RNA–Protein interactions for RNA: ENST00000597136.1

TRIM28-207, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 1,552 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-207ENST00000597136 SMKR1H3BMG3 65 aa10.46□□□□□ -0.74
TRIM28-207ENST00000597136 GAS8-AS1O95177 125 aa10.46□□□□□ -0.74
TRIM28-207ENST00000597136 KIAA1644Q3SXP7 199 aa10.46□□□□□ -0.74
TRIM28-207ENST00000597136 SLC25A29Q8N8R3 303 aa10.46□□□□□ -0.74
TRIM28-207ENST00000597136 D6R8Y8 96 aa10.45□□□□□ -0.74
TRIM28-207ENST00000597136 TRGC2P03986 189 aa10.45□□□□□ -0.74
TRIM28-207ENST00000597136 CKS2P33552 79 aa10.45□□□□□ -0.74
TRIM28-207ENST00000597136 LINC00476Q8WZB0 136 aa10.45□□□□□ -0.74
TRIM28-207ENST00000597136 VSIG2Q96IQ7 327 aa10.45□□□□□ -0.74
TRIM28-207ENST00000597136 PRO0255Q9UI72 69 aa10.45□□□□□ -0.74
TRIM28-207ENST00000597136 TRBV6-4A0A1B0GX49 114 aa10.44□□□□□ -0.74
TRIM28-207ENST00000597136 K7EQD1 137 aa10.44□□□□□ -0.74
TRIM28-207ENST00000597136 LY6G6CO95867 125 aa10.44□□□□□ -0.74
TRIM28-207ENST00000597136 NCR2O95944 276 aa10.44□□□□□ -0.74
TRIM28-207ENST00000597136 PPBPP02775 128 aa10.44□□□□□ -0.74
TRIM28-207ENST00000597136 P0DMU3 169 aa10.44□□□□□ -0.74
TRIM28-207ENST00000597136 FAM231AP0DMU4 169 aa10.44□□□□□ -0.74
TRIM28-207ENST00000597136 FAM231CP0DMU5 169 aa10.44□□□□□ -0.74
TRIM28-207ENST00000597136 CRYBA4P53673 196 aa10.44□□□□□ -0.74
TRIM28-207ENST00000597136 TCTAP57738 103 aa10.44□□□□□ -0.74
TRIM28-207ENST00000597136 Q9UF83 564 aa10.44□□□□□ -0.74
TRIM28-207ENST00000597136 RYR3Q15413 4870 aa10.44□□□□□ -0.74
TRIM28-207ENST00000597136 H7C1H1 209 aa10.43□□□□□ -0.74
TRIM28-207ENST00000597136 PHOX2AO14813 284 aa10.43□□□□□ -0.74
TRIM28-207ENST00000597136 ORMDL3Q8N138 153 aa10.43□□□□□ -0.74
TRIM28-207ENST00000597136 NUDT3O95989 172 aa10.43□□□□□ -0.74
TRIM28-207ENST00000597136 NRACQ8N912 160 aa10.43□□□□□ -0.74
TRIM28-207ENST00000597136 RPL39LQ96EH5 51 aaKnown RBP10.43□□□□□ -0.74
TRIM28-207ENST00000597136 PRELID3AQ96N28 172 aa10.43□□□□□ -0.74
TRIM28-207ENST00000597136 TRBV10-1A0A0K0K1A3 114 aa10.42□□□□□ -0.74
TRIM28-207ENST00000597136 PAX4O43316 350 aa10.42□□□□□ -0.74
TRIM28-207ENST00000597136 RHOHQ15669 191 aa10.42□□□□□ -0.74
TRIM28-207ENST00000597136 LGALS9CQ6DKI2 356 aa10.42□□□□□ -0.74
TRIM28-207ENST00000597136 PRADC1Q9BSG0 188 aa10.42□□□□□ -0.74
TRIM28-207ENST00000597136 ALKBH7Q9BT30 221 aaPredicted RBP10.42□□□□□ -0.74
TRIM28-207ENST00000597136 NIT2Q9NQR4 276 aa10.42□□□□□ -0.74
TRIM28-207ENST00000597136 RYR2Q92736 4967 aa10.42□□□□□ -0.74
TRIM28-207ENST00000597136 NEXN-AS1Q8NBZ9 246 aa10.41□□□□□ -0.74
TRIM28-207ENST00000597136 LOC100131303A0A0U1RQF7 123 aa10.4□□□□□ -0.74
TRIM28-207ENST00000597136 TNFRSF6BO95407 300 aa10.4□□□□□ -0.74
TRIM28-207ENST00000597136 PPP1R17O96001 155 aa10.4□□□□□ -0.74
TRIM28-207ENST00000597136 NPYP01303 97 aa10.4□□□□□ -0.74
TRIM28-207ENST00000597136 SRIP30626 198 aa10.4□□□□□ -0.74
TRIM28-207ENST00000597136 OR10J3Q5JRS4 329 aa10.4□□□□□ -0.74
TRIM28-207ENST00000597136 LAMTOR2Q9Y2Q5 125 aa10.4□□□□□ -0.74
TRIM28-207ENST00000597136 GYPEP15421 78 aa10.39□□□□□ -0.75
TRIM28-207ENST00000597136 C15orf53Q8NAA6 179 aa10.39□□□□□ -0.75
TRIM28-207ENST00000597136 A0A096LPF7 62 aa10.39□□□□□ -0.75
TRIM28-207ENST00000597136 TRBV6-5A0A0K0K1A5 114 aa10.39□□□□□ -0.75
TRIM28-207ENST00000597136 H3BNG1 76 aa10.39□□□□□ -0.75
TRIM28-207ENST00000597136 ZNRF2Q8NHG8 242 aa10.39□□□□□ -0.75
TRIM28-207ENST00000597136 DNAJC30Q96LL9 226 aa10.39□□□□□ -0.75
TRIM28-207ENST00000597136 TNFRSF18Q9Y5U5 241 aa10.39□□□□□ -0.75
TRIM28-207ENST00000597136 TRBV7-3A0A075B6L6 115 aa10.38□□□□□ -0.75
TRIM28-207ENST00000597136 GAGE12JA6NER3 117 aa10.38□□□□□ -0.75
TRIM28-207ENST00000597136 RPL36AP83881 106 aaKnown RBP10.38□□□□□ -0.75
TRIM28-207ENST00000597136 GAGE1Q13065 139 aa10.38□□□□□ -0.75
TRIM28-207ENST00000597136 GAGE4Q13068 117 aa10.38□□□□□ -0.75
TRIM28-207ENST00000597136 GAGE5Q13069 117 aa10.38□□□□□ -0.75
TRIM28-207ENST00000597136 GAGE13Q4V321 117 aa10.38□□□□□ -0.75
TRIM28-207ENST00000597136 RPL36ALQ969Q0 106 aaKnown RBP10.38□□□□□ -0.75
TRIM28-207ENST00000597136 C20orf78Q9BR46 151 aa10.38□□□□□ -0.75
TRIM28-207ENST00000597136 ST20Q9HBF5 79 aa10.38□□□□□ -0.75
TRIM28-207ENST00000597136 SUMO2P61956 95 aaKnown RBP10.37□□□□□ -0.75
TRIM28-207ENST00000597136 DNAH6Q9C0G6 4158 aa10.37□□□□□ -0.75
TRIM28-207ENST00000597136 SDHAF1A6NFY7 115 aa10.36□□□□□ -0.75
TRIM28-207ENST00000597136 LINC00694P0DN24 101 aa10.36□□□□□ -0.75
TRIM28-207ENST00000597136 TMEM70Q9BUB7 260 aa10.36□□□□□ -0.75
TRIM28-207ENST00000597136 PRSS47A8MTI9 375 aa10.35□□□□□ -0.75
TRIM28-207ENST00000597136 C1orf196B1AJZ1 125 aa10.35□□□□□ -0.75
TRIM28-207ENST00000597136 POLR2KP53803 58 aaKnown RBP10.35□□□□□ -0.75
TRIM28-207ENST00000597136 UBE2D3P61077 147 aa10.35□□□□□ -0.75
TRIM28-207ENST00000597136 UBE2D2P62837 147 aa10.35□□□□□ -0.75
TRIM28-207ENST00000597136 ESRGQ1W209 222 aa10.35□□□□□ -0.75
TRIM28-207ENST00000597136 C18orf32Q8TCD1 76 aa10.35□□□□□ -0.75
TRIM28-207ENST00000597136 MAP1LC3AQ9H492 121 aa10.35□□□□□ -0.75
TRIM28-207ENST00000597136 LOC389332A0A1B0GUA5 103 aa10.35□□□□□ -0.75
TRIM28-207ENST00000597136 HIST1H2BKO60814 126 aa10.35□□□□□ -0.75
TRIM28-207ENST00000597136 HIST1H2BJP06899 126 aa10.35□□□□□ -0.75
TRIM28-207ENST00000597136 HIST1H2BOP23527 126 aa10.35□□□□□ -0.75
TRIM28-207ENST00000597136 HIST1H2BBP33778 126 aa10.35□□□□□ -0.75
TRIM28-207ENST00000597136 HIST1H2BDP58876 126 aa10.35□□□□□ -0.75
TRIM28-207ENST00000597136 HIST1H2BCP62807 126 aa10.35□□□□□ -0.75
TRIM28-207ENST00000597136 RPL32P62910 135 aaKnown RBP10.35□□□□□ -0.75
TRIM28-207ENST00000597136 MRPL23Q16540 153 aaKnown RBP10.35□□□□□ -0.75
TRIM28-207ENST00000597136 HIST2H2BEQ16778 126 aa10.35□□□□□ -0.75
TRIM28-207ENST00000597136 HIST2H2BFQ5QNW6 126 aaPredicted RBP10.35□□□□□ -0.75
TRIM28-207ENST00000597136 HIST1H2BHQ93079 126 aa10.35□□□□□ -0.75
TRIM28-207ENST00000597136 HIST1H2BNQ99877 126 aa10.35□□□□□ -0.75
TRIM28-207ENST00000597136 HIST1H2BMQ99879 126 aa10.35□□□□□ -0.75
TRIM28-207ENST00000597136 LINC00588Q9Y4M8 146 aa10.35□□□□□ -0.75
TRIM28-207ENST00000597136 ICOSQ9Y6W8 199 aa10.35□□□□□ -0.75
TRIM28-207ENST00000597136 TRBV27A0A0K0K1C4 114 aa10.34□□□□□ -0.75
TRIM28-207ENST00000597136 IQCJQ1A5X6 159 aa10.34□□□□□ -0.75
TRIM28-207ENST00000597136 UBE2DNLQ8IWF7 75 aa10.34□□□□□ -0.75
TRIM28-207ENST00000597136 SMIM2Q9BVW6 85 aa10.34□□□□□ -0.75
TRIM28-207ENST00000597136 VCYO14598 125 aa10.33□□□□□ -0.76
TRIM28-207ENST00000597136 NEGR1Q7Z3B1 354 aa10.33□□□□□ -0.76
TRIM28-207ENST00000597136 DAZ4Q86SG3 579 aaKnown RBP10.33□□□□□ -0.76
TRIM28-207ENST00000597136 DAZ3Q9NR90 486 aaKnown RBP10.33□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 159.4 ms