RNA–Protein interactions for RNA: ENST00000639002.1

CD44-239, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 528 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-239ENST00000639002 Q1T7F1 81 aa1.01□□□□□ -2.25
CD44-239ENST00000639002 NCMAPQ5T1S8 102 aa1.01□□□□□ -2.25
CD44-239ENST00000639002 LINC00299Q6ZSB3 139 aa1.01□□□□□ -2.25
CD44-239ENST00000639002 C4orf33Q8N1A6 199 aa1.01□□□□□ -2.25
CD44-239ENST00000639002 FAM19A2Q8N3H0 131 aa1.01□□□□□ -2.25
CD44-239ENST00000639002 C9orf163Q8N9P6 203 aa1.01□□□□□ -2.25
CD44-239ENST00000639002 TMEM141Q96I45 108 aa1.01□□□□□ -2.25
CD44-239ENST00000639002 TTTY12Q9BZ98 90 aa1.01□□□□□ -2.25
CD44-239ENST00000639002 V9GYS6 101 aa1.01□□□□□ -2.25
CD44-239ENST00000639002 CITO14578 2027 aa1.01□□□□□ -2.25
CD44-239ENST00000639002 KIAA1549Q9HCM3 1950 aa1.01□□□□□ -2.25
CD44-239ENST00000639002 CEP192Q8TEP8 1941 aa1.01□□□□□ -2.25
CD44-239ENST00000639002 SIP14410 1827 aa1.01□□□□□ -2.25
CD44-239ENST00000639002 ABCA3Q99758 1704 aa1.01□□□□□ -2.25
CD44-239ENST00000639002 SPTA1P02549 2419 aa1□□□□□ -2.25
CD44-239ENST00000639002 FAM186AA6NE01 2351 aa1□□□□□ -2.25
CD44-239ENST00000639002 PXDNLA1KZ92 1463 aa1□□□□□ -2.25
CD44-239ENST00000639002 PTPRDP23468 1912 aa1□□□□□ -2.25
CD44-239ENST00000639002 CCL16O15467 120 aa1□□□□□ -2.25
CD44-239ENST00000639002 IGHV3-33P01772 117 aa1□□□□□ -2.25
CD44-239ENST00000639002 IL7P13232 177 aa1□□□□□ -2.25
CD44-239ENST00000639002 CBLN1P23435 193 aa1□□□□□ -2.25
CD44-239ENST00000639002 DCDP81605 110 aaKnown RBP1□□□□□ -2.25
CD44-239ENST00000639002 SLC48A1Q6P1K1 146 aa1□□□□□ -2.25
CD44-239ENST00000639002 Q6ZS92 163 aa1□□□□□ -2.25
CD44-239ENST00000639002 ZCCHC23Q6ZST2 131 aa1□□□□□ -2.25
CD44-239ENST00000639002 FP248Q71RG6 208 aaPredicted RBP1□□□□□ -2.25
CD44-239ENST00000639002 Q8TAT8 98 aa1□□□□□ -2.25
CD44-239ENST00000639002 LINC00052Q96N35 136 aa1□□□□□ -2.25
CD44-239ENST00000639002 DPY30Q9C005 99 aa1□□□□□ -2.25
CD44-239ENST00000639002 ATG5Q9H1Y0 275 aa1□□□□□ -2.25
CD44-239ENST00000639002 SNURFQ9Y675 71 aa1□□□□□ -2.25
CD44-239ENST00000639002 RBBP6Q7Z6E9 1792 aaKnown RBP1□□□□□ -2.25
CD44-239ENST00000639002 CASZ1Q86V15 1759 aa1□□□□□ -2.25
CD44-239ENST00000639002 COL4A2P08572 1712 aa1□□□□□ -2.25
CD44-239ENST00000639002 MXRA5Q9NR99 2828 aa1□□□□□ -2.25
CD44-239ENST00000639002 CICQ96RK0 1608 aaPredicted RBP1□□□□□ -2.25
CD44-239ENST00000639002 ABCC10Q5T3U5 1492 aa0.99□□□□□ -2.25
CD44-239ENST00000639002 FYCO1Q9BQS8 1478 aa0.99□□□□□ -2.25
CD44-239ENST00000639002 HERC2O95714 4834 aa0.99□□□□□ -2.25
CD44-239ENST00000639002 MYH8P13535 1937 aa0.99□□□□□ -2.25
CD44-239ENST00000639002 ALPK3Q96L96 1907 aa0.99□□□□□ -2.25
CD44-239ENST00000639002 KIAA1551Q9HCM1 1747 aa0.99□□□□□ -2.25
CD44-239ENST00000639002 IGLV3-32A0A0A0MS00 114 aa0.99□□□□□ -2.25
CD44-239ENST00000639002 TRBV10-1A0A0K0K1A3 114 aa0.99□□□□□ -2.25
CD44-239ENST00000639002 UBE2L5PA0A1B0GUS4 154 aa0.99□□□□□ -2.25
CD44-239ENST00000639002 IGKV2-29A2NJV5 120 aaPredicted RBP0.99□□□□□ -2.25
CD44-239ENST00000639002 H3BQ15 152 aa0.99□□□□□ -2.25
CD44-239ENST00000639002 SSSCA1O60232 199 aa0.99□□□□□ -2.25
CD44-239ENST00000639002 KRTDAPP60985 99 aa0.99□□□□□ -2.25
CD44-239ENST00000639002 CNBPP62633 177 aaKnown RBP0.99□□□□□ -2.25
CD44-239ENST00000639002 UBA52P62987 128 aaKnown RBP0.99□□□□□ -2.25
CD44-239ENST00000639002 UBE2L3P68036 154 aaKnown RBP0.99□□□□□ -2.25
CD44-239ENST00000639002 C10orf55Q5SWW7 151 aa0.99□□□□□ -2.25
CD44-239ENST00000639002 S100A7L2Q5SY68 101 aa0.99□□□□□ -2.25
CD44-239ENST00000639002 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP0.99□□□□□ -2.25
CD44-239ENST00000639002 COA5Q86WW8 74 aa0.99□□□□□ -2.25
CD44-239ENST00000639002 NDUFA11Q86Y39 141 aa0.99□□□□□ -2.25
CD44-239ENST00000639002 MYOZ3Q8TDC0 251 aa0.99□□□□□ -2.25
CD44-239ENST00000639002 C10orf105Q8TEF2 133 aa0.99□□□□□ -2.25
CD44-239ENST00000639002 PATE1Q8WXA2 126 aa0.99□□□□□ -2.25
CD44-239ENST00000639002 VAMP8Q9BV40 100 aa0.99□□□□□ -2.25
CD44-239ENST00000639002 TMEM14CQ9P0S9 112 aa0.99□□□□□ -2.25
CD44-239ENST00000639002 NDUFA12Q9UI09 145 aa0.99□□□□□ -2.25
CD44-239ENST00000639002 TOP2BQ02880 1626 aa0.99□□□□□ -2.25
CD44-239ENST00000639002 EML5Q05BV3 1969 aa0.99□□□□□ -2.25
CD44-239ENST00000639002 PCDH15Q96QU1 1955 aa0.99□□□□□ -2.25
CD44-239ENST00000639002 CCDC18Q5T9S5 1454 aa0.99□□□□□ -2.25
CD44-239ENST00000639002 RAPGEF2Q9Y4G8 1499 aa0.99□□□□□ -2.25
CD44-239ENST00000639002 DOCK2Q92608 1830 aa0.99□□□□□ -2.25
CD44-239ENST00000639002 PPIP5K1Q6PFW1 1433 aa0.98□□□□□ -2.25
CD44-239ENST00000639002 LAMB1P07942 1786 aa0.98□□□□□ -2.25
CD44-239ENST00000639002 SPHKAPQ2M3C7 1700 aa0.98□□□□□ -2.25
CD44-239ENST00000639002 TNS1Q9HBL0 1735 aaKnown RBP0.98□□□□□ -2.25
CD44-239ENST00000639002 MICAL3Q7RTP6 2002 aa0.98□□□□□ -2.25
CD44-239ENST00000639002 KDM5AP29375 1690 aaKnown RBP0.98□□□□□ -2.25
CD44-239ENST00000639002 CELSR2Q9HCU4 2923 aa0.98□□□□□ -2.25
CD44-239ENST00000639002 TRBV6-5A0A0K0K1A5 114 aa0.98□□□□□ -2.25
CD44-239ENST00000639002 TRBV10-3A0A0K0K1G6 114 aa0.98□□□□□ -2.25
CD44-239ENST00000639002 TRBV6-4A0A1B0GX49 114 aa0.98□□□□□ -2.25
CD44-239ENST00000639002 OOSP1A8MZH6 123 aa0.98□□□□□ -2.25
CD44-239ENST00000639002 NUPR1O60356 82 aa0.98□□□□□ -2.25
CD44-239ENST00000639002 PITX3O75364 302 aa0.98□□□□□ -2.25
CD44-239ENST00000639002 DNAL4O96015 105 aa0.98□□□□□ -2.25
CD44-239ENST00000639002 PPYP01298 95 aa0.98□□□□□ -2.25
CD44-239ENST00000639002 SLC25A6P12236 298 aa0.98□□□□□ -2.25
CD44-239ENST00000639002 UBE2G1P62253 170 aa0.98□□□□□ -2.25
CD44-239ENST00000639002 IQCJQ1A5X6 159 aa0.98□□□□□ -2.25
CD44-239ENST00000639002 MPV17LQ2QL34 196 aa0.98□□□□□ -2.25
CD44-239ENST00000639002 C9orf116Q5BN46 136 aaPredicted RBP0.98□□□□□ -2.25
CD44-239ENST00000639002 C5orf38Q86SI9 138 aa0.98□□□□□ -2.25
CD44-239ENST00000639002 PPP1R1CQ8WVI7 109 aa0.98□□□□□ -2.25
CD44-239ENST00000639002 LSM10Q969L4 123 aaKnown RBP0.98□□□□□ -2.25
CD44-239ENST00000639002 DMAC1Q96GE9 116 aa0.98□□□□□ -2.25
CD44-239ENST00000639002 CDC42SE1Q9NRR8 79 aa0.98□□□□□ -2.25
CD44-239ENST00000639002 MRPL35Q9NZE8 188 aaKnown RBP0.98□□□□□ -2.25
CD44-239ENST00000639002 MRPL36Q9P0J6 103 aaKnown RBP0.98□□□□□ -2.25
CD44-239ENST00000639002 ARHGAP5Q13017 1502 aa0.98□□□□□ -2.25
CD44-239ENST00000639002 PARP14Q460N5 1801 aa0.98□□□□□ -2.25
CD44-239ENST00000639002 DMBT1Q9UGM3 2413 aaPredicted RBP0.98□□□□□ -2.25
Retrieved 100 of 20,778 RNA–protein pairs in 153.4 ms