RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 SULT1A1P50225 295 aa9.34□□□□□ -0.91
VPS53-218ENST00000575207 SEC61BP60468 96 aaKnown RBP9.34□□□□□ -0.91
VPS53-218ENST00000575207 SYCNQ0VAF6 134 aa9.34□□□□□ -0.91
VPS53-218ENST00000575207 KHDC3LQ587J8 217 aa9.34□□□□□ -0.91
VPS53-218ENST00000575207 LINC00173Q6ZV60 143 aa9.34□□□□□ -0.91
VPS53-218ENST00000575207 KRTAP11-1Q8IUC1 163 aa9.34□□□□□ -0.91
VPS53-218ENST00000575207 SSBP4Q9BWG4 385 aaPredicted RBP9.34□□□□□ -0.91
VPS53-218ENST00000575207 PSG8Q9UQ74 426 aa9.34□□□□□ -0.91
VPS53-218ENST00000575207 IGKV3OR2-268A0A0C4DH90 116 aa9.33□□□□□ -0.92
VPS53-218ENST00000575207 B4DEV8 164 aa9.33□□□□□ -0.92
VPS53-218ENST00000575207 DNLZQ5SXM8 178 aa9.33□□□□□ -0.92
VPS53-218ENST00000575207 CHCHD10Q8WYQ3 142 aaPredicted RBP9.33□□□□□ -0.92
VPS53-218ENST00000575207 LSM5Q9Y4Y9 91 aaKnown RBP9.33□□□□□ -0.92
VPS53-218ENST00000575207 FGF6P10767 208 aa9.32□□□□□ -0.92
VPS53-218ENST00000575207 TPT1P13693 172 aaKnown RBP9.32□□□□□ -0.92
VPS53-218ENST00000575207 ATP6V1FQ16864 119 aa9.32□□□□□ -0.92
VPS53-218ENST00000575207 ZFP82Q8N141 532 aa9.32□□□□□ -0.92
VPS53-218ENST00000575207 OR5C1Q8NGR4 320 aa9.32□□□□□ -0.92
VPS53-218ENST00000575207 THAP6Q8TBB0 222 aa9.32□□□□□ -0.92
VPS53-218ENST00000575207 FUNDC2Q9BWH2 189 aa9.32□□□□□ -0.92
VPS53-218ENST00000575207 A0A087X002 238 aa9.31□□□□□ -0.92
VPS53-218ENST00000575207 CTDSP2O14595 271 aa9.31□□□□□ -0.92
VPS53-218ENST00000575207 TAS2R45P59539 299 aa9.31□□□□□ -0.92
VPS53-218ENST00000575207 PRNTQ86SH4 94 aa9.31□□□□□ -0.92
VPS53-218ENST00000575207 STX12Q86Y82 276 aa9.31□□□□□ -0.92
VPS53-218ENST00000575207 TYMSOSQ8TAI1 123 aa9.31□□□□□ -0.92
VPS53-218ENST00000575207 TSKUQ8WUA8 353 aa9.31□□□□□ -0.92
VPS53-218ENST00000575207 TMEM243Q9BU79 118 aa9.31□□□□□ -0.92
VPS53-218ENST00000575207 KCNIP2Q9NS61 270 aa9.31□□□□□ -0.92
VPS53-218ENST00000575207 IGSF23A1L1A6 192 aa9.3□□□□□ -0.92
VPS53-218ENST00000575207 FABP5P3A8MUU1 101 aa9.3□□□□□ -0.92
VPS53-218ENST00000575207 K7EQM0 130 aa9.3□□□□□ -0.92
VPS53-218ENST00000575207 FLI1Q01543 452 aaPredicted RBP9.3□□□□□ -0.92
VPS53-218ENST00000575207 NAA50Q9GZZ1 169 aaKnown RBP9.3□□□□□ -0.92
VPS53-218ENST00000575207 GRIFINA4D1Z8 144 aa9.29□□□□□ -0.92
VPS53-218ENST00000575207 TCRAP04437 139 aa9.29□□□□□ -0.92
VPS53-218ENST00000575207 BCL2P10415 239 aa9.29□□□□□ -0.92
VPS53-218ENST00000575207 SDHCQ99643 169 aaPredicted RBP9.29□□□□□ -0.92
VPS53-218ENST00000575207 MRPS26Q9BYN8 205 aaKnown RBP9.29□□□□□ -0.92
VPS53-218ENST00000575207 C11orf1Q9H5F2 150 aa9.29□□□□□ -0.92
VPS53-218ENST00000575207 RSL24D1Q9UHA3 163 aaKnown RBP9.29□□□□□ -0.92
VPS53-218ENST00000575207 SAPCD1Q5SSQ6 148 aa9.28□□□□□ -0.92
VPS53-218ENST00000575207 TMEM252Q8N6L7 170 aa9.28□□□□□ -0.92
VPS53-218ENST00000575207 IGHV1-58A0A0C4DH39 117 aa9.27□□□□□ -0.93
VPS53-218ENST00000575207 KRBOX1C9JBD0 128 aa9.27□□□□□ -0.93
VPS53-218ENST00000575207 ZNF561-AS1K7EIQ3 104 aa9.27□□□□□ -0.93
VPS53-218ENST00000575207 M0R036 132 aa9.27□□□□□ -0.93
VPS53-218ENST00000575207 FOXI1Q12951 378 aa9.27□□□□□ -0.93
VPS53-218ENST00000575207 EIF5AL1Q6IS14 154 aaKnown RBP9.27□□□□□ -0.93
VPS53-218ENST00000575207 LINC00337Q8N6G1 96 aa9.27□□□□□ -0.93
VPS53-218ENST00000575207 F5H697 171 aa9.26□□□□□ -0.93
VPS53-218ENST00000575207 UBE2L6O14933 153 aa9.26□□□□□ -0.93
VPS53-218ENST00000575207 PVALBP20472 110 aaPredicted RBP9.26□□□□□ -0.93
VPS53-218ENST00000575207 AP3S2P59780 193 aa9.26□□□□□ -0.93
VPS53-218ENST00000575207 C5orf17Q8NAS9 161 aa9.26□□□□□ -0.93
VPS53-218ENST00000575207 ISOC2Q96AB3 205 aa9.25□□□□□ -0.93
VPS53-218ENST00000575207 APOMO95445 188 aa9.24□□□□□ -0.93
VPS53-218ENST00000575207 CAMPP49913 170 aa9.24□□□□□ -0.93
VPS53-218ENST00000575207 TMBIM6P55061 237 aa9.24□□□□□ -0.93
VPS53-218ENST00000575207 CTAG1AP78358 180 aa9.24□□□□□ -0.93
VPS53-218ENST00000575207 RPL18AQ02543 176 aaKnown RBP9.24□□□□□ -0.93
VPS53-218ENST00000575207 KRTAP13-3Q3SY46 172 aa9.24□□□□□ -0.93
VPS53-218ENST00000575207 TOMM5Q8N4H5 51 aa9.24□□□□□ -0.93
VPS53-218ENST00000575207 FLGP20930 4061 aaPredicted RBP9.23□□□□□ -0.93
VPS53-218ENST00000575207 C17orf112F2Z3M2 114 aa9.22□□□□□ -0.93
VPS53-218ENST00000575207 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP9.22□□□□□ -0.93
VPS53-218ENST00000575207 TSHBP01222 138 aa9.22□□□□□ -0.93
VPS53-218ENST00000575207 MEF2BQ02080 365 aaPredicted RBP9.22□□□□□ -0.93
VPS53-218ENST00000575207 PQLC2Q6ZP29 291 aa9.22□□□□□ -0.93
VPS53-218ENST00000575207 LINC00304Q8N9R0 145 aa9.21□□□□□ -0.94
VPS53-218ENST00000575207 WDR61Q9GZS3 305 aaKnown RBP9.21□□□□□ -0.94
VPS53-218ENST00000575207 MED28Q9H204 178 aa9.21□□□□□ -0.94
VPS53-218ENST00000575207 FLVCR2Q9UPI3 526 aa9.21□□□□□ -0.94
VPS53-218ENST00000575207 IGLV4-69A0A075B6H9 119 aa9.2□□□□□ -0.94
VPS53-218ENST00000575207 M0R2T5 61 aa9.2□□□□□ -0.94
VPS53-218ENST00000575207 ZNF861PO60384 105 aa9.2□□□□□ -0.94
VPS53-218ENST00000575207 XCL1P47992 114 aa9.2□□□□□ -0.94
VPS53-218ENST00000575207 NUP35Q8NFH5 326 aa9.2□□□□□ -0.94
VPS53-218ENST00000575207 ARL2-SNX15V9GYD0 113 aa9.2□□□□□ -0.94
VPS53-218ENST00000575207 TMSB15BA0A087X1C1 80 aa9.19□□□□□ -0.94
VPS53-218ENST00000575207 H3BMQ9 156 aa9.19□□□□□ -0.94
VPS53-218ENST00000575207 RPL12P30050 165 aaKnown RBP9.19□□□□□ -0.94
VPS53-218ENST00000575207 FAM168BA1KXE4 195 aa9.18□□□□□ -0.94
VPS53-218ENST00000575207 FAM25EA8MYX2 175 aa9.18□□□□□ -0.94
VPS53-218ENST00000575207 NOL3O60936 208 aaKnown RBP9.18□□□□□ -0.94
VPS53-218ENST00000575207 NEBP20929 6669 aa9.18□□□□□ -0.94
VPS53-218ENST00000575207 CRIP1P50238 77 aa9.18□□□□□ -0.94
VPS53-218ENST00000575207 UBE2BP63146 152 aa9.18□□□□□ -0.94
VPS53-218ENST00000575207 NHLH2Q02577 135 aa9.18□□□□□ -0.94
VPS53-218ENST00000575207 KRTAP19-1Q8IUB9 90 aa9.18□□□□□ -0.94
VPS53-218ENST00000575207 DEDD2Q8WXF8 326 aa9.18□□□□□ -0.94
VPS53-218ENST00000575207 EPDR1Q9UM22 224 aa9.18□□□□□ -0.94
VPS53-218ENST00000575207 SH2D1AO60880 128 aa9.17□□□□□ -0.94
VPS53-218ENST00000575207 FP248Q71RG6 208 aaPredicted RBP9.17□□□□□ -0.94
VPS53-218ENST00000575207 FAM19A5Q7Z5A7 132 aaPredicted RBP9.16□□□□□ -0.94
VPS53-218ENST00000575207 OR5A1Q8NGJ0 315 aa9.16□□□□□ -0.94
VPS53-218ENST00000575207 OR10AG1Q8NH19 301 aa9.16□□□□□ -0.94
VPS53-218ENST00000575207 PGLYRP4Q96LB8 373 aa9.16□□□□□ -0.94
VPS53-218ENST00000575207 CAMK2N2Q96S95 79 aa9.16□□□□□ -0.94
VPS53-218ENST00000575207 ZNF471Q9BX82 626 aaPredicted RBP9.16□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 129.4 ms