RNA–Protein interactions for RNA: ENST00000462429.1

VPS41-210, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 3

Gene VPS41, Length 347 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-210ENST00000462429 BAGE3Q86Y29 109 aa1.97□□□□□ -2.09
VPS41-210ENST00000462429 Q8N6K4 173 aa1.97□□□□□ -2.09
VPS41-210ENST00000462429 TSKUQ8WUA8 353 aa1.97□□□□□ -2.09
VPS41-210ENST00000462429 HIST1H2BHQ93079 126 aa1.97□□□□□ -2.09
VPS41-210ENST00000462429 FAM167A-AS1Q96KT0 104 aa1.97□□□□□ -2.09
VPS41-210ENST00000462429 PACRGQ96M98 296 aaPredicted RBP1.97□□□□□ -2.09
VPS41-210ENST00000462429 C12orf57Q99622 126 aa1.97□□□□□ -2.09
VPS41-210ENST00000462429 HIST1H2BNQ99877 126 aa1.97□□□□□ -2.09
VPS41-210ENST00000462429 HIST1H2BMQ99879 126 aa1.97□□□□□ -2.09
VPS41-210ENST00000462429 HIGD2AQ9BW72 106 aa1.97□□□□□ -2.09
VPS41-210ENST00000462429 MRPL16Q9NX20 251 aaKnown RBP1.97□□□□□ -2.09
VPS41-210ENST00000462429 MRPL27Q9P0M9 148 aaKnown RBP1.97□□□□□ -2.09
VPS41-210ENST00000462429 KLK9Q9UKQ9 250 aa1.97□□□□□ -2.09
VPS41-210ENST00000462429 TLN1Q9Y490 2541 aaKnown RBP1.97□□□□□ -2.09
VPS41-210ENST00000462429 PIEZO2Q9H5I5 2752 aa1.97□□□□□ -2.09
VPS41-210ENST00000462429 SPTBN1Q01082 2364 aaKnown RBP1.96□□□□□ -2.09
VPS41-210ENST00000462429 ANKRD11Q6UB99 2663 aaPredicted RBP1.96□□□□□ -2.1
VPS41-210ENST00000462429 LOC400499M0QZD8 3231 aa1.96□□□□□ -2.1
VPS41-210ENST00000462429 SMIM27A0A1W2PRY6 76 aa1.96□□□□□ -2.1
VPS41-210ENST00000462429 OR2T8A6NH00 312 aa1.96□□□□□ -2.1
VPS41-210ENST00000462429 FABP5P3A8MUU1 101 aa1.96□□□□□ -2.1
VPS41-210ENST00000462429 HIGD1CA8MV81 97 aa1.96□□□□□ -2.1
VPS41-210ENST00000462429 A8MWP6 167 aa1.96□□□□□ -2.1
VPS41-210ENST00000462429 F2Z2F3 143 aa1.96□□□□□ -2.1
VPS41-210ENST00000462429 NDUFA4O00483 81 aa1.96□□□□□ -2.1
VPS41-210ENST00000462429 ATP5G1P05496 136 aa1.96□□□□□ -2.1
VPS41-210ENST00000462429 CXCL1P09341 107 aa1.96□□□□□ -2.1
VPS41-210ENST00000462429 LINC00614P0C842 121 aa1.96□□□□□ -2.1
VPS41-210ENST00000462429 PYYP10082 97 aa1.96□□□□□ -2.1
VPS41-210ENST00000462429 FABP4P15090 132 aa1.96□□□□□ -2.1
VPS41-210ENST00000462429 G0S2P27469 103 aa1.96□□□□□ -2.1
VPS41-210ENST00000462429 LINC00313P59037 77 aa1.96□□□□□ -2.1
VPS41-210ENST00000462429 HERVK_113P63121 156 aa1.96□□□□□ -2.1
VPS41-210ENST00000462429 HBBP68871 147 aa1.96□□□□□ -2.1
VPS41-210ENST00000462429 RHOGP84095 191 aa1.96□□□□□ -2.1
VPS41-210ENST00000462429 Q0VG73 95 aa1.96□□□□□ -2.1
VPS41-210ENST00000462429 KLRD1Q13241 179 aa1.96□□□□□ -2.1
VPS41-210ENST00000462429 TMEM78Q5T7P6 136 aa1.96□□□□□ -2.1
VPS41-210ENST00000462429 PATE2Q6UY27 113 aa1.96□□□□□ -2.1
VPS41-210ENST00000462429 Q6ZRU5 148 aa1.96□□□□□ -2.1
VPS41-210ENST00000462429 SIGLECL1Q8N7X8 197 aa1.96□□□□□ -2.1
VPS41-210ENST00000462429 C5orf56Q8N8D9 126 aa1.96□□□□□ -2.1
VPS41-210ENST00000462429 FAM103A1Q9BTL3 118 aaKnown RBP1.96□□□□□ -2.1
VPS41-210ENST00000462429 DERL1Q9BUN8 251 aa1.96□□□□□ -2.1
VPS41-210ENST00000462429 NIT2Q9NQR4 276 aa1.96□□□□□ -2.1
VPS41-210ENST00000462429 MRPS16Q9Y3D3 137 aaKnown RBP1.96□□□□□ -2.1
VPS41-210ENST00000462429 LENEPQ9Y5L5 61 aa1.96□□□□□ -2.1
VPS41-210ENST00000462429 V9GYV3 84 aa1.96□□□□□ -2.1
VPS41-210ENST00000462429 DMXL1Q9Y485 3027 aa1.96□□□□□ -2.1
VPS41-210ENST00000462429 PIEZO1Q92508 2521 aa1.96□□□□□ -2.1
VPS41-210ENST00000462429 WNK2Q9Y3S1 2297 aa1.96□□□□□ -2.1
VPS41-210ENST00000462429 MGAQ8IWI9 3026 aa1.96□□□□□ -2.1
VPS41-210ENST00000462429 TRBV20OR9-2A0A075B6H5 130 aa1.95□□□□□ -2.1
VPS41-210ENST00000462429 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP1.95□□□□□ -2.1
VPS41-210ENST00000462429 TRAV5A0A0B4J249 113 aa1.95□□□□□ -2.1
VPS41-210ENST00000462429 A0A1B0GUT8 65 aa1.95□□□□□ -2.1
VPS41-210ENST00000462429 A0A1W2PNM2 257 aa1.95□□□□□ -2.1
VPS41-210ENST00000462429 C20orf202A1L168 122 aa1.95□□□□□ -2.1
VPS41-210ENST00000462429 TMEM189A5PLL7 270 aa1.95□□□□□ -2.1
VPS41-210ENST00000462429 LINC01549A6NIU2 74 aa1.95□□□□□ -2.1
VPS41-210ENST00000462429 H3BUX3 64 aa1.95□□□□□ -2.1
VPS41-210ENST00000462429 C19orf84I3L1E1 186 aa1.95□□□□□ -2.1
VPS41-210ENST00000462429 SLC17A3O00476 420 aa1.95□□□□□ -2.1
VPS41-210ENST00000462429 OVOL1O14753 267 aa1.95□□□□□ -2.1
VPS41-210ENST00000462429 PSCAO43653 123 aa1.95□□□□□ -2.1
VPS41-210ENST00000462429 PPP1R17O96001 155 aa1.95□□□□□ -2.1
VPS41-210ENST00000462429 PPBPP02775 128 aa1.95□□□□□ -2.1
VPS41-210ENST00000462429 IGLC2P0DOY2 106 aa1.95□□□□□ -2.1
VPS41-210ENST00000462429 CD24P25063 80 aa1.95□□□□□ -2.1
VPS41-210ENST00000462429 FOXA3P55318 350 aaPredicted RBP1.95□□□□□ -2.1
VPS41-210ENST00000462429 DAD1P61803 113 aa1.95□□□□□ -2.1
VPS41-210ENST00000462429 PKIAP61925 76 aa1.95□□□□□ -2.1
VPS41-210ENST00000462429 SNRPD3P62318 126 aaKnown RBP1.95□□□□□ -2.1
VPS41-210ENST00000462429 PMCHL1Q16048 86 aa1.95□□□□□ -2.1
VPS41-210ENST00000462429 DEFB113Q30KQ7 82 aa1.95□□□□□ -2.1
VPS41-210ENST00000462429 FAM229BQ4G0N7 80 aa1.95□□□□□ -2.1
VPS41-210ENST00000462429 PSMG4Q5JS54 123 aa1.95□□□□□ -2.1
VPS41-210ENST00000462429 TOMM20LQ6UXN7 152 aa1.95□□□□□ -2.1
VPS41-210ENST00000462429 GOLT1AQ6ZVE7 132 aa1.95□□□□□ -2.1
VPS41-210ENST00000462429 FAM19A5Q7Z5A7 132 aaPredicted RBP1.95□□□□□ -2.1
VPS41-210ENST00000462429 HIST3H2BBQ8N257 126 aa1.95□□□□□ -2.1
VPS41-210ENST00000462429 TMEM86BQ8N661 226 aa1.95□□□□□ -2.1
VPS41-210ENST00000462429 ZFAND2AQ8N6M9 145 aa1.95□□□□□ -2.1
VPS41-210ENST00000462429 NUP35Q8NFH5 326 aa1.95□□□□□ -2.1
VPS41-210ENST00000462429 OR2D3Q8NGH3 330 aa1.95□□□□□ -2.1
VPS41-210ENST00000462429 CHCHD1Q96BP2 118 aaKnown RBP1.95□□□□□ -2.1
VPS41-210ENST00000462429 RNASE7Q9H1E1 156 aaKnown RBP1.95□□□□□ -2.1
VPS41-210ENST00000462429 LAMTOR2Q9Y2Q5 125 aa1.95□□□□□ -2.1
VPS41-210ENST00000462429 UFC1Q9Y3C8 167 aa1.95□□□□□ -2.1
VPS41-210ENST00000462429 CACNA1BQ00975 2339 aa1.95□□□□□ -2.1
VPS41-210ENST00000462429 HIVEP3Q5T1R4 2406 aa1.95□□□□□ -2.1
VPS41-210ENST00000462429 NBASA2RRP1 2371 aa1.94□□□□□ -2.1
VPS41-210ENST00000462429 FRYQ5TBA9 3013 aa1.94□□□□□ -2.1
VPS41-210ENST00000462429 C3orf84H3BNL1 204 aa1.94□□□□□ -2.1
VPS41-210ENST00000462429 J3QKU1 62 aa1.94□□□□□ -2.1
VPS41-210ENST00000462429 ESDP10768 282 aa1.94□□□□□ -2.1
VPS41-210ENST00000462429 LGALS3P17931 250 aaKnown RBP1.94□□□□□ -2.1
VPS41-210ENST00000462429 CBLN1P23435 193 aa1.94□□□□□ -2.1
VPS41-210ENST00000462429 SRIP30626 198 aa1.94□□□□□ -2.1
VPS41-210ENST00000462429 HIST1H1AQ02539 215 aaPredicted RBP1.94□□□□□ -2.1
Retrieved 100 of 20,778 RNA–protein pairs in 53.1 ms