RNA–Protein interactions for RNA: ENST00000560502.5

LDLR-213, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 509 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-213ENST00000560502 MDFICQ9P1T7 246 aa9.91□□□□□ -0.82
LDLR-213ENST00000560502 D6R8Y8 96 aa9.9□□□□□ -0.82
LDLR-213ENST00000560502 C11orf72Q8NBR9 251 aa9.9□□□□□ -0.82
LDLR-213ENST00000560502 TMEM18Q96B42 140 aa9.9□□□□□ -0.82
LDLR-213ENST00000560502 C16orf74Q96GX8 76 aa9.9□□□□□ -0.82
LDLR-213ENST00000560502 A8MWV9 139 aa9.89□□□□□ -0.83
LDLR-213ENST00000560502 M0R2N4 97 aa9.89□□□□□ -0.83
LDLR-213ENST00000560502 SERF1AO75920 110 aa9.89□□□□□ -0.83
LDLR-213ENST00000560502 SSTP61278 116 aa9.89□□□□□ -0.83
LDLR-213ENST00000560502 Q6ZR54 194 aa9.89□□□□□ -0.83
LDLR-213ENST00000560502 RNASE8Q8TDE3 154 aaKnown RBP9.89□□□□□ -0.83
LDLR-213ENST00000560502 SMIM9A6NGZ8 99 aa9.88□□□□□ -0.83
LDLR-213ENST00000560502 PMCHP20382 165 aa9.88□□□□□ -0.83
LDLR-213ENST00000560502 ZNF876PQ49A33 203 aa9.88□□□□□ -0.83
LDLR-213ENST00000560502 MAP1LC3AQ9H492 121 aa9.88□□□□□ -0.83
LDLR-213ENST00000560502 KIF25-AS1Q9Y6Z4 181 aa9.88□□□□□ -0.83
LDLR-213ENST00000560502 PRSS47A8MTI9 375 aa9.87□□□□□ -0.83
LDLR-213ENST00000560502 RHODO00212 210 aa9.87□□□□□ -0.83
LDLR-213ENST00000560502 SPART-AS1P0CW21 52 aa9.87□□□□□ -0.83
LDLR-213ENST00000560502 LINC00310P59036 64 aa9.87□□□□□ -0.83
LDLR-213ENST00000560502 DAZ2Q13117 558 aaKnown RBP9.87□□□□□ -0.83
LDLR-213ENST00000560502 C14orf178Q8N769 122 aaPredicted RBP9.87□□□□□ -0.83
LDLR-213ENST00000560502 HIST1H2BLQ99880 126 aa9.87□□□□□ -0.83
LDLR-213ENST00000560502 NXT2Q9NPJ8 142 aaKnown RBP9.87□□□□□ -0.83
LDLR-213ENST00000560502 HSBP1O75506 76 aa9.86□□□□□ -0.83
LDLR-213ENST00000560502 HTN1P15515 57 aa9.86□□□□□ -0.83
LDLR-213ENST00000560502 RRN3P1Q2M238 152 aa9.86□□□□□ -0.83
LDLR-213ENST00000560502 DKK2Q9UBU2 259 aa9.86□□□□□ -0.83
LDLR-213ENST00000560502 IGLV2-18A0A075B6J9 118 aa9.85□□□□□ -0.83
LDLR-213ENST00000560502 IFITM10A6NMD0 228 aa9.85□□□□□ -0.83
LDLR-213ENST00000560502 CIDEAO60543 219 aa9.85□□□□□ -0.83
LDLR-213ENST00000560502 TNFRSF6BO95407 300 aa9.85□□□□□ -0.83
LDLR-213ENST00000560502 NPYP01303 97 aa9.85□□□□□ -0.83
LDLR-213ENST00000560502 MGPP08493 103 aa9.85□□□□□ -0.83
LDLR-213ENST00000560502 LINC00614P0C842 121 aa9.85□□□□□ -0.83
LDLR-213ENST00000560502 IQCJQ1A5X6 159 aa9.85□□□□□ -0.83
LDLR-213ENST00000560502 RNASEKQ6P5S7 137 aaKnown RBP9.85□□□□□ -0.83
LDLR-213ENST00000560502 FA2HQ7L5A8 372 aa9.85□□□□□ -0.83
LDLR-213ENST00000560502 PRSS3P2Q8NHM4 247 aa9.85□□□□□ -0.83
LDLR-213ENST00000560502 RASL10AQ92737 203 aa9.85□□□□□ -0.83
LDLR-213ENST00000560502 C20orf78Q9BR46 151 aa9.85□□□□□ -0.83
LDLR-213ENST00000560502 SAMD10Q9BYL1 202 aa9.85□□□□□ -0.83
LDLR-213ENST00000560502 AP5S1Q9NUS5 200 aa9.85□□□□□ -0.83
LDLR-213ENST00000560502 HSPG2P98160 4391 aa9.84□□□□□ -0.83
LDLR-213ENST00000560502 IGHV3OR16-12A0A075B7B8 117 aa9.84□□□□□ -0.83
LDLR-213ENST00000560502 TEX48A0A1B0GUV7 120 aa9.84□□□□□ -0.83
LDLR-213ENST00000560502 LINC01546A6NGU7 62 aa9.84□□□□□ -0.83
LDLR-213ENST00000560502 H7C1H1 209 aa9.84□□□□□ -0.83
LDLR-213ENST00000560502 K7EMI3 77 aa9.84□□□□□ -0.83
LDLR-213ENST00000560502 FABP4P15090 132 aa9.84□□□□□ -0.83
LDLR-213ENST00000560502 AKR1D1P51857 326 aa9.84□□□□□ -0.83
LDLR-213ENST00000560502 EMP1P54849 157 aa9.84□□□□□ -0.83
LDLR-213ENST00000560502 LINC00315P59091 139 aa9.84□□□□□ -0.83
LDLR-213ENST00000560502 RPL32P62910 135 aaKnown RBP9.84□□□□□ -0.83
LDLR-213ENST00000560502 PDZD11Q5EBL8 140 aa9.84□□□□□ -0.83
LDLR-213ENST00000560502 FAM222AQ5U5X8 452 aa9.84□□□□□ -0.83
LDLR-213ENST00000560502 NIT1Q86X76 327 aa9.84□□□□□ -0.83
LDLR-213ENST00000560502 UBE2DNLQ8IWF7 75 aa9.84□□□□□ -0.83
LDLR-213ENST00000560502 NRACQ8N912 160 aa9.84□□□□□ -0.83
LDLR-213ENST00000560502 NCR2O95944 276 aa9.83□□□□□ -0.84
LDLR-213ENST00000560502 CRYGDP07320 174 aa9.83□□□□□ -0.84
LDLR-213ENST00000560502 SMIM6P0DI80 62 aa9.83□□□□□ -0.84
LDLR-213ENST00000560502 AMTP48728 403 aa9.83□□□□□ -0.84
LDLR-213ENST00000560502 ZFP2Q6ZN57 461 aa9.83□□□□□ -0.84
LDLR-213ENST00000560502 KRTAP4-5Q9BYR2 181 aa9.83□□□□□ -0.84
LDLR-213ENST00000560502 AZU1P20160 251 aa9.82□□□□□ -0.84
LDLR-213ENST00000560502 A0A087WWL8 130 aa9.81□□□□□ -0.84
LDLR-213ENST00000560502 TRBV6-5A0A0K0K1A5 114 aa9.81□□□□□ -0.84
LDLR-213ENST00000560502 SMKR1H3BMG3 65 aa9.81□□□□□ -0.84
LDLR-213ENST00000560502 RS1O15537 224 aa9.81□□□□□ -0.84
LDLR-213ENST00000560502 NUPR1O60356 82 aa9.81□□□□□ -0.84
LDLR-213ENST00000560502 SUMO2P61956 95 aaKnown RBP9.81□□□□□ -0.84
LDLR-213ENST00000560502 ZNF56Q15929 161 aa9.81□□□□□ -0.84
LDLR-213ENST00000560502 SUMO4Q6EEV6 95 aa9.81□□□□□ -0.84
LDLR-213ENST00000560502 Q8N8P6 123 aa9.81□□□□□ -0.84
LDLR-213ENST00000560502 OR10D4PQ8NGN7 298 aa9.81□□□□□ -0.84
LDLR-213ENST00000560502 URB1-AS1Q96HZ7 61 aa9.81□□□□□ -0.84
LDLR-213ENST00000560502 PLAC8L1A1L4L8 177 aa9.8□□□□□ -0.84
LDLR-213ENST00000560502 F5H697 171 aa9.8□□□□□ -0.84
LDLR-213ENST00000560502 FAM74A4Q5TZK3 123 aa9.8□□□□□ -0.84
LDLR-213ENST00000560502 CFAP126Q5VTH2 177 aa9.8□□□□□ -0.84
LDLR-213ENST00000560502 UFSP1Q6NVU6 142 aa9.8□□□□□ -0.84
LDLR-213ENST00000560502 SMIM2Q9BVW6 85 aa9.8□□□□□ -0.84
LDLR-213ENST00000560502 TRGV1A0A0A0MS02 117 aa9.79□□□□□ -0.84
LDLR-213ENST00000560502 TRAV26-2A0A0B4J265 109 aa9.79□□□□□ -0.84
LDLR-213ENST00000560502 TRAV4A0A0B4J268 109 aa9.79□□□□□ -0.84
LDLR-213ENST00000560502 TCAPO15273 167 aa9.79□□□□□ -0.84
LDLR-213ENST00000560502 IFI27P40305 119 aaPredicted RBP9.79□□□□□ -0.84
LDLR-213ENST00000560502 C1orf134Q5TEV5 83 aa9.79□□□□□ -0.84
LDLR-213ENST00000560502 C18orf15Q96N68 181 aa9.79□□□□□ -0.84
LDLR-213ENST00000560502 JPT2Q9H910 190 aa9.79□□□□□ -0.84
LDLR-213ENST00000560502 MRPL16Q9NX20 251 aaKnown RBP9.79□□□□□ -0.84
LDLR-213ENST00000560502 LRP1BQ9NZR2 4599 aa9.78□□□□□ -0.84
LDLR-213ENST00000560502 IGHV1-24A0A0C4DH33 117 aa9.78□□□□□ -0.84
LDLR-213ENST00000560502 LINC01549A6NIU2 74 aa9.78□□□□□ -0.84
LDLR-213ENST00000560502 M0QY20 66 aa9.78□□□□□ -0.84
LDLR-213ENST00000560502 HTN3P15516 51 aa9.78□□□□□ -0.84
LDLR-213ENST00000560502 G0S2P27469 103 aa9.78□□□□□ -0.84
LDLR-213ENST00000560502 ST20Q9HBF5 79 aa9.78□□□□□ -0.84
LDLR-213ENST00000560502 HSPB8Q9UJY1 196 aa9.78□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 69.7 ms