RNA–Protein interactions for RNA: ENST00000562754.1

VPS4A-202, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 2

Gene VPS4A, Length 633 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-202ENST00000562754 FRZBQ92765 325 aa11.56□□□□□ -0.56
VPS4A-202ENST00000562754 DYNC2H1Q8NCM8 4307 aaKnown RBP11.55□□□□□ -0.56
VPS4A-202ENST00000562754 TRBV10-1A0A0K0K1A3 114 aa11.55□□□□□ -0.56
VPS4A-202ENST00000562754 H3BNG1 76 aa11.55□□□□□ -0.56
VPS4A-202ENST00000562754 RAB5AP20339 215 aa11.55□□□□□ -0.56
VPS4A-202ENST00000562754 KIAA1644Q3SXP7 199 aa11.55□□□□□ -0.56
VPS4A-202ENST00000562754 TRAPPC1Q9Y5R8 145 aa11.55□□□□□ -0.56
VPS4A-202ENST00000562754 GAGE12JA6NER3 117 aa11.54□□□□□ -0.56
VPS4A-202ENST00000562754 IGLL5B9A064 214 aa11.54□□□□□ -0.56
VPS4A-202ENST00000562754 CKS2P33552 79 aa11.54□□□□□ -0.56
VPS4A-202ENST00000562754 GAGE1Q13065 139 aa11.54□□□□□ -0.56
VPS4A-202ENST00000562754 GAGE4Q13068 117 aa11.54□□□□□ -0.56
VPS4A-202ENST00000562754 GAGE5Q13069 117 aa11.54□□□□□ -0.56
VPS4A-202ENST00000562754 GAGE13Q4V321 117 aa11.54□□□□□ -0.56
VPS4A-202ENST00000562754 A0A096LPF7 62 aa11.53□□□□□ -0.56
VPS4A-202ENST00000562754 NPYP01303 97 aa11.53□□□□□ -0.56
VPS4A-202ENST00000562754 PPBPP02775 128 aa11.53□□□□□ -0.56
VPS4A-202ENST00000562754 FABP9Q0Z7S8 132 aa11.53□□□□□ -0.56
VPS4A-202ENST00000562754 OR10J3Q5JRS4 329 aa11.53□□□□□ -0.56
VPS4A-202ENST00000562754 ORMDL3Q8N138 153 aa11.53□□□□□ -0.56
VPS4A-202ENST00000562754 ZNRF2Q8NHG8 242 aa11.53□□□□□ -0.56
VPS4A-202ENST00000562754 NIT2Q9NQR4 276 aa11.53□□□□□ -0.56
VPS4A-202ENST00000562754 ICOSQ9Y6W8 199 aa11.53□□□□□ -0.56
VPS4A-202ENST00000562754 TRBV6-5A0A0K0K1A5 114 aa11.52□□□□□ -0.57
VPS4A-202ENST00000562754 UBE2D3P61077 147 aa11.52□□□□□ -0.57
VPS4A-202ENST00000562754 UBE2D2P62837 147 aa11.52□□□□□ -0.57
VPS4A-202ENST00000562754 RPL36AP83881 106 aaKnown RBP11.52□□□□□ -0.57
VPS4A-202ENST00000562754 RPL36ALQ969Q0 106 aaKnown RBP11.52□□□□□ -0.57
VPS4A-202ENST00000562754 DNAJC30Q96LL9 226 aa11.52□□□□□ -0.57
VPS4A-202ENST00000562754 PRELID3AQ96N28 172 aa11.52□□□□□ -0.57
VPS4A-202ENST00000562754 TRBV7-3A0A075B6L6 115 aa11.51□□□□□ -0.57
VPS4A-202ENST00000562754 TNFRSF6BO95407 300 aa11.51□□□□□ -0.57
VPS4A-202ENST00000562754 NUDT3O95989 172 aa11.51□□□□□ -0.57
VPS4A-202ENST00000562754 MRPL23Q16540 153 aaKnown RBP11.51□□□□□ -0.57
VPS4A-202ENST00000562754 C15orf53Q8NAA6 179 aa11.51□□□□□ -0.57
VPS4A-202ENST00000562754 KLK5Q9Y337 293 aaPredicted RBP11.51□□□□□ -0.57
VPS4A-202ENST00000562754 CSMD3Q7Z407 3707 aa11.51□□□□□ -0.57
VPS4A-202ENST00000562754 PHOX2AO14813 284 aa11.5□□□□□ -0.57
VPS4A-202ENST00000562754 SRIP30626 198 aa11.5□□□□□ -0.57
VPS4A-202ENST00000562754 SREK1IP1Q8N9Q2 155 aaPredicted RBP11.5□□□□□ -0.57
VPS4A-202ENST00000562754 ALKBH7Q9BT30 221 aaPredicted RBP11.5□□□□□ -0.57
VPS4A-202ENST00000562754 APLNQ9ULZ1 77 aa11.5□□□□□ -0.57
VPS4A-202ENST00000562754 TNFRSF18Q9Y5U5 241 aa11.5□□□□□ -0.57
VPS4A-202ENST00000562754 TRGC2P03986 189 aa11.49□□□□□ -0.57
VPS4A-202ENST00000562754 IGHV3-38A0A0C4DH36 116 aa11.48□□□□□ -0.57
VPS4A-202ENST00000562754 SDHAF1A6NFY7 115 aa11.48□□□□□ -0.57
VPS4A-202ENST00000562754 PPP1R17O96001 155 aa11.48□□□□□ -0.57
VPS4A-202ENST00000562754 SUMO2P61956 95 aaKnown RBP11.48□□□□□ -0.57
VPS4A-202ENST00000562754 NEGR1Q7Z3B1 354 aa11.48□□□□□ -0.57
VPS4A-202ENST00000562754 ATP6V0E2Q8NHE4 81 aa11.48□□□□□ -0.57
VPS4A-202ENST00000562754 TMEM70Q9BUB7 260 aa11.48□□□□□ -0.57
VPS4A-202ENST00000562754 ST20Q9HBF5 79 aa11.48□□□□□ -0.57
VPS4A-202ENST00000562754 LAMTOR2Q9Y2Q5 125 aa11.48□□□□□ -0.57
VPS4A-202ENST00000562754 STARD9Q9P2P6 4700 aa11.48□□□□□ -0.57
VPS4A-202ENST00000562754 C3orf84H3BNL1 204 aa11.47□□□□□ -0.57
VPS4A-202ENST00000562754 POLR2KP53803 58 aaKnown RBP11.47□□□□□ -0.57
VPS4A-202ENST00000562754 CASC10Q5T4H9 136 aa11.47□□□□□ -0.57
VPS4A-202ENST00000562754 C20orf78Q9BR46 151 aa11.47□□□□□ -0.57
VPS4A-202ENST00000562754 SMIM2Q9BVW6 85 aa11.46□□□□□ -0.57
VPS4A-202ENST00000562754 RPL32P62910 135 aaKnown RBP11.45□□□□□ -0.58
VPS4A-202ENST00000562754 SH2D6Q7Z4S9 175 aa11.45□□□□□ -0.58
VPS4A-202ENST00000562754 DAZ4Q86SG3 579 aaKnown RBP11.45□□□□□ -0.58
VPS4A-202ENST00000562754 DEFB104AQ8WTQ1 72 aa11.45□□□□□ -0.58
VPS4A-202ENST00000562754 MAP1LC3AQ9H492 121 aa11.45□□□□□ -0.58
VPS4A-202ENST00000562754 DAZ3Q9NR90 486 aaKnown RBP11.45□□□□□ -0.58
VPS4A-202ENST00000562754 TRBV27A0A0K0K1C4 114 aa11.44□□□□□ -0.58
VPS4A-202ENST00000562754 PRSS47A8MTI9 375 aa11.44□□□□□ -0.58
VPS4A-202ENST00000562754 TCTAP57738 103 aa11.44□□□□□ -0.58
VPS4A-202ENST00000562754 IQCJQ1A5X6 159 aa11.44□□□□□ -0.58
VPS4A-202ENST00000562754 GTSF1LQ9H1H1 148 aa11.44□□□□□ -0.58
VPS4A-202ENST00000562754 IGLV2-18A0A075B6J9 118 aa11.43□□□□□ -0.58
VPS4A-202ENST00000562754 LOC389332A0A1B0GUA5 103 aa11.43□□□□□ -0.58
VPS4A-202ENST00000562754 TSHBP01222 138 aa11.43□□□□□ -0.58
VPS4A-202ENST00000562754 ESRGQ1W209 222 aa11.43□□□□□ -0.58
VPS4A-202ENST00000562754 LYPD5Q6UWN5 251 aa11.43□□□□□ -0.58
VPS4A-202ENST00000562754 C18orf32Q8TCD1 76 aa11.43□□□□□ -0.58
VPS4A-202ENST00000562754 TENM2Q9NT68 2774 aa11.43□□□□□ -0.58
VPS4A-202ENST00000562754 I3L3M4 83 aa11.42□□□□□ -0.58
VPS4A-202ENST00000562754 TIRAPP58753 221 aa11.42□□□□□ -0.58
VPS4A-202ENST00000562754 NTM-AS1Q6ZSK4 140 aa11.42□□□□□ -0.58
VPS4A-202ENST00000562754 VCYO14598 125 aa11.41□□□□□ -0.58
VPS4A-202ENST00000562754 PMCHP20382 165 aa11.41□□□□□ -0.58
VPS4A-202ENST00000562754 IFI27P40305 119 aaPredicted RBP11.4□□□□□ -0.58
VPS4A-202ENST00000562754 COTL1Q14019 142 aa11.4□□□□□ -0.58
VPS4A-202ENST00000562754 Q8N8P6 123 aa11.4□□□□□ -0.58
VPS4A-202ENST00000562754 LINC00588Q9Y4M8 146 aa11.4□□□□□ -0.58
VPS4A-202ENST00000562754 PLECQ15149 4684 aaKnown RBP11.39□□□□□ -0.59
VPS4A-202ENST00000562754 TRBV6-8A0A0A6YYG3 113 aa11.39□□□□□ -0.59
VPS4A-202ENST00000562754 TCAPO15273 167 aa11.39□□□□□ -0.59
VPS4A-202ENST00000562754 LELP1Q5T871 98 aa11.39□□□□□ -0.59
VPS4A-202ENST00000562754 URB1-AS1Q96HZ7 61 aa11.39□□□□□ -0.59
VPS4A-202ENST00000562754 HIST1H2BKO60814 126 aa11.38□□□□□ -0.59
VPS4A-202ENST00000562754 HIST1H2BJP06899 126 aa11.38□□□□□ -0.59
VPS4A-202ENST00000562754 HIST1H2BOP23527 126 aa11.38□□□□□ -0.59
VPS4A-202ENST00000562754 HIST1H2BBP33778 126 aa11.38□□□□□ -0.59
VPS4A-202ENST00000562754 HIST1H2BDP58876 126 aa11.38□□□□□ -0.59
VPS4A-202ENST00000562754 HIST1H2BCP62807 126 aa11.38□□□□□ -0.59
VPS4A-202ENST00000562754 HIST2H2BEQ16778 126 aa11.38□□□□□ -0.59
VPS4A-202ENST00000562754 TMEM97Q5BJF2 176 aa11.38□□□□□ -0.59
VPS4A-202ENST00000562754 HIST2H2BFQ5QNW6 126 aaPredicted RBP11.38□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 69.3 ms