MAP1LC3CQ9BXW4 147 aa17.17■□□□□ 0.34
SHMT1-207ENST00000580002 PYGO1Q9Y3Y4 419 aa17.17■□□□□ 0.34
SHMT1-207ENST00000580002 PRSS1P07477 247 aa17.16■□□□□ 0.34
SHMT1-207ENST00000580002 TIRAPP58753 221 aa17.16■□□□□ 0.34
SHMT1-207ENST00000580002 NUPR2A6NF83 97 aa17.15■□□□□ 0.34
SHMT1-207ENST00000580002 AMMECR1LQ6DCA0 310 aa17.15■□□□□ 0.34
SHMT1-207ENST00000580002 MRPL52Q86TS9 123 aaKnown RBP17.15■□□□□ 0.34
SHMT1-207ENST00000580002 SPANXA1Q9NS26 97 aa17.15■□□□□ 0.34
SHMT1-207ENST00000580002 TMEM141Q96I45 108 aa17.15■□□□□ 0.34
SHMT1-207ENST00000580002 PRSS29PA6NIE9 313 aa17.14■□□□□ 0.33
SHMT1-207ENST00000580002 RBX1P62877 108 aa17.14■□□□□ 0.33
SHMT1-207ENST00000580002 Q6ZN92 141 aa17.14■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms