RNA–Protein interactions for RNA: ENST00000560519.1

HERC1-209, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase family member 1, humanhuman

TSL 3

Gene HERC1, Length 591 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC1-209ENST00000560519 GAGE4Q13068 117 aa6.32□□□□□ -1.4
HERC1-209ENST00000560519 GAGE5Q13069 117 aa6.32□□□□□ -1.4
HERC1-209ENST00000560519 GAGE13Q4V321 117 aa6.32□□□□□ -1.4
HERC1-209ENST00000560519 FAM74A3Q4VXF1 159 aa6.32□□□□□ -1.4
HERC1-209ENST00000560519 CIRBP-AS1Q8TBR5 109 aa6.32□□□□□ -1.4
HERC1-209ENST00000560519 BAALCQ8WXS3 180 aa6.32□□□□□ -1.4
HERC1-209ENST00000560519 SMIM7Q9BQ49 75 aa6.32□□□□□ -1.4
HERC1-209ENST00000560519 DNAH8Q96JB1 4490 aa6.32□□□□□ -1.4
HERC1-209ENST00000560519 HMCN2Q8NDA2 5059 aa6.31□□□□□ -1.4
HERC1-209ENST00000560519 TRBV20OR9-2A0A075B6H5 130 aa6.31□□□□□ -1.4
HERC1-209ENST00000560519 A0A087WX48 190 aa6.31□□□□□ -1.4
HERC1-209ENST00000560519 XKRY2A2RUG3 117 aa6.31□□□□□ -1.4
HERC1-209ENST00000560519 PGPEP1LA6NFU8 196 aa6.31□□□□□ -1.4
HERC1-209ENST00000560519 ZNF727A8MUV8 499 aa6.31□□□□□ -1.4
HERC1-209ENST00000560519 P01737 135 aa6.31□□□□□ -1.4
HERC1-209ENST00000560519 CXCL1P09341 107 aa6.31□□□□□ -1.4
HERC1-209ENST00000560519 RPS20P60866 119 aaKnown RBP6.31□□□□□ -1.4
HERC1-209ENST00000560519 RPL37AP61513 92 aaKnown RBP6.31□□□□□ -1.4
HERC1-209ENST00000560519 Q0VG73 95 aa6.31□□□□□ -1.4
HERC1-209ENST00000560519 LINC01620Q4KN68 170 aa6.31□□□□□ -1.4
HERC1-209ENST00000560519 DNLZQ5SXM8 178 aa6.31□□□□□ -1.4
HERC1-209ENST00000560519 Q8N3U1 123 aa6.31□□□□□ -1.4
HERC1-209ENST00000560519 IL36BQ9NZH7 164 aa6.31□□□□□ -1.4
HERC1-209ENST00000560519 TMSB15BA0A087X1C1 80 aa6.3□□□□□ -1.4
HERC1-209ENST00000560519 CRPP02741 224 aa6.3□□□□□ -1.4
HERC1-209ENST00000560519 RNASE3P12724 160 aaKnown RBP6.3□□□□□ -1.4
HERC1-209ENST00000560519 KRTAP10-4P60372 401 aaPredicted RBP6.3□□□□□ -1.4
HERC1-209ENST00000560519 IFITM2Q01629 132 aa6.3□□□□□ -1.4
HERC1-209ENST00000560519 NIT1Q86X76 327 aa6.3□□□□□ -1.4
HERC1-209ENST00000560519 OCC1Q8TAD7 63 aa6.3□□□□□ -1.4
HERC1-209ENST00000560519 GRIFINA4D1Z8 144 aa6.29□□□□□ -1.4
HERC1-209ENST00000560519 C19orf71A6NCJ1 209 aa6.29□□□□□ -1.4
HERC1-209ENST00000560519 H3BVH4 76 aa6.29□□□□□ -1.4
HERC1-209ENST00000560519 ARMS2P0C7Q2 107 aa6.29□□□□□ -1.4
HERC1-209ENST00000560519 TMEM241Q24JQ0 296 aa6.29□□□□□ -1.4
HERC1-209ENST00000560519 ATRAIDQ6UW56 229 aa6.29□□□□□ -1.4
HERC1-209ENST00000560519 OR2D3Q8NGH3 330 aa6.29□□□□□ -1.4
HERC1-209ENST00000560519 UBE2WQ96B02 151 aa6.29□□□□□ -1.4
HERC1-209ENST00000560519 C1orf43Q9BWL3 253 aa6.29□□□□□ -1.4
HERC1-209ENST00000560519 KLK12Q9UKR0 248 aa6.29□□□□□ -1.4
HERC1-209ENST00000560519 PHLDA3Q9Y5J5 127 aa6.29□□□□□ -1.4
HERC1-209ENST00000560519 PKIAP61925 76 aa6.28□□□□□ -1.4
HERC1-209ENST00000560519 ZFP82Q8N141 532 aa6.28□□□□□ -1.4
HERC1-209ENST00000560519 RPP21Q9H633 154 aaKnown RBP6.28□□□□□ -1.4
HERC1-209ENST00000560519 NAT8Q9UHE5 227 aa6.28□□□□□ -1.4
HERC1-209ENST00000560519 TRBV10-1A0A0K0K1A3 114 aa6.27□□□□□ -1.41
HERC1-209ENST00000560519 C9JQL5 133 aa6.27□□□□□ -1.41
HERC1-209ENST00000560519 K7EN84 100 aa6.27□□□□□ -1.41
HERC1-209ENST00000560519 OR5AL1P0C617 328 aa6.27□□□□□ -1.41
HERC1-209ENST00000560519 RPL36AP83881 106 aaKnown RBP6.27□□□□□ -1.41
HERC1-209ENST00000560519 RPL19P84098 196 aaKnown RBP6.27□□□□□ -1.41
HERC1-209ENST00000560519 SRSF3P84103 164 aaKnown RBP6.27□□□□□ -1.41
HERC1-209ENST00000560519 FAM74A4Q5TZK3 123 aa6.27□□□□□ -1.41
HERC1-209ENST00000560519 UQCC3Q6UW78 93 aa6.27□□□□□ -1.41
HERC1-209ENST00000560519 FAM231DQ6ZW35 169 aa6.27□□□□□ -1.41
HERC1-209ENST00000560519 LINC01551Q86U37 167 aa6.27□□□□□ -1.41
HERC1-209ENST00000560519 C15orf54Q8N8G6 183 aa6.27□□□□□ -1.41
HERC1-209ENST00000560519 SREK1IP1Q8N9Q2 155 aaPredicted RBP6.27□□□□□ -1.41
HERC1-209ENST00000560519 NUDT10Q8NFP7 164 aa6.27□□□□□ -1.41
HERC1-209ENST00000560519 RPL36ALQ969Q0 106 aaKnown RBP6.27□□□□□ -1.41
HERC1-209ENST00000560519 NUDT11Q96G61 164 aa6.27□□□□□ -1.41
HERC1-209ENST00000560519 F2Z2F3 143 aa6.26□□□□□ -1.41
HERC1-209ENST00000560519 SNAI2O43623 268 aa6.26□□□□□ -1.41
HERC1-209ENST00000560519 GATCO43716 136 aaKnown RBP6.26□□□□□ -1.41
HERC1-209ENST00000560519 SPANXN1Q5VSR9 72 aa6.26□□□□□ -1.41
HERC1-209ENST00000560519 UFSP1Q6NVU6 142 aa6.26□□□□□ -1.41
HERC1-209ENST00000560519 C14orf178Q8N769 122 aaPredicted RBP6.26□□□□□ -1.41
HERC1-209ENST00000560519 FER1L6-AS1Q8NA97 138 aa6.26□□□□□ -1.41
HERC1-209ENST00000560519 SSBP4Q9BWG4 385 aaPredicted RBP6.26□□□□□ -1.41
HERC1-209ENST00000560519 SAMD10Q9BYL1 202 aa6.26□□□□□ -1.41
HERC1-209ENST00000560519 RNASE7Q9H1E1 156 aaKnown RBP6.26□□□□□ -1.41
HERC1-209ENST00000560519 UBR4Q5T4S7 5183 aa6.26□□□□□ -1.41
HERC1-209ENST00000560519 A8MWL6 223 aa6.25□□□□□ -1.41
HERC1-209ENST00000560519 M0R381 172 aa6.25□□□□□ -1.41
HERC1-209ENST00000560519 HLA-DQA1P01909 254 aa6.25□□□□□ -1.41
HERC1-209ENST00000560519 CACNG7P62955 275 aa6.25□□□□□ -1.41
HERC1-209ENST00000560519 ADIRFQ15847 76 aa6.25□□□□□ -1.41
HERC1-209ENST00000560519 CT83Q5H943 113 aa6.25□□□□□ -1.41
HERC1-209ENST00000560519 DGAT2L7PQ6IED9 249 aa6.25□□□□□ -1.41
HERC1-209ENST00000560519 TPPP3Q9BW30 176 aa6.25□□□□□ -1.41
HERC1-209ENST00000560519 OSTCQ9NRP0 149 aa6.25□□□□□ -1.41
HERC1-209ENST00000560519 LRP1Q07954 4544 aaKnown RBP6.24□□□□□ -1.41
HERC1-209ENST00000560519 TRBV7-3A0A075B6L6 115 aa6.24□□□□□ -1.41
HERC1-209ENST00000560519 IGLC6P0CF74 106 aa6.24□□□□□ -1.41
HERC1-209ENST00000560519 RPL23P62829 140 aaKnown RBP6.24□□□□□ -1.41
HERC1-209ENST00000560519 PNRC1Q12796 327 aaPredicted RBP6.24□□□□□ -1.41
HERC1-209ENST00000560519 MIAQ16674 131 aa6.24□□□□□ -1.41
HERC1-209ENST00000560519 Q6ZRU5 148 aa6.24□□□□□ -1.41
HERC1-209ENST00000560519 COMMD7Q86VX2 200 aa6.24□□□□□ -1.41
HERC1-209ENST00000560519 OR10AG1Q8NH19 301 aa6.24□□□□□ -1.41
HERC1-209ENST00000560519 ISOC2Q96AB3 205 aa6.24□□□□□ -1.41
HERC1-209ENST00000560519 SFRP2Q96HF1 295 aa6.24□□□□□ -1.41
HERC1-209ENST00000560519 FAT3Q8TDW7 4589 aa6.24□□□□□ -1.41
HERC1-209ENST00000560519 TRBV6-8A0A0A6YYG3 113 aa6.23□□□□□ -1.41
HERC1-209ENST00000560519 LINC00862A6NCI5 91 aa6.23□□□□□ -1.41
HERC1-209ENST00000560519 FAM231BA6NCW3 169 aa6.23□□□□□ -1.41
HERC1-209ENST00000560519 USP17L23D6RBM5 183 aa6.23□□□□□ -1.41
HERC1-209ENST00000560519 TMEM262E9PQX1 116 aa6.23□□□□□ -1.41
HERC1-209ENST00000560519 ANGP03950 147 aaKnown RBP6.23□□□□□ -1.41
HERC1-209ENST00000560519 SMIM17P0DL12 118 aa6.23□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 68.2 ms