RNA–Protein interactions for RNA: ENST00000632758.1

LIMS4-203, Transcript of LIM zinc finger domain containing 4, humanhuman

TSL 1 (best)

Gene LIMS4, Length 1,580 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS4-203ENST00000632758 NIT2Q9NQR4 276 aa10.33□□□□□ -0.76
LIMS4-203ENST00000632758 GAGE12JA6NER3 117 aa10.32□□□□□ -0.76
LIMS4-203ENST00000632758 TNFRSF6BO95407 300 aa10.32□□□□□ -0.76
LIMS4-203ENST00000632758 TGP01266 2768 aa10.32□□□□□ -0.76
LIMS4-203ENST00000632758 PPBPP02775 128 aa10.32□□□□□ -0.76
LIMS4-203ENST00000632758 GAGE1Q13065 139 aa10.32□□□□□ -0.76
LIMS4-203ENST00000632758 GAGE4Q13068 117 aa10.32□□□□□ -0.76
LIMS4-203ENST00000632758 GAGE5Q13069 117 aa10.32□□□□□ -0.76
LIMS4-203ENST00000632758 RHOHQ15669 191 aa10.32□□□□□ -0.76
LIMS4-203ENST00000632758 GAGE13Q4V321 117 aa10.32□□□□□ -0.76
LIMS4-203ENST00000632758 PRADC1Q9BSG0 188 aa10.32□□□□□ -0.76
LIMS4-203ENST00000632758 ALKBH7Q9BT30 221 aaPredicted RBP10.32□□□□□ -0.76
LIMS4-203ENST00000632758 H7C1H1 209 aa10.31□□□□□ -0.76
LIMS4-203ENST00000632758 GYPEP15421 78 aa10.31□□□□□ -0.76
LIMS4-203ENST00000632758 SRIP30626 198 aa10.31□□□□□ -0.76
LIMS4-203ENST00000632758 OR10J3Q5JRS4 329 aa10.31□□□□□ -0.76
LIMS4-203ENST00000632758 ZNRF2Q8NHG8 242 aa10.31□□□□□ -0.76
LIMS4-203ENST00000632758 TRBV10-1A0A0K0K1A3 114 aa10.31□□□□□ -0.76
LIMS4-203ENST00000632758 DNAH7Q8WXX0 4024 aa10.3□□□□□ -0.76
LIMS4-203ENST00000632758 DEFB104AQ8WTQ1 72 aa10.3□□□□□ -0.76
LIMS4-203ENST00000632758 TNFRSF18Q9Y5U5 241 aa10.3□□□□□ -0.76
LIMS4-203ENST00000632758 A0A096LPF7 62 aa10.29□□□□□ -0.76
LIMS4-203ENST00000632758 LOC389332A0A1B0GUA5 103 aa10.29□□□□□ -0.76
LIMS4-203ENST00000632758 RPL36AP83881 106 aaKnown RBP10.29□□□□□ -0.76
LIMS4-203ENST00000632758 NEGR1Q7Z3B1 354 aa10.29□□□□□ -0.76
LIMS4-203ENST00000632758 RPL36ALQ969Q0 106 aaKnown RBP10.29□□□□□ -0.76
LIMS4-203ENST00000632758 DNAJC30Q96LL9 226 aa10.29□□□□□ -0.76
LIMS4-203ENST00000632758 ST20Q9HBF5 79 aa10.29□□□□□ -0.76
LIMS4-203ENST00000632758 DYNC2H1Q8NCM8 4307 aaKnown RBP10.28□□□□□ -0.76
LIMS4-203ENST00000632758 TRBV7-3A0A075B6L6 115 aa10.28□□□□□ -0.76
LIMS4-203ENST00000632758 IGHV3-38A0A0C4DH36 116 aa10.28□□□□□ -0.76
LIMS4-203ENST00000632758 TRBV6-5A0A0K0K1A5 114 aa10.28□□□□□ -0.76
LIMS4-203ENST00000632758 IGLL5B9A064 214 aa10.28□□□□□ -0.76
LIMS4-203ENST00000632758 IQCJQ1A5X6 159 aa10.28□□□□□ -0.76
LIMS4-203ENST00000632758 SDHAF1A6NFY7 115 aa10.27□□□□□ -0.76
LIMS4-203ENST00000632758 LINC00694P0DN24 101 aa10.27□□□□□ -0.76
LIMS4-203ENST00000632758 POLR2KP53803 58 aaKnown RBP10.27□□□□□ -0.76
LIMS4-203ENST00000632758 UBE2D3P61077 147 aa10.27□□□□□ -0.76
LIMS4-203ENST00000632758 SUMO2P61956 95 aaKnown RBP10.27□□□□□ -0.76
LIMS4-203ENST00000632758 UBE2D2P62837 147 aa10.27□□□□□ -0.76
LIMS4-203ENST00000632758 CEMP1Q6PRD7 247 aaPredicted RBP10.27□□□□□ -0.76
LIMS4-203ENST00000632758 TMEM70Q9BUB7 260 aa10.27□□□□□ -0.76
LIMS4-203ENST00000632758 H3BNG1 76 aa10.26□□□□□ -0.77
LIMS4-203ENST00000632758 NUDT3O95989 172 aa10.26□□□□□ -0.77
LIMS4-203ENST00000632758 PPP1R17O96001 155 aa10.26□□□□□ -0.77
LIMS4-203ENST00000632758 ZFAND6Q6FIF0 208 aa10.26□□□□□ -0.77
LIMS4-203ENST00000632758 C18orf32Q8TCD1 76 aa10.26□□□□□ -0.77
LIMS4-203ENST00000632758 WWC2-AS2Q96NR7 200 aa10.26□□□□□ -0.77
LIMS4-203ENST00000632758 C20orf78Q9BR46 151 aa10.26□□□□□ -0.77
LIMS4-203ENST00000632758 LAMTOR2Q9Y2Q5 125 aa10.26□□□□□ -0.77
LIMS4-203ENST00000632758 MRPL23Q16540 153 aaKnown RBP10.26□□□□□ -0.77
LIMS4-203ENST00000632758 ICOSQ9Y6W8 199 aa10.26□□□□□ -0.77
LIMS4-203ENST00000632758 PRSS47A8MTI9 375 aa10.25□□□□□ -0.77
LIMS4-203ENST00000632758 C1orf196B1AJZ1 125 aa10.25□□□□□ -0.77
LIMS4-203ENST00000632758 HIST1H2BKO60814 126 aa10.25□□□□□ -0.77
LIMS4-203ENST00000632758 HIST1H2BJP06899 126 aa10.25□□□□□ -0.77
LIMS4-203ENST00000632758 HIST1H2BOP23527 126 aa10.25□□□□□ -0.77
LIMS4-203ENST00000632758 HIST1H2BBP33778 126 aa10.25□□□□□ -0.77
LIMS4-203ENST00000632758 IFI27P40305 119 aaPredicted RBP10.25□□□□□ -0.77
LIMS4-203ENST00000632758 HIST1H2BDP58876 126 aa10.25□□□□□ -0.77
LIMS4-203ENST00000632758 HIST1H2BCP62807 126 aa10.25□□□□□ -0.77
LIMS4-203ENST00000632758 HIST2H2BEQ16778 126 aa10.25□□□□□ -0.77
LIMS4-203ENST00000632758 HIST2H2BFQ5QNW6 126 aaPredicted RBP10.25□□□□□ -0.77
LIMS4-203ENST00000632758 ATP6V0E2Q8NHE4 81 aa10.25□□□□□ -0.77
LIMS4-203ENST00000632758 HIST1H2BHQ93079 126 aa10.25□□□□□ -0.77
LIMS4-203ENST00000632758 HIST1H2BNQ99877 126 aa10.25□□□□□ -0.77
LIMS4-203ENST00000632758 HIST1H2BMQ99879 126 aa10.25□□□□□ -0.77
LIMS4-203ENST00000632758 MAP1LC3AQ9H492 121 aa10.25□□□□□ -0.77
LIMS4-203ENST00000632758 STARD9Q9P2P6 4700 aa10.25□□□□□ -0.77
LIMS4-203ENST00000632758 PLECQ15149 4684 aaKnown RBP10.24□□□□□ -0.77
LIMS4-203ENST00000632758 IGLV2-18A0A075B6J9 118 aa10.24□□□□□ -0.77
LIMS4-203ENST00000632758 MUC7Q8TAX7 377 aa10.24□□□□□ -0.77
LIMS4-203ENST00000632758 SMIM2Q9BVW6 85 aa10.24□□□□□ -0.77
LIMS4-203ENST00000632758 TRBV27A0A0K0K1C4 114 aa10.23□□□□□ -0.77
LIMS4-203ENST00000632758 VCYO14598 125 aa10.23□□□□□ -0.77
LIMS4-203ENST00000632758 PMCHP20382 165 aa10.23□□□□□ -0.77
LIMS4-203ENST00000632758 URB1-AS1Q96HZ7 61 aa10.23□□□□□ -0.77
LIMS4-203ENST00000632758 CSMD3Q7Z407 3707 aa10.23□□□□□ -0.77
LIMS4-203ENST00000632758 NUPR2A6NF83 97 aa10.22□□□□□ -0.77
LIMS4-203ENST00000632758 I3L3M4 83 aa10.22□□□□□ -0.77
LIMS4-203ENST00000632758 TCAPO15273 167 aa10.22□□□□□ -0.77
LIMS4-203ENST00000632758 PRSS3P2Q8NHM4 247 aa10.22□□□□□ -0.77
LIMS4-203ENST00000632758 RPL32P62910 135 aaKnown RBP10.22□□□□□ -0.77
LIMS4-203ENST00000632758 Q0VG73 95 aa10.22□□□□□ -0.77
LIMS4-203ENST00000632758 NTM-AS1Q6ZSK4 140 aa10.22□□□□□ -0.77
LIMS4-203ENST00000632758 DAZ4Q86SG3 579 aaKnown RBP10.22□□□□□ -0.77
LIMS4-203ENST00000632758 NIT1Q86X76 327 aa10.22□□□□□ -0.77
LIMS4-203ENST00000632758 Q8N8P6 123 aa10.22□□□□□ -0.77
LIMS4-203ENST00000632758 C15orf53Q8NAA6 179 aa10.22□□□□□ -0.77
LIMS4-203ENST00000632758 DAZ3Q9NR90 486 aaKnown RBP10.22□□□□□ -0.77
LIMS4-203ENST00000632758 APLNQ9ULZ1 77 aa10.22□□□□□ -0.77
LIMS4-203ENST00000632758 TSHBP01222 138 aa10.21□□□□□ -0.78
LIMS4-203ENST00000632758 LYPD5Q6UWN5 251 aa10.21□□□□□ -0.78
LIMS4-203ENST00000632758 KLK5Q9Y337 293 aaPredicted RBP10.21□□□□□ -0.78
LIMS4-203ENST00000632758 ESRGQ1W209 222 aa10.2□□□□□ -0.78
LIMS4-203ENST00000632758 BAGE3Q86Y29 109 aa10.2□□□□□ -0.78
LIMS4-203ENST00000632758 GTSF1LQ9H1H1 148 aa10.2□□□□□ -0.78
LIMS4-203ENST00000632758 NXT2Q9NPJ8 142 aaKnown RBP10.2□□□□□ -0.78
LIMS4-203ENST00000632758 LINC00614P0C842 121 aa10.19□□□□□ -0.78
LIMS4-203ENST00000632758 RAB5BP61020 215 aa10.19□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms