RNA–Protein interactions for RNA: ENST00000563692.1

VPS39-207, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 4

Gene VPS39, Length 587 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-207ENST00000563692 ZNF479Q96JC4 524 aa6.37□□□□□ -1.39
VPS39-207ENST00000563692 PRO1933Q9H354 126 aa6.37□□□□□ -1.39
VPS39-207ENST00000563692 X6R8D5 127 aa6.37□□□□□ -1.39
VPS39-207ENST00000563692 TRBV7-3A0A075B6L6 115 aa6.36□□□□□ -1.39
VPS39-207ENST00000563692 TRAV12-1A0A0B4J245 112 aa6.36□□□□□ -1.39
VPS39-207ENST00000563692 TRBV6-4A0A1B0GX49 114 aa6.36□□□□□ -1.39
VPS39-207ENST00000563692 K7EQD1 137 aa6.36□□□□□ -1.39
VPS39-207ENST00000563692 DEFB135Q30KP9 77 aa6.36□□□□□ -1.39
VPS39-207ENST00000563692 ATOH7Q8N100 152 aa6.36□□□□□ -1.39
VPS39-207ENST00000563692 NEXN-AS1Q8NBZ9 246 aa6.36□□□□□ -1.39
VPS39-207ENST00000563692 ZNRF2Q8NHG8 242 aa6.36□□□□□ -1.39
VPS39-207ENST00000563692 PRADC1Q9BSG0 188 aa6.36□□□□□ -1.39
VPS39-207ENST00000563692 RETNQ9HD89 108 aa6.36□□□□□ -1.39
VPS39-207ENST00000563692 TP53TG1Q9Y2A0 90 aa6.36□□□□□ -1.39
VPS39-207ENST00000563692 A0A087WX48 190 aa6.35□□□□□ -1.39
VPS39-207ENST00000563692 TSHBP01222 138 aa6.35□□□□□ -1.39
VPS39-207ENST00000563692 P0DMU3 169 aa6.35□□□□□ -1.39
VPS39-207ENST00000563692 FAM231AP0DMU4 169 aa6.35□□□□□ -1.39
VPS39-207ENST00000563692 FAM231CP0DMU5 169 aa6.35□□□□□ -1.39
VPS39-207ENST00000563692 DEFB130BP0DP73 79 aa6.35□□□□□ -1.39
VPS39-207ENST00000563692 DEFB130AP0DP74 79 aa6.35□□□□□ -1.39
VPS39-207ENST00000563692 DDTP30046 118 aa6.35□□□□□ -1.39
VPS39-207ENST00000563692 SMAGPQ0VAQ4 97 aa6.35□□□□□ -1.39
VPS39-207ENST00000563692 COTL1Q14019 142 aa6.35□□□□□ -1.39
VPS39-207ENST00000563692 PAPPA-AS1Q5QFB9 102 aa6.35□□□□□ -1.39
VPS39-207ENST00000563692 DAZ4Q86SG3 579 aaKnown RBP6.35□□□□□ -1.39
VPS39-207ENST00000563692 C20orf203Q8NBC4 194 aa6.35□□□□□ -1.39
VPS39-207ENST00000563692 TIMM17AQ99595 171 aa6.35□□□□□ -1.39
VPS39-207ENST00000563692 DAZ3Q9NR90 486 aaKnown RBP6.35□□□□□ -1.39
VPS39-207ENST00000563692 NBEAL2Q6ZNJ1 2754 aa6.35□□□□□ -1.39
VPS39-207ENST00000563692 DPM2O94777 84 aa6.34□□□□□ -1.39
VPS39-207ENST00000563692 IGKCP01834 107 aa6.34□□□□□ -1.39
VPS39-207ENST00000563692 LINC00612Q8N6U2 182 aa6.34□□□□□ -1.39
VPS39-207ENST00000563692 SLC25A29Q8N8R3 303 aa6.34□□□□□ -1.39
VPS39-207ENST00000563692 PMCHL2Q9BQD1 86 aa6.34□□□□□ -1.39
VPS39-207ENST00000563692 MIEN1Q9BRT3 115 aa6.34□□□□□ -1.39
VPS39-207ENST00000563692 UQCR10Q9UDW1 63 aa6.34□□□□□ -1.39
VPS39-207ENST00000563692 IGHV4-28A0A0C4DH34 117 aa6.33□□□□□ -1.4
VPS39-207ENST00000563692 TEX48A0A1B0GUV7 120 aa6.33□□□□□ -1.4
VPS39-207ENST00000563692 IGIPA6NJ69 53 aa6.33□□□□□ -1.4
VPS39-207ENST00000563692 NPSP0C0P6 89 aa6.33□□□□□ -1.4
VPS39-207ENST00000563692 SPART-AS1P0CW21 52 aa6.33□□□□□ -1.4
VPS39-207ENST00000563692 PLNP26678 52 aa6.33□□□□□ -1.4
VPS39-207ENST00000563692 FHL2Q14192 279 aa6.33□□□□□ -1.4
VPS39-207ENST00000563692 ODF1Q14990 250 aa6.33□□□□□ -1.4
VPS39-207ENST00000563692 PMVKQ15126 192 aa6.33□□□□□ -1.4
VPS39-207ENST00000563692 FAM222AQ5U5X8 452 aa6.33□□□□□ -1.4
VPS39-207ENST00000563692 HHLA3Q9XRX5 114 aa6.33□□□□□ -1.4
VPS39-207ENST00000563692 CHTOPQ9Y3Y2 248 aaKnown RBP6.33□□□□□ -1.4
VPS39-207ENST00000563692 PYGO1Q9Y3Y4 419 aa6.33□□□□□ -1.4
VPS39-207ENST00000563692 hDV102S1A0JD36 115 aa6.32□□□□□ -1.4
VPS39-207ENST00000563692 GAGE12JA6NER3 117 aa6.32□□□□□ -1.4
VPS39-207ENST00000563692 PRSS29PA6NIE9 313 aa6.32□□□□□ -1.4
VPS39-207ENST00000563692 F8VRH5 84 aa6.32□□□□□ -1.4
VPS39-207ENST00000563692 CRYBA4P53673 196 aa6.32□□□□□ -1.4
VPS39-207ENST00000563692 UBE2D3P61077 147 aa6.32□□□□□ -1.4
VPS39-207ENST00000563692 UBE2D2P62837 147 aa6.32□□□□□ -1.4
VPS39-207ENST00000563692 GAGE1Q13065 139 aa6.32□□□□□ -1.4
VPS39-207ENST00000563692 GAGE4Q13068 117 aa6.32□□□□□ -1.4
VPS39-207ENST00000563692 GAGE5Q13069 117 aa6.32□□□□□ -1.4
VPS39-207ENST00000563692 GAGE13Q4V321 117 aa6.32□□□□□ -1.4
VPS39-207ENST00000563692 TMEM97Q5BJF2 176 aa6.32□□□□□ -1.4
VPS39-207ENST00000563692 DEFB104AQ8WTQ1 72 aa6.32□□□□□ -1.4
VPS39-207ENST00000563692 PHLDA1Q8WV24 401 aaPredicted RBP6.32□□□□□ -1.4
VPS39-207ENST00000563692 BAALCQ8WXS3 180 aa6.32□□□□□ -1.4
VPS39-207ENST00000563692 VCX2Q9H322 139 aa6.32□□□□□ -1.4
VPS39-207ENST00000563692 DKK2Q9UBU2 259 aa6.32□□□□□ -1.4
VPS39-207ENST00000563692 IGHV3-38A0A0C4DH36 116 aa6.31□□□□□ -1.4
VPS39-207ENST00000563692 LCE6AA0A183 80 aa6.31□□□□□ -1.4
VPS39-207ENST00000563692 IGLC3P0DOY3 106 aa6.31□□□□□ -1.4
VPS39-207ENST00000563692 DAD1P61803 113 aa6.31□□□□□ -1.4
VPS39-207ENST00000563692 RPL39P62891 51 aaKnown RBP6.31□□□□□ -1.4
VPS39-207ENST00000563692 MAJINQ3KP22 176 aa6.31□□□□□ -1.4
VPS39-207ENST00000563692 DGAT2L7PQ6IED9 249 aa6.31□□□□□ -1.4
VPS39-207ENST00000563692 GTSF1LQ9H1H1 148 aa6.31□□□□□ -1.4
VPS39-207ENST00000563692 SPANXA1Q9NS26 97 aa6.31□□□□□ -1.4
VPS39-207ENST00000563692 MRPL35Q9NZE8 188 aaKnown RBP6.31□□□□□ -1.4
VPS39-207ENST00000563692 PRO0255Q9UI72 69 aa6.31□□□□□ -1.4
VPS39-207ENST00000563692 HUWE1Q7Z6Z7 4374 aaKnown RBP6.3□□□□□ -1.4
VPS39-207ENST00000563692 LINC00587B1AMM8 73 aa6.3□□□□□ -1.4
VPS39-207ENST00000563692 ATP5G1P05496 136 aa6.3□□□□□ -1.4
VPS39-207ENST00000563692 SLC25A34Q6PIV7 304 aa6.3□□□□□ -1.4
VPS39-207ENST00000563692 Q8NAQ8 132 aa6.3□□□□□ -1.4
VPS39-207ENST00000563692 C14orf144Q96I85 54 aa6.3□□□□□ -1.4
VPS39-207ENST00000563692 CHCHD7Q9BUK0 85 aa6.3□□□□□ -1.4
VPS39-207ENST00000563692 CST9LQ9H4G1 147 aa6.3□□□□□ -1.4
VPS39-207ENST00000563692 Q9UF83 564 aa6.3□□□□□ -1.4
VPS39-207ENST00000563692 H7C423 109 aa6.29□□□□□ -1.4
VPS39-207ENST00000563692 UBE2L6O14933 153 aa6.29□□□□□ -1.4
VPS39-207ENST00000563692 DEFB4AO15263 64 aa6.29□□□□□ -1.4
VPS39-207ENST00000563692 STPG4Q8N801 248 aa6.29□□□□□ -1.4
VPS39-207ENST00000563692 TIMM21Q9BVV7 248 aa6.29□□□□□ -1.4
VPS39-207ENST00000563692 KMT2CQ8NEZ4 4911 aaKnown RBP6.28□□□□□ -1.4
VPS39-207ENST00000563692 TRBV25-1A0A075B6N4 114 aa6.28□□□□□ -1.4
VPS39-207ENST00000563692 A0A0J9YWU9 116 aa6.28□□□□□ -1.4
VPS39-207ENST00000563692 PAX4O43316 350 aa6.28□□□□□ -1.4
VPS39-207ENST00000563692 COX8AP10176 69 aa6.28□□□□□ -1.4
VPS39-207ENST00000563692 HNRNPA3P51991 378 aaKnown RBP6.28□□□□□ -1.4
VPS39-207ENST00000563692 ZC2HC1BQ5TFG8 222 aa6.28□□□□□ -1.4
VPS39-207ENST00000563692 TMEM101Q96IK0 257 aa6.28□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 59.9 ms