RNA–Protein interactions for RNA: ENST00000557269.5

SHMT2-227, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 576 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-227ENST00000557269 COTL1Q14019 142 aa8.71□□□□□ -1.02
SHMT2-227ENST00000557269 IQCJQ1A5X6 159 aa8.71□□□□□ -1.02
SHMT2-227ENST00000557269 CHCHD7Q9BUK0 85 aa8.71□□□□□ -1.02
SHMT2-227ENST00000557269 SMIM2Q9BVW6 85 aa8.71□□□□□ -1.02
SHMT2-227ENST00000557269 TRBV25-1A0A075B6N4 114 aa8.7□□□□□ -1.02
SHMT2-227ENST00000557269 IGHV1-24A0A0C4DH33 117 aa8.7□□□□□ -1.02
SHMT2-227ENST00000557269 PRSS47A8MTI9 375 aa8.7□□□□□ -1.02
SHMT2-227ENST00000557269 IGHV3-30P01768 117 aa8.7□□□□□ -1.02
SHMT2-227ENST00000557269 IGHV3-33P01772 117 aa8.7□□□□□ -1.02
SHMT2-227ENST00000557269 IGHV3-30-3P0DP02 117 aa8.7□□□□□ -1.02
SHMT2-227ENST00000557269 IGHV3-30-5P0DP03 117 aa8.7□□□□□ -1.02
SHMT2-227ENST00000557269 RPL32P62910 135 aaKnown RBP8.7□□□□□ -1.02
SHMT2-227ENST00000557269 TMEM97Q5BJF2 176 aa8.7□□□□□ -1.02
SHMT2-227ENST00000557269 NIT1Q86X76 327 aa8.7□□□□□ -1.02
SHMT2-227ENST00000557269 LAMTOR2Q9Y2Q5 125 aa8.7□□□□□ -1.02
SHMT2-227ENST00000557269 NBDYA0A0U1RRE5 68 aa8.69□□□□□ -1.02
SHMT2-227ENST00000557269 TCAPO15273 167 aa8.69□□□□□ -1.02
SHMT2-227ENST00000557269 RAB5AP20339 215 aa8.69□□□□□ -1.02
SHMT2-227ENST00000557269 AMTP48728 403 aa8.69□□□□□ -1.02
SHMT2-227ENST00000557269 GAGE6Q13070 117 aa8.69□□□□□ -1.02
SHMT2-227ENST00000557269 Q6ZR54 194 aa8.69□□□□□ -1.02
SHMT2-227ENST00000557269 CHCHD5Q9BSY4 110 aa8.69□□□□□ -1.02
SHMT2-227ENST00000557269 TMEM243Q9BU79 118 aa8.69□□□□□ -1.02
SHMT2-227ENST00000557269 ESDP10768 282 aa8.68□□□□□ -1.02
SHMT2-227ENST00000557269 LINC01556Q5JQF7 62 aa8.68□□□□□ -1.02
SHMT2-227ENST00000557269 MAP1LC3AQ9H492 121 aa8.68□□□□□ -1.02
SHMT2-227ENST00000557269 KMT2AQ03164 3969 aa8.68□□□□□ -1.02
SHMT2-227ENST00000557269 RYR2Q92736 4967 aa8.67□□□□□ -1.02
SHMT2-227ENST00000557269 IGKV2D-29A0A075B6S2 120 aaPredicted RBP8.67□□□□□ -1.02
SHMT2-227ENST00000557269 IGKV2-29A2NJV5 120 aaPredicted RBP8.67□□□□□ -1.02
SHMT2-227ENST00000557269 TMEM262E9PQX1 116 aa8.67□□□□□ -1.02
SHMT2-227ENST00000557269 TRGC2P03986 189 aa8.67□□□□□ -1.02
SHMT2-227ENST00000557269 FCER1GP30273 86 aa8.67□□□□□ -1.02
SHMT2-227ENST00000557269 IFI27P40305 119 aaPredicted RBP8.67□□□□□ -1.02
SHMT2-227ENST00000557269 MPV17L2Q567V2 206 aa8.67□□□□□ -1.02
SHMT2-227ENST00000557269 Q8N8P6 123 aa8.67□□□□□ -1.02
SHMT2-227ENST00000557269 KIR2DL4Q99706 377 aa8.67□□□□□ -1.02
SHMT2-227ENST00000557269 DNAH6Q9C0G6 4158 aa8.66□□□□□ -1.02
SHMT2-227ENST00000557269 Q8N976 141 aa8.66□□□□□ -1.02
SHMT2-227ENST00000557269 RBX1P62877 108 aa8.65□□□□□ -1.02
SHMT2-227ENST00000557269 C18orf32Q8TCD1 76 aa8.65□□□□□ -1.02
SHMT2-227ENST00000557269 IGLV4-60A0A075B6I1 120 aa8.64□□□□□ -1.03
SHMT2-227ENST00000557269 A0A087WX48 190 aa8.64□□□□□ -1.03
SHMT2-227ENST00000557269 URB1-AS1Q96HZ7 61 aa8.64□□□□□ -1.03
SHMT2-227ENST00000557269 IBA57-AS1B1ANH7 110 aa8.63□□□□□ -1.03
SHMT2-227ENST00000557269 UBE2L6O14933 153 aa8.63□□□□□ -1.03
SHMT2-227ENST00000557269 FGF6P10767 208 aa8.63□□□□□ -1.03
SHMT2-227ENST00000557269 RPL39P62891 51 aaKnown RBP8.63□□□□□ -1.03
SHMT2-227ENST00000557269 TTC32Q5I0X7 151 aa8.63□□□□□ -1.03
SHMT2-227ENST00000557269 C20orf203Q8NBC4 194 aa8.63□□□□□ -1.03
SHMT2-227ENST00000557269 PRSS3P2Q8NHM4 247 aa8.63□□□□□ -1.03
SHMT2-227ENST00000557269 NXT2Q9NPJ8 142 aaKnown RBP8.63□□□□□ -1.03
SHMT2-227ENST00000557269 KLK12Q9UKR0 248 aa8.63□□□□□ -1.03
SHMT2-227ENST00000557269 TRAV9-2A0A087WT02 112 aa8.62□□□□□ -1.03
SHMT2-227ENST00000557269 LINC01546A6NGU7 62 aa8.62□□□□□ -1.03
SHMT2-227ENST00000557269 H7C423 109 aa8.62□□□□□ -1.03
SHMT2-227ENST00000557269 RYR3Q15413 4870 aa8.62□□□□□ -1.03
SHMT2-227ENST00000557269 A0A1B0GUV1 79 aa8.61□□□□□ -1.03
SHMT2-227ENST00000557269 ANGP03950 147 aaKnown RBP8.61□□□□□ -1.03
SHMT2-227ENST00000557269 LAGE3Q14657 143 aa8.61□□□□□ -1.03
SHMT2-227ENST00000557269 AMMECR1LQ6DCA0 310 aa8.61□□□□□ -1.03
SHMT2-227ENST00000557269 RNASEKQ6P5S7 137 aaKnown RBP8.61□□□□□ -1.03
SHMT2-227ENST00000557269 ENHOQ6UWT2 76 aa8.61□□□□□ -1.03
SHMT2-227ENST00000557269 UBE2D4Q9Y2X8 147 aa8.61□□□□□ -1.03
SHMT2-227ENST00000557269 K7EP13 123 aa8.6□□□□□ -1.03
SHMT2-227ENST00000557269 PKIAP61925 76 aa8.6□□□□□ -1.03
SHMT2-227ENST00000557269 CLPSL2Q6UWE3 100 aa8.6□□□□□ -1.03
SHMT2-227ENST00000557269 MRPL52Q86TS9 123 aaKnown RBP8.6□□□□□ -1.03
SHMT2-227ENST00000557269 LINC00269Q8N2A0 174 aa8.6□□□□□ -1.03
SHMT2-227ENST00000557269 C10orf126Q8N4M7 172 aa8.6□□□□□ -1.03
SHMT2-227ENST00000557269 FAM104AQ969W3 186 aa8.6□□□□□ -1.03
SHMT2-227ENST00000557269 Q9HAA7 133 aa8.6□□□□□ -1.03
SHMT2-227ENST00000557269 RTL8CO15255 209 aa8.59□□□□□ -1.03
SHMT2-227ENST00000557269 C1orf134Q5TEV5 83 aa8.59□□□□□ -1.03
SHMT2-227ENST00000557269 FA2HQ7L5A8 372 aa8.59□□□□□ -1.03
SHMT2-227ENST00000557269 C6orf223Q8N319 242 aa8.59□□□□□ -1.03
SHMT2-227ENST00000557269 UBE2WQ96B02 151 aa8.59□□□□□ -1.03
SHMT2-227ENST00000557269 OPRPNQ99935 248 aaPredicted RBP8.59□□□□□ -1.03
SHMT2-227ENST00000557269 DNAH2Q9P225 4427 aa8.58□□□□□ -1.04
SHMT2-227ENST00000557269 K7EMI3 77 aa8.58□□□□□ -1.04
SHMT2-227ENST00000557269 LINC00614P0C842 121 aa8.58□□□□□ -1.04
SHMT2-227ENST00000557269 ZNF25P17030 456 aaPredicted RBP8.58□□□□□ -1.04
SHMT2-227ENST00000557269 ORMDL2Q53FV1 153 aa8.58□□□□□ -1.04
SHMT2-227ENST00000557269 C2orf66Q6UXQ4 117 aa8.58□□□□□ -1.04
SHMT2-227ENST00000557269 Q6ZRN7 208 aaPredicted RBP8.58□□□□□ -1.04
SHMT2-227ENST00000557269 CDC42SE2Q9NRR3 84 aa8.58□□□□□ -1.04
SHMT2-227ENST00000557269 PRR34Q9NV39 138 aa8.58□□□□□ -1.04
SHMT2-227ENST00000557269 A0A096LNJ9 63 aa8.57□□□□□ -1.04
SHMT2-227ENST00000557269 BTF3P20290 206 aaKnown RBP8.57□□□□□ -1.04
SHMT2-227ENST00000557269 LINC00310P59036 64 aa8.57□□□□□ -1.04
SHMT2-227ENST00000557269 REG3AQ06141 175 aa8.57□□□□□ -1.04
SHMT2-227ENST00000557269 Q0VG73 95 aa8.57□□□□□ -1.04
SHMT2-227ENST00000557269 PMCHL1Q16048 86 aa8.57□□□□□ -1.04
SHMT2-227ENST00000557269 RNASE13Q5GAN3 156 aaKnown RBP8.57□□□□□ -1.04
SHMT2-227ENST00000557269 Q6ZUT4 128 aa8.57□□□□□ -1.04
SHMT2-227ENST00000557269 ZNF664Q8N3J9 261 aa8.57□□□□□ -1.04
SHMT2-227ENST00000557269 OR5A1Q8NGJ0 315 aa8.57□□□□□ -1.04
SHMT2-227ENST00000557269 TMEM18Q96B42 140 aa8.57□□□□□ -1.04
SHMT2-227ENST00000557269 TIMM21Q9BVV7 248 aa8.57□□□□□ -1.04
SHMT2-227ENST00000557269 IGKV3OR2-268A0A0C4DH90 116 aa8.56□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 637.8 ms