RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 UFSP1Q6NVU6 142 aa19.12■□□□□ 0.65
CCDC88C-205ENST00000553403 Q6ZN92 141 aa19.12■□□□□ 0.65
CCDC88C-205ENST00000553403 KIR2DL4Q99706 377 aa19.11■□□□□ 0.65
CCDC88C-205ENST00000553403 M0R143 59 aa19.11■□□□□ 0.65
CCDC88C-205ENST00000553403 ZMAT4Q9H898 229 aa19.11■□□□□ 0.65
CCDC88C-205ENST00000553403 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP19.1■□□□□ 0.65
CCDC88C-205ENST00000553403 GIG44P09565 113 aaPredicted RBP19.1■□□□□ 0.65
CCDC88C-205ENST00000553403 HNRNPA3P51991 378 aaKnown RBP19.1■□□□□ 0.65
CCDC88C-205ENST00000553403 C2orf66Q6UXQ4 117 aa19.1■□□□□ 0.65
CCDC88C-205ENST00000553403 IL17DQ8TAD2 202 aa19.1■□□□□ 0.65
CCDC88C-205ENST00000553403 SCGB3A1Q96QR1 104 aa19.1■□□□□ 0.65
CCDC88C-205ENST00000553403 CITED1Q99966 193 aa19.1■□□□□ 0.65
CCDC88C-205ENST00000553403 WFDC10AQ9H1F0 79 aa19.1■□□□□ 0.65
CCDC88C-205ENST00000553403 DKK2Q9UBU2 259 aa19.1■□□□□ 0.65
CCDC88C-205ENST00000553403 AZU1P20160 251 aa19.09■□□□□ 0.65
CCDC88C-205ENST00000553403 KRTAP24-1Q3LI83 254 aa19.09■□□□□ 0.65
CCDC88C-205ENST00000553403 NEGR1Q7Z3B1 354 aa19.09■□□□□ 0.65
CCDC88C-205ENST00000553403 C1QTNF4Q9BXJ3 329 aa19.09■□□□□ 0.65
CCDC88C-205ENST00000553403 RHODO00212 210 aa19.08■□□□□ 0.65
CCDC88C-205ENST00000553403 C9orf66Q5T8R8 295 aa19.08■□□□□ 0.65
CCDC88C-205ENST00000553403 SNHG12Q9BXW3 62 aa19.08■□□□□ 0.65
CCDC88C-205ENST00000553403 IGHV3OR16-12A0A075B7B8 117 aa19.08■□□□□ 0.64
CCDC88C-205ENST00000553403 CFAP126Q5VTH2 177 aa19.08■□□□□ 0.64
CCDC88C-205ENST00000553403 ZFP2Q6ZN57 461 aa19.08■□□□□ 0.64
CCDC88C-205ENST00000553403 RS1O15537 224 aa19.07■□□□□ 0.64
CCDC88C-205ENST00000553403 RNASE8Q8TDE3 154 aaKnown RBP19.07■□□□□ 0.64
CCDC88C-205ENST00000553403 C2orf88Q9BSF0 95 aa19.07■□□□□ 0.64
CCDC88C-205ENST00000553403 MRPS16Q9Y3D3 137 aaKnown RBP19.07■□□□□ 0.64
CCDC88C-205ENST00000553403 TRAV12-1A0A0B4J245 112 aa19.06■□□□□ 0.64
CCDC88C-205ENST00000553403 EREGO14944 169 aa19.06■□□□□ 0.64
CCDC88C-205ENST00000553403 RPL35AP18077 110 aaKnown RBP19.06■□□□□ 0.64
CCDC88C-205ENST00000553403 TMEM263Q8WUH6 116 aaKnown RBP19.06■□□□□ 0.64
CCDC88C-205ENST00000553403 MRPL16Q9NX20 251 aaKnown RBP19.06■□□□□ 0.64
CCDC88C-205ENST00000553403 CYSLTR1Q9Y271 337 aa19.06■□□□□ 0.64
CCDC88C-205ENST00000553403 A0A087WX48 190 aa19.05■□□□□ 0.64
CCDC88C-205ENST00000553403 RHOHQ15669 191 aa19.05■□□□□ 0.64
CCDC88C-205ENST00000553403 SLC25A34Q6PIV7 304 aa19.05■□□□□ 0.64
CCDC88C-205ENST00000553403 ERASQ7Z444 233 aa19.05■□□□□ 0.64
CCDC88C-205ENST00000553403 DPM2O94777 84 aa19.03■□□□□ 0.64
CCDC88C-205ENST00000553403 IGKCP01834 107 aa19.03■□□□□ 0.64
CCDC88C-205ENST00000553403 IGHV3-73A0A0B4J1V6 119 aa19.02■□□□□ 0.64
CCDC88C-205ENST00000553403 COX8AP10176 69 aa19.02■□□□□ 0.64
CCDC88C-205ENST00000553403 ANKRD39Q53RE8 183 aa19.02■□□□□ 0.64
CCDC88C-205ENST00000553403 I3L3M4 83 aa19.01■□□□□ 0.63
CCDC88C-205ENST00000553403 CSNK1G2-AS1Q8NCQ2 148 aa19.01■□□□□ 0.63
CCDC88C-205ENST00000553403 GTSCR1Q86UQ5 136 aa19.01■□□□□ 0.63
CCDC88C-205ENST00000553403 NEXN-AS1Q8NBZ9 246 aa19.01■□□□□ 0.63
CCDC88C-205ENST00000553403 STPG4Q8N801 248 aa19■□□□□ 0.63
CCDC88C-205ENST00000553403 C16orf74Q96GX8 76 aa19■□□□□ 0.63
CCDC88C-205ENST00000553403 TP53TG1Q9Y2A0 90 aa19■□□□□ 0.63
CCDC88C-205ENST00000553403 IGHV3-53P01767 116 aa18.99■□□□□ 0.63
CCDC88C-205ENST00000553403 MRPL35Q9NZE8 188 aaKnown RBP18.99■□□□□ 0.63
CCDC88C-205ENST00000553403 TSHBP01222 138 aa18.98■□□□□ 0.63
CCDC88C-205ENST00000553403 DAZ2Q13117 558 aaKnown RBP18.98■□□□□ 0.63
CCDC88C-205ENST00000553403 BAALCQ8WXS3 180 aa18.98■□□□□ 0.63
CCDC88C-205ENST00000553403 TMEM141Q96I45 108 aa18.98■□□□□ 0.63
CCDC88C-205ENST00000553403 DNAJC30Q96LL9 226 aa18.98■□□□□ 0.63
CCDC88C-205ENST00000553403 HHLA3Q9XRX5 114 aa18.98■□□□□ 0.63
CCDC88C-205ENST00000553403 TIMM17AQ99595 171 aa18.98■□□□□ 0.63
CCDC88C-205ENST00000553403 TNFRSF18Q9Y5U5 241 aa18.98■□□□□ 0.63
CCDC88C-205ENST00000553403 STAB1Q9NY15 2570 aa18.97■□□□□ 0.63
CCDC88C-205ENST00000553403 TRGV1A0A0A0MS02 117 aa18.97■□□□□ 0.63
CCDC88C-205ENST00000553403 IGIPA6NJ69 53 aa18.97■□□□□ 0.63
CCDC88C-205ENST00000553403 F8VRH5 84 aa18.97■□□□□ 0.63
CCDC88C-205ENST00000553403 PLNP26678 52 aa18.97■□□□□ 0.63
CCDC88C-205ENST00000553403 Q6ZSN1 163 aa18.97■□□□□ 0.63
CCDC88C-205ENST00000553403 P0DMU3 169 aa18.95■□□□□ 0.62
CCDC88C-205ENST00000553403 FAM231AP0DMU4 169 aa18.95■□□□□ 0.62
CCDC88C-205ENST00000553403 FAM231CP0DMU5 169 aa18.95■□□□□ 0.62
CCDC88C-205ENST00000553403 CHTOPQ9Y3Y2 248 aaKnown RBP18.95■□□□□ 0.62
CCDC88C-205ENST00000553403 NACAE9PAV3 2078 aa18.95■□□□□ 0.62
CCDC88C-205ENST00000553403 OR4C5Q8NGB2 326 aa18.95■□□□□ 0.62
CCDC88C-205ENST00000553403 TRAV4A0A0B4J268 109 aa18.93■□□□□ 0.62
CCDC88C-205ENST00000553403 FGF6P10767 208 aa18.93■□□□□ 0.62
CCDC88C-205ENST00000553403 RPL39P62891 51 aaKnown RBP18.93■□□□□ 0.62
CCDC88C-205ENST00000553403 RRN3P1Q2M238 152 aa18.93■□□□□ 0.62
CCDC88C-205ENST00000553403 PLAC8L1A1L4L8 177 aa18.92■□□□□ 0.62
CCDC88C-205ENST00000553403 PRSS29PA6NIE9 313 aa18.92■□□□□ 0.62
CCDC88C-205ENST00000553403 DLEU1O43261 78 aa18.92■□□□□ 0.62
CCDC88C-205ENST00000553403 C20orf203Q8NBC4 194 aa18.92■□□□□ 0.62
CCDC88C-205ENST00000553403 WFDC9Q8NEX5 89 aa18.92■□□□□ 0.62
CCDC88C-205ENST00000553403 DEFB104AQ8WTQ1 72 aa18.92■□□□□ 0.62
CCDC88C-205ENST00000553403 Q6ZTI0 123 aa18.92■□□□□ 0.62
CCDC88C-205ENST00000553403 BOD1L2Q8IYS8 172 aa18.92■□□□□ 0.62
CCDC88C-205ENST00000553403 OVOL2Q9BRP0 275 aa18.92■□□□□ 0.62
CCDC88C-205ENST00000553403 NOP10Q9NPE3 64 aaKnown RBP18.91■□□□□ 0.62
CCDC88C-205ENST00000553403 TP73-AS1Q9UF72 201 aa18.91■□□□□ 0.62
CCDC88C-205ENST00000553403 ZC2HC1BQ5TFG8 222 aa18.9■□□□□ 0.62
CCDC88C-205ENST00000553403 C12orf54Q6X4T0 127 aa18.9■□□□□ 0.62
CCDC88C-205ENST00000553403 PMVKQ15126 192 aa18.89■□□□□ 0.61
CCDC88C-205ENST00000553403 BATFQ16520 125 aa18.89■□□□□ 0.61
CCDC88C-205ENST00000553403 CIDEAO60543 219 aa18.88■□□□□ 0.61
CCDC88C-205ENST00000553403 NMUP48645 174 aa18.87■□□□□ 0.61
CCDC88C-205ENST00000553403 ZNF479Q96JC4 524 aa18.87■□□□□ 0.61
CCDC88C-205ENST00000553403 SIVA1O15304 175 aa18.86■□□□□ 0.61
CCDC88C-205ENST00000553403 C2orf91Q6ZV80 131 aa18.86■□□□□ 0.61
CCDC88C-205ENST00000553403 Q9UF83 564 aa18.86■□□□□ 0.61
CCDC88C-205ENST00000553403 TRBV10-1A0A0K0K1A3 114 aa18.85■□□□□ 0.61
CCDC88C-205ENST00000553403 A0A1B0GV90 55 aa18.85■□□□□ 0.61
CCDC88C-205ENST00000553403 WIPF1O43516 503 aa18.85■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms