RNA–Protein interactions for RNA: ENST00000544910.5

VPS50-220, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 2 BASIC

Gene VPS50, Length 5,736 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-220ENST00000544910 NEXN-AS1Q8NBZ9 246 aa4.36□□□□□ -1.71
VPS50-220ENST00000544910 C11orf21Q9P2W6 132 aa4.36□□□□□ -1.71
VPS50-220ENST00000544910 RPL39P62891 51 aaKnown RBP4.36□□□□□ -1.71
VPS50-220ENST00000544910 PRR9Q5T870 116 aa4.36□□□□□ -1.71
VPS50-220ENST00000544910 C2orf91Q6ZV80 131 aa4.36□□□□□ -1.71
VPS50-220ENST00000544910 ZFAND2AQ8N6M9 145 aa4.36□□□□□ -1.71
VPS50-220ENST00000544910 NRACQ8N912 160 aa4.36□□□□□ -1.71
VPS50-220ENST00000544910 U3KQE9 123 aa4.36□□□□□ -1.71
VPS50-220ENST00000544910 CHD7Q9P2D1 2997 aa4.36□□□□□ -1.71
VPS50-220ENST00000544910 V9GYY9 64 aa4.36□□□□□ -1.71
VPS50-220ENST00000544910 FAM186AA6NE01 2351 aa4.36□□□□□ -1.71
VPS50-220ENST00000544910 IGHV4-4A0A075B6R2 117 aa4.36□□□□□ -1.71
VPS50-220ENST00000544910 PRB1P04280 392 aa4.36□□□□□ -1.71
VPS50-220ENST00000544910 SLC25A29Q8N8R3 303 aa4.36□□□□□ -1.71
VPS50-220ENST00000544910 ZNRF2Q8NHG8 242 aa4.36□□□□□ -1.71
VPS50-220ENST00000544910 DSCAMO60469 2012 aa4.36□□□□□ -1.71
VPS50-220ENST00000544910 TCL1BO95988 128 aa4.35□□□□□ -1.71
VPS50-220ENST00000544910 PFN2P35080 140 aa4.35□□□□□ -1.71
VPS50-220ENST00000544910 CRIP2P52943 208 aaPredicted RBP4.35□□□□□ -1.71
VPS50-220ENST00000544910 APRG1Q8IVJ8 170 aa4.35□□□□□ -1.71
VPS50-220ENST00000544910 LRRC75A-AS1Q8N1F1 130 aa4.35□□□□□ -1.71
VPS50-220ENST00000544910 VSIG2Q96IQ7 327 aa4.35□□□□□ -1.71
VPS50-220ENST00000544910 RNASE13Q5GAN3 156 aaKnown RBP4.35□□□□□ -1.71
VPS50-220ENST00000544910 Q6YL49 198 aa4.35□□□□□ -1.71
VPS50-220ENST00000544910 PTH2Q96A98 100 aa4.35□□□□□ -1.71
VPS50-220ENST00000544910 Q9H8V8 135 aa4.35□□□□□ -1.71
VPS50-220ENST00000544910 MDFICQ9P1T7 246 aa4.35□□□□□ -1.71
VPS50-220ENST00000544910 NCOR1O75376 2440 aa4.35□□□□□ -1.71
VPS50-220ENST00000544910 IGLV1-40P01703 118 aa4.35□□□□□ -1.71
VPS50-220ENST00000544910 BRK1Q8WUW1 75 aa4.35□□□□□ -1.71
VPS50-220ENST00000544910 CHD9Q3L8U1 2897 aa4.35□□□□□ -1.71
VPS50-220ENST00000544910 IGKV2D-29A0A075B6S2 120 aaPredicted RBP4.35□□□□□ -1.71
VPS50-220ENST00000544910 IGKV3D-7A0A0C4DH55 119 aa4.35□□□□□ -1.71
VPS50-220ENST00000544910 IGKV2-29A2NJV5 120 aaPredicted RBP4.35□□□□□ -1.71
VPS50-220ENST00000544910 PSMG3-AS1Q96PY0 264 aa4.35□□□□□ -1.71
VPS50-220ENST00000544910 C5orf42Q9H799 3197 aa4.34□□□□□ -1.71
VPS50-220ENST00000544910 PDE6GP18545 87 aa4.34□□□□□ -1.71
VPS50-220ENST00000544910 CFHR3Q02985 330 aa4.34□□□□□ -1.71
VPS50-220ENST00000544910 ATP5EP2Q5VTU8 51 aa4.34□□□□□ -1.71
VPS50-220ENST00000544910 GAS8-AS1O95177 125 aa4.34□□□□□ -1.71
VPS50-220ENST00000544910 NDUFA7O95182 113 aa4.34□□□□□ -1.71
VPS50-220ENST00000544910 IGHV4-31P0DP07 118 aa4.34□□□□□ -1.71
VPS50-220ENST00000544910 ICE1Q9Y2F5 2266 aa4.34□□□□□ -1.71
VPS50-220ENST00000544910 K7EQD1 137 aa4.34□□□□□ -1.71
VPS50-220ENST00000544910 CCL24O00175 119 aa4.34□□□□□ -1.71
VPS50-220ENST00000544910 RS1O15537 224 aa4.34□□□□□ -1.71
VPS50-220ENST00000544910 ATP5EP56381 51 aaPredicted RBP4.34□□□□□ -1.71
VPS50-220ENST00000544910 Q6Q795 121 aa4.34□□□□□ -1.71
VPS50-220ENST00000544910 FAM236DA0A1B0GTK5 79 aa4.33□□□□□ -1.72
VPS50-220ENST00000544910 K7EQG2 157 aa4.33□□□□□ -1.72
VPS50-220ENST00000544910 P0DMU3 169 aa4.33□□□□□ -1.72
VPS50-220ENST00000544910 FAM231AP0DMU4 169 aa4.33□□□□□ -1.72
VPS50-220ENST00000544910 FAM231CP0DMU5 169 aa4.33□□□□□ -1.72
VPS50-220ENST00000544910 FAM236CP0DP71 79 aa4.33□□□□□ -1.72
VPS50-220ENST00000544910 USF3Q68DE3 2245 aa4.33□□□□□ -1.72
VPS50-220ENST00000544910 IGKV2D-26A0A0A0MRZ7 120 aa4.33□□□□□ -1.72
VPS50-220ENST00000544910 A0A1W2PPR1 153 aa4.33□□□□□ -1.72
VPS50-220ENST00000544910 MRPL55Q7Z7F7 128 aaKnown RBP4.33□□□□□ -1.72
VPS50-220ENST00000544910 NDUFC2-KCTD14E9PQ53 114 aa4.33□□□□□ -1.72
VPS50-220ENST00000544910 RNASE3P12724 160 aaKnown RBP4.33□□□□□ -1.72
VPS50-220ENST00000544910 MAP6D1Q9H9H5 199 aa4.33□□□□□ -1.72
VPS50-220ENST00000544910 TRAV25A0A0B4J276 109 aa4.32□□□□□ -1.72
VPS50-220ENST00000544910 BRI3O95415 125 aa4.32□□□□□ -1.72
VPS50-220ENST00000544910 HTN3P15516 51 aa4.32□□□□□ -1.72
VPS50-220ENST00000544910 C3orf56Q8N813 242 aa4.32□□□□□ -1.72
VPS50-220ENST00000544910 CLUHP3Q96NS8 147 aa4.32□□□□□ -1.72
VPS50-220ENST00000544910 ZGRF1Q86YA3 2104 aa4.32□□□□□ -1.72
VPS50-220ENST00000544910 FAM240AA0A1B0GVK7 77 aa4.32□□□□□ -1.72
VPS50-220ENST00000544910 KLLNB2CW77 178 aa4.32□□□□□ -1.72
VPS50-220ENST00000544910 MP68P56378 58 aa4.32□□□□□ -1.72
VPS50-220ENST00000544910 Q6ZQT7 251 aa4.32□□□□□ -1.72
VPS50-220ENST00000544910 C20orf203Q8NBC4 194 aa4.32□□□□□ -1.72
VPS50-220ENST00000544910 C16orf74Q96GX8 76 aa4.32□□□□□ -1.72
VPS50-220ENST00000544910 SND1-IT1Q9HBX3 110 aa4.32□□□□□ -1.72
VPS50-220ENST00000544910 NOP10Q9NPE3 64 aaKnown RBP4.32□□□□□ -1.72
VPS50-220ENST00000544910 A0A0J9YXV3 536 aa4.32□□□□□ -1.72
VPS50-220ENST00000544910 LINC01546A6NGU7 62 aa4.32□□□□□ -1.72
VPS50-220ENST00000544910 CXCL5P42830 114 aa4.32□□□□□ -1.72
VPS50-220ENST00000544910 Q6ZS46 218 aa4.32□□□□□ -1.72
VPS50-220ENST00000544910 MAPKAPK5-AS1Q8N8E1 139 aa4.32□□□□□ -1.72
VPS50-220ENST00000544910 OPRPNQ99935 248 aaPredicted RBP4.32□□□□□ -1.72
VPS50-220ENST00000544910 ZNF702PQ9H963 129 aa4.32□□□□□ -1.72
VPS50-220ENST00000544910 A0A096LNJ9 63 aa4.32□□□□□ -1.72
VPS50-220ENST00000544910 TMEM256-PLSCR3K7ERE1 68 aa4.32□□□□□ -1.72
VPS50-220ENST00000544910 FUSP35637 526 aaKnown RBP eCLIP4.32□□□□□ -1.72
VPS50-220ENST00000544910 MALRD1Q5VYJ5 2156 aa4.32□□□□□ -1.72
VPS50-220ENST00000544910 C10orf99Q6UWK7 81 aa4.32□□□□□ -1.72
VPS50-220ENST00000544910 ZNF561-AS1K7EIQ3 104 aa4.31□□□□□ -1.72
VPS50-220ENST00000544910 NDUFC1O43677 76 aa4.31□□□□□ -1.72
VPS50-220ENST00000544910 DAZ2Q13117 558 aaKnown RBP4.31□□□□□ -1.72
VPS50-220ENST00000544910 DAZ4Q86SG3 579 aaKnown RBP4.31□□□□□ -1.72
VPS50-220ENST00000544910 DCANP1Q8TF63 244 aa4.31□□□□□ -1.72
VPS50-220ENST00000544910 CLEC2BQ92478 149 aa4.31□□□□□ -1.72
VPS50-220ENST00000544910 DAZ3Q9NR90 486 aaKnown RBP4.31□□□□□ -1.72
VPS50-220ENST00000544910 CADP27708 2225 aa4.31□□□□□ -1.72
VPS50-220ENST00000544910 TMEM61Q8N0U2 210 aa4.31□□□□□ -1.72
VPS50-220ENST00000544910 NKAPP1Q8N9T2 125 aa4.31□□□□□ -1.72
VPS50-220ENST00000544910 ZMAT4Q9H898 229 aa4.31□□□□□ -1.72
VPS50-220ENST00000544910 IGHV1-58A0A0C4DH39 117 aa4.31□□□□□ -1.72
VPS50-220ENST00000544910 DEFB130BP0DP73 79 aa4.31□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 73.8 ms