RNA–Protein interactions for RNA: ENST00000560502.5

LDLR-213, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 509 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-213ENST00000560502 LOC389332A0A1B0GUA5 103 aa9.77□□□□□ -0.85
LDLR-213ENST00000560502 IGHV3-53P01767 116 aa9.77□□□□□ -0.85
LDLR-213ENST00000560502 PRM2P04554 102 aa9.77□□□□□ -0.85
LDLR-213ENST00000560502 GATA1P15976 413 aaPredicted RBP9.77□□□□□ -0.85
LDLR-213ENST00000560502 DAD1P61803 113 aa9.77□□□□□ -0.85
LDLR-213ENST00000560502 ORMDL2Q53FV1 153 aa9.77□□□□□ -0.85
LDLR-213ENST00000560502 LINC00612Q8N6U2 182 aa9.77□□□□□ -0.85
LDLR-213ENST00000560502 OR4C5Q8NGB2 326 aa9.77□□□□□ -0.85
LDLR-213ENST00000560502 DNAJC30Q96LL9 226 aa9.77□□□□□ -0.85
LDLR-213ENST00000560502 NOP10Q9NPE3 64 aaKnown RBP9.77□□□□□ -0.85
LDLR-213ENST00000560502 NIT2Q9NQR4 276 aa9.77□□□□□ -0.85
LDLR-213ENST00000560502 LYRM9A8MSI8 78 aa9.76□□□□□ -0.85
LDLR-213ENST00000560502 GAS8-AS1O95177 125 aa9.76□□□□□ -0.85
LDLR-213ENST00000560502 HBDP02042 147 aa9.76□□□□□ -0.85
LDLR-213ENST00000560502 JOSD1Q15040 202 aaPredicted RBP9.76□□□□□ -0.85
LDLR-213ENST00000560502 C15orf53Q8NAA6 179 aa9.76□□□□□ -0.85
LDLR-213ENST00000560502 TRBV10-1A0A0K0K1A3 114 aa9.75□□□□□ -0.85
LDLR-213ENST00000560502 TRBV27A0A0K0K1C4 114 aa9.75□□□□□ -0.85
LDLR-213ENST00000560502 VCYO14598 125 aa9.75□□□□□ -0.85
LDLR-213ENST00000560502 LEPROTL1O95214 131 aa9.75□□□□□ -0.85
LDLR-213ENST00000560502 FCER1GP30273 86 aa9.75□□□□□ -0.85
LDLR-213ENST00000560502 TNP2Q05952 138 aa9.75□□□□□ -0.85
LDLR-213ENST00000560502 LAGE3Q14657 143 aa9.75□□□□□ -0.85
LDLR-213ENST00000560502 Q6ZTI0 123 aa9.75□□□□□ -0.85
LDLR-213ENST00000560502 FAM19A2Q8N3H0 131 aa9.75□□□□□ -0.85
LDLR-213ENST00000560502 RPL39LQ96EH5 51 aaKnown RBP9.75□□□□□ -0.85
LDLR-213ENST00000560502 TMEM70Q9BUB7 260 aa9.75□□□□□ -0.85
LDLR-213ENST00000560502 CDK2AP2O75956 126 aa9.74□□□□□ -0.85
LDLR-213ENST00000560502 POLR2KP53803 58 aaKnown RBP9.74□□□□□ -0.85
LDLR-213ENST00000560502 ZNRF2Q8NHG8 242 aa9.74□□□□□ -0.85
LDLR-213ENST00000560502 KIR2DL4Q99706 377 aa9.74□□□□□ -0.85
LDLR-213ENST00000560502 TRGV2A0A075B6R0 118 aa9.73□□□□□ -0.85
LDLR-213ENST00000560502 SDHAF1A6NFY7 115 aa9.73□□□□□ -0.85
LDLR-213ENST00000560502 LINC00518Q8N0U6 118 aa9.73□□□□□ -0.85
LDLR-213ENST00000560502 APOBP04114 4563 aaKnown RBP9.73□□□□□ -0.85
LDLR-213ENST00000560502 NBDYA0A0U1RRE5 68 aa9.72□□□□□ -0.85
LDLR-213ENST00000560502 BTF3P20290 206 aaKnown RBP9.72□□□□□ -0.85
LDLR-213ENST00000560502 RHOHQ15669 191 aa9.72□□□□□ -0.85
LDLR-213ENST00000560502 PYY3Q5JQD4 70 aa9.72□□□□□ -0.85
LDLR-213ENST00000560502 TNFRSF18Q9Y5U5 241 aa9.72□□□□□ -0.85
LDLR-213ENST00000560502 A0A096LNJ9 63 aa9.71□□□□□ -0.86
LDLR-213ENST00000560502 TRBV6-4A0A1B0GX49 114 aa9.71□□□□□ -0.86
LDLR-213ENST00000560502 GAGE12BA1L429 117 aa9.71□□□□□ -0.86
LDLR-213ENST00000560502 C16orf90A8MZG2 172 aa9.71□□□□□ -0.86
LDLR-213ENST00000560502 K7EQD1 137 aa9.71□□□□□ -0.86
LDLR-213ENST00000560502 GAGE7O76087 117 aa9.71□□□□□ -0.86
LDLR-213ENST00000560502 GAGE12FP0CL80 117 aa9.71□□□□□ -0.86
LDLR-213ENST00000560502 GAGE12GP0CL81 117 aa9.71□□□□□ -0.86
LDLR-213ENST00000560502 GAGE12IP0CL82 117 aa9.71□□□□□ -0.86
LDLR-213ENST00000560502 C6orf223Q8N319 242 aa9.71□□□□□ -0.86
LDLR-213ENST00000560502 C12orf57Q99622 126 aa9.71□□□□□ -0.86
LDLR-213ENST00000560502 MAP1LC3CQ9BXW4 147 aa9.71□□□□□ -0.86
LDLR-213ENST00000560502 C20orf202A1L168 122 aa9.7□□□□□ -0.86
LDLR-213ENST00000560502 I3L3M4 83 aa9.7□□□□□ -0.86
LDLR-213ENST00000560502 ATP5LO75964 103 aa9.7□□□□□ -0.86
LDLR-213ENST00000560502 C3orf79P0CE67 100 aa9.7□□□□□ -0.86
LDLR-213ENST00000560502 KRTDAPP60985 99 aa9.7□□□□□ -0.86
LDLR-213ENST00000560502 PMCHL1Q16048 86 aa9.7□□□□□ -0.86
LDLR-213ENST00000560502 SPATA12Q7Z6I5 190 aa9.7□□□□□ -0.86
LDLR-213ENST00000560502 ZNF479Q96JC4 524 aa9.7□□□□□ -0.86
LDLR-213ENST00000560502 IGHV3-73A0A0B4J1V6 119 aa9.69□□□□□ -0.86
LDLR-213ENST00000560502 NUDT3O95989 172 aa9.69□□□□□ -0.86
LDLR-213ENST00000560502 DEFB130BP0DP73 79 aa9.69□□□□□ -0.86
LDLR-213ENST00000560502 DEFB130AP0DP74 79 aa9.69□□□□□ -0.86
LDLR-213ENST00000560502 RPL36AP83881 106 aaKnown RBP9.69□□□□□ -0.86
LDLR-213ENST00000560502 PET117Q6UWS5 81 aa9.69□□□□□ -0.86
LDLR-213ENST00000560502 NEXN-AS1Q8NBZ9 246 aa9.69□□□□□ -0.86
LDLR-213ENST00000560502 RPL36ALQ969Q0 106 aaKnown RBP9.69□□□□□ -0.86
LDLR-213ENST00000560502 TRGV4A0A0C4DH28 118 aa9.68□□□□□ -0.86
LDLR-213ENST00000560502 F5H768 121 aa9.68□□□□□ -0.86
LDLR-213ENST00000560502 SYS1-DBNDD2H3BUS1 97 aa9.68□□□□□ -0.86
LDLR-213ENST00000560502 TOMM6Q96B49 74 aa9.68□□□□□ -0.86
LDLR-213ENST00000560502 PRADC1Q9BSG0 188 aa9.68□□□□□ -0.86
LDLR-213ENST00000560502 LINC00588Q9Y4M8 146 aa9.68□□□□□ -0.86
LDLR-213ENST00000560502 DNAH5Q8TE73 4624 aa9.68□□□□□ -0.86
LDLR-213ENST00000560502 TRBV7-3A0A075B6L6 115 aa9.67□□□□□ -0.86
LDLR-213ENST00000560502 SCGB1D1O95968 90 aa9.67□□□□□ -0.86
LDLR-213ENST00000560502 ATP5G1P05496 136 aa9.67□□□□□ -0.86
LDLR-213ENST00000560502 Q6ZSN1 163 aa9.67□□□□□ -0.86
LDLR-213ENST00000560502 DAZ4Q86SG3 579 aaKnown RBP9.67□□□□□ -0.86
LDLR-213ENST00000560502 MAPKAPK5-AS1Q8N8E1 139 aa9.67□□□□□ -0.86
LDLR-213ENST00000560502 IFI27L1Q96BM0 104 aa9.67□□□□□ -0.86
LDLR-213ENST00000560502 DAZ3Q9NR90 486 aaKnown RBP9.67□□□□□ -0.86
LDLR-213ENST00000560502 CYSLTR1Q9Y271 337 aa9.67□□□□□ -0.86
LDLR-213ENST00000560502 CCL18P55774 89 aa9.66□□□□□ -0.86
LDLR-213ENST00000560502 S100A12P80511 92 aa9.66□□□□□ -0.86
LDLR-213ENST00000560502 SLC25A29Q8N8R3 303 aa9.66□□□□□ -0.86
LDLR-213ENST00000560502 TSHBP01222 138 aa9.65□□□□□ -0.86
LDLR-213ENST00000560502 NPSP0C0P6 89 aa9.65□□□□□ -0.86
LDLR-213ENST00000560502 FHL2Q14192 279 aa9.65□□□□□ -0.86
LDLR-213ENST00000560502 C2orf66Q6UXQ4 117 aa9.65□□□□□ -0.86
LDLR-213ENST00000560502 Q8N1X5 172 aa9.65□□□□□ -0.86
LDLR-213ENST00000560502 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP9.64□□□□□ -0.87
LDLR-213ENST00000560502 COTL1Q14019 142 aa9.64□□□□□ -0.87
LDLR-213ENST00000560502 TMEM97Q5BJF2 176 aa9.64□□□□□ -0.87
LDLR-213ENST00000560502 LINC01545Q5VT33 79 aa9.64□□□□□ -0.87
LDLR-213ENST00000560502 TEX43Q6ZNM6 134 aa9.64□□□□□ -0.87
LDLR-213ENST00000560502 ERASQ7Z444 233 aa9.64□□□□□ -0.87
LDLR-213ENST00000560502 Q8N976 141 aa9.64□□□□□ -0.87
LDLR-213ENST00000560502 TMEM141Q96I45 108 aa9.64□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 54.8 ms