RNA–Protein interactions for RNA: ENST00000541108.1

CLIP1-215, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 1,658 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-215ENST00000541108 PDZD11Q5EBL8 140 aa12.63□□□□□ -0.39
CLIP1-215ENST00000541108 DEFB121Q5J5C9 76 aa12.63□□□□□ -0.39
CLIP1-215ENST00000541108 FA2HQ7L5A8 372 aa12.63□□□□□ -0.39
CLIP1-215ENST00000541108 LINC01546A6NGU7 62 aa12.62□□□□□ -0.39
CLIP1-215ENST00000541108 FAM222AQ5U5X8 452 aa12.62□□□□□ -0.39
CLIP1-215ENST00000541108 Q8N8P6 123 aa12.62□□□□□ -0.39
CLIP1-215ENST00000541108 TMEM18Q96B42 140 aa12.62□□□□□ -0.39
CLIP1-215ENST00000541108 ST20Q9HBF5 79 aa12.62□□□□□ -0.39
CLIP1-215ENST00000541108 IGLV2-18A0A075B6J9 118 aa12.61□□□□□ -0.39
CLIP1-215ENST00000541108 IFITM10A6NMD0 228 aa12.61□□□□□ -0.39
CLIP1-215ENST00000541108 SBSPONQ8IVN8 264 aa12.61□□□□□ -0.39
CLIP1-215ENST00000541108 TEX48A0A1B0GUV7 120 aa12.61□□□□□ -0.39
CLIP1-215ENST00000541108 K7EMI3 77 aa12.61□□□□□ -0.39
CLIP1-215ENST00000541108 DEFB130BP0DP73 79 aa12.61□□□□□ -0.39
CLIP1-215ENST00000541108 DEFB130AP0DP74 79 aa12.61□□□□□ -0.39
CLIP1-215ENST00000541108 POLR2KP53803 58 aaKnown RBP12.61□□□□□ -0.39
CLIP1-215ENST00000541108 HIST1H2BLQ99880 126 aa12.61□□□□□ -0.39
CLIP1-215ENST00000541108 SMIM2Q9BVW6 85 aa12.61□□□□□ -0.39
CLIP1-215ENST00000541108 SPART-AS1P0CW21 52 aa12.6□□□□□ -0.39
CLIP1-215ENST00000541108 Q6ZSN1 163 aa12.6□□□□□ -0.39
CLIP1-215ENST00000541108 DNAJC30Q96LL9 226 aa12.6□□□□□ -0.39
CLIP1-215ENST00000541108 DEFB4AO15263 64 aa12.59□□□□□ -0.39
CLIP1-215ENST00000541108 FABP4P15090 132 aa12.59□□□□□ -0.39
CLIP1-215ENST00000541108 AMTP48728 403 aa12.59□□□□□ -0.39
CLIP1-215ENST00000541108 SPATA25Q9BR10 227 aa12.59□□□□□ -0.39
CLIP1-215ENST00000541108 TM2D3Q9BRN9 247 aa12.59□□□□□ -0.39
CLIP1-215ENST00000541108 TMEM70Q9BUB7 260 aa12.59□□□□□ -0.39
CLIP1-215ENST00000541108 TRBV10-1A0A0K0K1A3 114 aa12.58□□□□□ -0.4
CLIP1-215ENST00000541108 TRBV27A0A0K0K1C4 114 aa12.58□□□□□ -0.4
CLIP1-215ENST00000541108 TRBV6-4A0A1B0GX49 114 aa12.58□□□□□ -0.4
CLIP1-215ENST00000541108 SDHAF1A6NFY7 115 aa12.58□□□□□ -0.4
CLIP1-215ENST00000541108 VCYO14598 125 aa12.58□□□□□ -0.4
CLIP1-215ENST00000541108 C11orf68Q9H3H3 251 aaKnown RBP12.58□□□□□ -0.4
CLIP1-215ENST00000541108 RETNQ9HD89 108 aa12.57□□□□□ -0.4
CLIP1-215ENST00000541108 TRGV4A0A0C4DH28 118 aa12.57□□□□□ -0.4
CLIP1-215ENST00000541108 FHL2Q14192 279 aa12.57□□□□□ -0.4
CLIP1-215ENST00000541108 FAM19A2Q8N3H0 131 aa12.57□□□□□ -0.4
CLIP1-215ENST00000541108 TNFRSF18Q9Y5U5 241 aa12.57□□□□□ -0.4
CLIP1-215ENST00000541108 K7EQD1 137 aa12.56□□□□□ -0.4
CLIP1-215ENST00000541108 DAD1P61803 113 aa12.56□□□□□ -0.4
CLIP1-215ENST00000541108 SLC25A29Q8N8R3 303 aa12.56□□□□□ -0.4
CLIP1-215ENST00000541108 NEXN-AS1Q8NBZ9 246 aa12.56□□□□□ -0.4
CLIP1-215ENST00000541108 IGHV1-24A0A0C4DH33 117 aa12.55□□□□□ -0.4
CLIP1-215ENST00000541108 LAGE3Q14657 143 aa12.55□□□□□ -0.4
CLIP1-215ENST00000541108 KIR2DL4Q99706 377 aa12.55□□□□□ -0.4
CLIP1-215ENST00000541108 TCAPO15273 167 aa12.54□□□□□ -0.4
CLIP1-215ENST00000541108 P0DMU3 169 aa12.54□□□□□ -0.4
CLIP1-215ENST00000541108 FAM231AP0DMU4 169 aa12.54□□□□□ -0.4
CLIP1-215ENST00000541108 FAM231CP0DMU5 169 aa12.54□□□□□ -0.4
CLIP1-215ENST00000541108 ORMDL2Q53FV1 153 aa12.54□□□□□ -0.4
CLIP1-215ENST00000541108 CELA1Q9UNI1 258 aa12.54□□□□□ -0.4
CLIP1-215ENST00000541108 TRBV7-3A0A075B6L6 115 aa12.53□□□□□ -0.4
CLIP1-215ENST00000541108 I3L3M4 83 aa12.53□□□□□ -0.4
CLIP1-215ENST00000541108 RPL36AP83881 106 aaKnown RBP12.53□□□□□ -0.4
CLIP1-215ENST00000541108 RHOHQ15669 191 aa12.53□□□□□ -0.4
CLIP1-215ENST00000541108 PMCHL1Q16048 86 aa12.53□□□□□ -0.4
CLIP1-215ENST00000541108 OR10D4PQ8NGN7 298 aa12.53□□□□□ -0.4
CLIP1-215ENST00000541108 MRAPQ8TCY5 172 aa12.53□□□□□ -0.4
CLIP1-215ENST00000541108 RPL36ALQ969Q0 106 aaKnown RBP12.53□□□□□ -0.4
CLIP1-215ENST00000541108 Q9UF83 564 aa12.53□□□□□ -0.4
CLIP1-215ENST00000541108 HHLA3Q9XRX5 114 aa12.53□□□□□ -0.4
CLIP1-215ENST00000541108 HBDP02042 147 aa12.52□□□□□ -0.4
CLIP1-215ENST00000541108 ATP5G1P05496 136 aa12.52□□□□□ -0.4
CLIP1-215ENST00000541108 G0S2P27469 103 aa12.52□□□□□ -0.4
CLIP1-215ENST00000541108 FCER1GP30273 86 aa12.52□□□□□ -0.4
CLIP1-215ENST00000541108 AKR1D1P51857 326 aa12.52□□□□□ -0.4
CLIP1-215ENST00000541108 PRADC1Q9BSG0 188 aa12.52□□□□□ -0.4
CLIP1-215ENST00000541108 A0A096LNJ9 63 aa12.51□□□□□ -0.41
CLIP1-215ENST00000541108 LEPROTL1O95214 131 aa12.51□□□□□ -0.41
CLIP1-215ENST00000541108 ZMAT4Q9H898 229 aa12.51□□□□□ -0.41
CLIP1-215ENST00000541108 PRO0255Q9UI72 69 aa12.51□□□□□ -0.41
CLIP1-215ENST00000541108 DNHD1Q96M86 4753 aa12.51□□□□□ -0.41
CLIP1-215ENST00000541108 ZNRF2Q8NHG8 242 aa12.51□□□□□ -0.41
CLIP1-215ENST00000541108 LINC01549A6NIU2 74 aa12.49□□□□□ -0.41
CLIP1-215ENST00000541108 CRYBA4P53673 196 aa12.49□□□□□ -0.41
CLIP1-215ENST00000541108 NEGR1Q7Z3B1 354 aa12.49□□□□□ -0.41
CLIP1-215ENST00000541108 B9D2Q9BPU9 175 aa12.49□□□□□ -0.41
CLIP1-215ENST00000541108 HSPB8Q9UJY1 196 aa12.49□□□□□ -0.41
CLIP1-215ENST00000541108 A0A0J9YWU9 116 aa12.48□□□□□ -0.41
CLIP1-215ENST00000541108 NUDT3O95989 172 aa12.48□□□□□ -0.41
CLIP1-215ENST00000541108 C12orf74Q32Q52 190 aa12.48□□□□□ -0.41
CLIP1-215ENST00000541108 DAZ4Q86SG3 579 aaKnown RBP12.48□□□□□ -0.41
CLIP1-215ENST00000541108 DAZ3Q9NR90 486 aaKnown RBP12.48□□□□□ -0.41
CLIP1-215ENST00000541108 UBE2D3P61077 147 aa12.48□□□□□ -0.41
CLIP1-215ENST00000541108 UBE2D2P62837 147 aa12.48□□□□□ -0.41
CLIP1-215ENST00000541108 TSHBP01222 138 aa12.47□□□□□ -0.41
CLIP1-215ENST00000541108 BTF3P20290 206 aaKnown RBP12.47□□□□□ -0.41
CLIP1-215ENST00000541108 GAGE12JA6NER3 117 aa12.46□□□□□ -0.41
CLIP1-215ENST00000541108 GAGE1Q13065 139 aa12.46□□□□□ -0.41
CLIP1-215ENST00000541108 GAGE4Q13068 117 aa12.46□□□□□ -0.41
CLIP1-215ENST00000541108 GAGE5Q13069 117 aa12.46□□□□□ -0.41
CLIP1-215ENST00000541108 GAGE13Q4V321 117 aa12.46□□□□□ -0.41
CLIP1-215ENST00000541108 TOMM6Q96B49 74 aa12.45□□□□□ -0.42
CLIP1-215ENST00000541108 PAX4O43316 350 aa12.45□□□□□ -0.42
CLIP1-215ENST00000541108 LINC00694P0DN24 101 aa12.45□□□□□ -0.42
CLIP1-215ENST00000541108 COTL1Q14019 142 aa12.45□□□□□ -0.42
CLIP1-215ENST00000541108 C2orf66Q6UXQ4 117 aa12.45□□□□□ -0.42
CLIP1-215ENST00000541108 C11orf45Q8TAV5 145 aa12.45□□□□□ -0.42
CLIP1-215ENST00000541108 F5H768 121 aa12.44□□□□□ -0.42
CLIP1-215ENST00000541108 MAP1LC3CQ9BXW4 147 aa12.44□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms