RNA–Protein interactions for RNA: ENST00000597172.5

TRIM28-208, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 577 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-208ENST00000597172 SMIM17P0DL12 118 aa6.62□□□□□ -1.35
TRIM28-208ENST00000597172 HOXA5P20719 270 aa6.62□□□□□ -1.35
TRIM28-208ENST00000597172 COX19Q49B96 90 aa6.62□□□□□ -1.35
TRIM28-208ENST00000597172 SMIM15Q7Z3B0 74 aa6.62□□□□□ -1.35
TRIM28-208ENST00000597172 C11orf45Q8TAV5 145 aa6.62□□□□□ -1.35
TRIM28-208ENST00000597172 Q9UF83 564 aa6.62□□□□□ -1.35
TRIM28-208ENST00000597172 TRAPPC1Q9Y5R8 145 aa6.62□□□□□ -1.35
TRIM28-208ENST00000597172 MYCBP2O75592 4640 aa6.61□□□□□ -1.35
TRIM28-208ENST00000597172 DNAH5Q8TE73 4624 aa6.61□□□□□ -1.35
TRIM28-208ENST00000597172 TRAV26-2A0A0B4J265 109 aa6.61□□□□□ -1.35
TRIM28-208ENST00000597172 PRSS29PA6NIE9 313 aa6.61□□□□□ -1.35
TRIM28-208ENST00000597172 SMKR1H3BMG3 65 aa6.61□□□□□ -1.35
TRIM28-208ENST00000597172 PHOX2AO14813 284 aa6.61□□□□□ -1.35
TRIM28-208ENST00000597172 CIDEAO60543 219 aa6.61□□□□□ -1.35
TRIM28-208ENST00000597172 HLA-DQA1P01909 254 aa6.61□□□□□ -1.35
TRIM28-208ENST00000597172 APCSP02743 223 aa6.61□□□□□ -1.35
TRIM28-208ENST00000597172 MGPP08493 103 aa6.61□□□□□ -1.35
TRIM28-208ENST00000597172 GATA1P15976 413 aaPredicted RBP6.61□□□□□ -1.35
TRIM28-208ENST00000597172 RPS10P46783 165 aaKnown RBP6.61□□□□□ -1.35
TRIM28-208ENST00000597172 FABP9Q0Z7S8 132 aa6.61□□□□□ -1.35
TRIM28-208ENST00000597172 KIAA1644Q3SXP7 199 aa6.61□□□□□ -1.35
TRIM28-208ENST00000597172 SUMO4Q6EEV6 95 aa6.61□□□□□ -1.35
TRIM28-208ENST00000597172 Q6ZTC4 211 aa6.61□□□□□ -1.35
TRIM28-208ENST00000597172 MRPL18Q9H0U6 180 aaKnown RBP6.61□□□□□ -1.35
TRIM28-208ENST00000597172 F5H697 171 aa6.6□□□□□ -1.35
TRIM28-208ENST00000597172 M0QY20 66 aa6.6□□□□□ -1.35
TRIM28-208ENST00000597172 RHODO00212 210 aa6.6□□□□□ -1.35
TRIM28-208ENST00000597172 CDK2AP2O75956 126 aa6.6□□□□□ -1.35
TRIM28-208ENST00000597172 MT-ND6P03923 174 aa6.6□□□□□ -1.35
TRIM28-208ENST00000597172 TRGC2P03986 189 aa6.6□□□□□ -1.35
TRIM28-208ENST00000597172 ATP5G1P05496 136 aa6.6□□□□□ -1.35
TRIM28-208ENST00000597172 P0DMU3 169 aa6.6□□□□□ -1.35
TRIM28-208ENST00000597172 FAM231AP0DMU4 169 aa6.6□□□□□ -1.35
TRIM28-208ENST00000597172 FAM231CP0DMU5 169 aa6.6□□□□□ -1.35
TRIM28-208ENST00000597172 SLC25A29Q8N8R3 303 aa6.6□□□□□ -1.35
TRIM28-208ENST00000597172 SREK1IP1Q8N9Q2 155 aaPredicted RBP6.6□□□□□ -1.35
TRIM28-208ENST00000597172 NACAE9PAV3 2078 aa6.6□□□□□ -1.35
TRIM28-208ENST00000597172 TRGV4A0A0C4DH28 118 aa6.59□□□□□ -1.35
TRIM28-208ENST00000597172 NCR2O95944 276 aa6.59□□□□□ -1.35
TRIM28-208ENST00000597172 CRYBA4P53673 196 aa6.59□□□□□ -1.35
TRIM28-208ENST00000597172 ZNF56Q15929 161 aa6.59□□□□□ -1.35
TRIM28-208ENST00000597172 NRACQ8N912 160 aa6.59□□□□□ -1.35
TRIM28-208ENST00000597172 FRZBQ92765 325 aa6.59□□□□□ -1.35
TRIM28-208ENST00000597172 HHLA3Q9XRX5 114 aa6.59□□□□□ -1.35
TRIM28-208ENST00000597172 TRBV6-4A0A1B0GX49 114 aa6.58□□□□□ -1.36
TRIM28-208ENST00000597172 D6R8Y8 96 aa6.58□□□□□ -1.36
TRIM28-208ENST00000597172 F5H768 121 aa6.58□□□□□ -1.36
TRIM28-208ENST00000597172 HTN3P15516 51 aa6.58□□□□□ -1.36
TRIM28-208ENST00000597172 CKS2P33552 79 aa6.58□□□□□ -1.36
TRIM28-208ENST00000597172 RPL39LQ96EH5 51 aaKnown RBP6.58□□□□□ -1.36
TRIM28-208ENST00000597172 MRAP2Q96G30 205 aa6.58□□□□□ -1.36
TRIM28-208ENST00000597172 VSIG2Q96IQ7 327 aa6.58□□□□□ -1.36
TRIM28-208ENST00000597172 ALKBH7Q9BT30 221 aaPredicted RBP6.58□□□□□ -1.36
TRIM28-208ENST00000597172 DEFB131BA0A096LNP1 70 aa6.57□□□□□ -1.36
TRIM28-208ENST00000597172 LOC100131303A0A0U1RQF7 123 aa6.57□□□□□ -1.36
TRIM28-208ENST00000597172 K7EQD1 137 aa6.57□□□□□ -1.36
TRIM28-208ENST00000597172 PPBPP02775 128 aa6.57□□□□□ -1.36
TRIM28-208ENST00000597172 ORMDL3Q8N138 153 aa6.57□□□□□ -1.36
TRIM28-208ENST00000597172 NEXN-AS1Q8NBZ9 246 aa6.57□□□□□ -1.36
TRIM28-208ENST00000597172 PRELID3AQ96N28 172 aa6.57□□□□□ -1.36
TRIM28-208ENST00000597172 PRO0255Q9UI72 69 aa6.57□□□□□ -1.36
TRIM28-208ENST00000597172 TRAV26-1A0A087WT03 109 aa6.56□□□□□ -1.36
TRIM28-208ENST00000597172 TRAV10A0A0B4J240 114 aa6.56□□□□□ -1.36
TRIM28-208ENST00000597172 A0A0J9YY99 117 aa6.56□□□□□ -1.36
TRIM28-208ENST00000597172 PAX4O43316 350 aa6.56□□□□□ -1.36
TRIM28-208ENST00000597172 TNFRSF6BO95407 300 aa6.56□□□□□ -1.36
TRIM28-208ENST00000597172 NPYP01303 97 aa6.56□□□□□ -1.36
TRIM28-208ENST00000597172 SRIP30626 198 aa6.56□□□□□ -1.36
TRIM28-208ENST00000597172 NIT2Q9NQR4 276 aa6.56□□□□□ -1.36
TRIM28-208ENST00000597172 HMCN2Q8NDA2 5059 aa6.55□□□□□ -1.36
TRIM28-208ENST00000597172 TRBV10-1A0A0K0K1A3 114 aa6.55□□□□□ -1.36
TRIM28-208ENST00000597172 TRBV6-5A0A0K0K1A5 114 aa6.55□□□□□ -1.36
TRIM28-208ENST00000597172 PRSS47A8MTI9 375 aa6.55□□□□□ -1.36
TRIM28-208ENST00000597172 H7C1H1 209 aa6.55□□□□□ -1.36
TRIM28-208ENST00000597172 POLR2KP53803 58 aaKnown RBP6.55□□□□□ -1.36
TRIM28-208ENST00000597172 RHOHQ15669 191 aa6.55□□□□□ -1.36
TRIM28-208ENST00000597172 OR10J3Q5JRS4 329 aa6.55□□□□□ -1.36
TRIM28-208ENST00000597172 ZNRF2Q8NHG8 242 aa6.55□□□□□ -1.36
TRIM28-208ENST00000597172 PHLDA1Q8WV24 401 aaPredicted RBP6.55□□□□□ -1.36
TRIM28-208ENST00000597172 PRADC1Q9BSG0 188 aa6.55□□□□□ -1.36
TRIM28-208ENST00000597172 TRBV7-3A0A075B6L6 115 aa6.54□□□□□ -1.36
TRIM28-208ENST00000597172 GAGE12JA6NER3 117 aa6.54□□□□□ -1.36
TRIM28-208ENST00000597172 RTL8CO15255 209 aa6.54□□□□□ -1.36
TRIM28-208ENST00000597172 LINC00694P0DN24 101 aa6.54□□□□□ -1.36
TRIM28-208ENST00000597172 GYPEP15421 78 aa6.54□□□□□ -1.36
TRIM28-208ENST00000597172 GAGE1Q13065 139 aa6.54□□□□□ -1.36
TRIM28-208ENST00000597172 GAGE4Q13068 117 aa6.54□□□□□ -1.36
TRIM28-208ENST00000597172 GAGE5Q13069 117 aa6.54□□□□□ -1.36
TRIM28-208ENST00000597172 GAGE13Q4V321 117 aa6.54□□□□□ -1.36
TRIM28-208ENST00000597172 C18orf32Q8TCD1 76 aa6.54□□□□□ -1.36
TRIM28-208ENST00000597172 DNAJC30Q96LL9 226 aa6.54□□□□□ -1.36
TRIM28-208ENST00000597172 LAMTOR2Q9Y2Q5 125 aa6.54□□□□□ -1.36
TRIM28-208ENST00000597172 FAT1Q14517 4588 aa6.54□□□□□ -1.36
TRIM28-208ENST00000597172 IGLV2-18A0A075B6J9 118 aa6.53□□□□□ -1.36
TRIM28-208ENST00000597172 A0A096LPF7 62 aa6.53□□□□□ -1.36
TRIM28-208ENST00000597172 LOC389332A0A1B0GUA5 103 aa6.53□□□□□ -1.36
TRIM28-208ENST00000597172 SDHAF1A6NFY7 115 aa6.53□□□□□ -1.36
TRIM28-208ENST00000597172 H3BNG1 76 aa6.53□□□□□ -1.36
TRIM28-208ENST00000597172 HIST1H2BKO60814 126 aa6.53□□□□□ -1.36
TRIM28-208ENST00000597172 PPP1R17O96001 155 aa6.53□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms