RNA–Protein interactions for RNA: ENST00000537004.5

CLIP1-208, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,000 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-208ENST00000537004 NXT2Q9NPJ8 142 aaKnown RBP8.7□□□□□ -1.02
CLIP1-208ENST00000537004 STARD9Q9P2P6 4700 aa8.69□□□□□ -1.02
CLIP1-208ENST00000537004 IGHV1OR15-1A0A075B7D0 117 aa8.69□□□□□ -1.02
CLIP1-208ENST00000537004 TRAV25A0A0B4J276 109 aa8.69□□□□□ -1.02
CLIP1-208ENST00000537004 IGHV3-16A0A0C4DH30 117 aa8.69□□□□□ -1.02
CLIP1-208ENST00000537004 LINC01546A6NGU7 62 aa8.69□□□□□ -1.02
CLIP1-208ENST00000537004 HBDP02042 147 aa8.69□□□□□ -1.02
CLIP1-208ENST00000537004 FXYD7P58549 80 aa8.69□□□□□ -1.02
CLIP1-208ENST00000537004 FAM110AQ9BQ89 295 aa8.69□□□□□ -1.02
CLIP1-208ENST00000537004 C9orf85Q96MD7 179 aa8.68□□□□□ -1.02
CLIP1-208ENST00000537004 RYR3Q15413 4870 aa8.68□□□□□ -1.02
CLIP1-208ENST00000537004 TENM2Q9NT68 2774 aa8.68□□□□□ -1.02
CLIP1-208ENST00000537004 RNF151Q2KHN1 245 aa8.68□□□□□ -1.02
CLIP1-208ENST00000537004 ODF3L2Q3SX64 289 aa8.68□□□□□ -1.02
CLIP1-208ENST00000537004 PET117Q6UWS5 81 aa8.68□□□□□ -1.02
CLIP1-208ENST00000537004 Q8N8P6 123 aa8.68□□□□□ -1.02
CLIP1-208ENST00000537004 MDFICQ9P1T7 246 aa8.68□□□□□ -1.02
CLIP1-208ENST00000537004 IGLV2-18A0A075B6J9 118 aa8.67□□□□□ -1.02
CLIP1-208ENST00000537004 A6NJY4 79 aa8.67□□□□□ -1.02
CLIP1-208ENST00000537004 NACAE9PAV3 2078 aa8.67□□□□□ -1.02
CLIP1-208ENST00000537004 H0Y8G0 127 aa8.67□□□□□ -1.02
CLIP1-208ENST00000537004 MGPP08493 103 aa8.67□□□□□ -1.02
CLIP1-208ENST00000537004 RBMY1A1P0DJD3 496 aaKnown RBP8.66□□□□□ -1.02
CLIP1-208ENST00000537004 RBMY1CP0DJD4 496 aa8.66□□□□□ -1.02
CLIP1-208ENST00000537004 RBMY1FQ15415 496 aaKnown RBP8.66□□□□□ -1.02
CLIP1-208ENST00000537004 VAMP3Q15836 100 aa8.66□□□□□ -1.02
CLIP1-208ENST00000537004 MAJINQ3KP22 176 aa8.66□□□□□ -1.02
CLIP1-208ENST00000537004 Q6ZVH6 145 aa8.66□□□□□ -1.02
CLIP1-208ENST00000537004 SPATA25Q9BR10 227 aa8.66□□□□□ -1.02
CLIP1-208ENST00000537004 KIF25-AS1Q9Y6Z4 181 aa8.66□□□□□ -1.02
CLIP1-208ENST00000537004 SMIM17P0DL12 118 aa8.66□□□□□ -1.02
CLIP1-208ENST00000537004 OCIAD2Q56VL3 154 aa8.66□□□□□ -1.02
CLIP1-208ENST00000537004 RASL10AQ92737 203 aa8.66□□□□□ -1.02
CLIP1-208ENST00000537004 VPS25Q9BRG1 176 aa8.66□□□□□ -1.02
CLIP1-208ENST00000537004 CST9LQ9H4G1 147 aa8.66□□□□□ -1.02
CLIP1-208ENST00000537004 JPT2Q9H910 190 aa8.66□□□□□ -1.02
CLIP1-208ENST00000537004 TRGV11A0A075B6L2 103 aa8.65□□□□□ -1.02
CLIP1-208ENST00000537004 FCER1GP30273 86 aa8.65□□□□□ -1.02
CLIP1-208ENST00000537004 POM121L12Q8N7R1 296 aa8.65□□□□□ -1.02
CLIP1-208ENST00000537004 CBY3A6NI87 242 aa8.64□□□□□ -1.03
CLIP1-208ENST00000537004 LINC00315P59091 139 aa8.64□□□□□ -1.03
CLIP1-208ENST00000537004 LINC01545Q5VT33 79 aa8.64□□□□□ -1.03
CLIP1-208ENST00000537004 SYT8Q8NBV8 401 aa8.64□□□□□ -1.03
CLIP1-208ENST00000537004 RPL39LQ96EH5 51 aaKnown RBP8.64□□□□□ -1.03
CLIP1-208ENST00000537004 SMIM2Q9BVW6 85 aa8.64□□□□□ -1.03
CLIP1-208ENST00000537004 CSTL1Q9H114 145 aa8.64□□□□□ -1.03
CLIP1-208ENST00000537004 EDA2RQ9HAV5 297 aa8.64□□□□□ -1.03
CLIP1-208ENST00000537004 A0A087WWL8 130 aa8.64□□□□□ -1.03
CLIP1-208ENST00000537004 SUMO2P61956 95 aaKnown RBP8.64□□□□□ -1.03
CLIP1-208ENST00000537004 C20orf78Q9BR46 151 aa8.64□□□□□ -1.03
CLIP1-208ENST00000537004 ST20Q9HBF5 79 aa8.64□□□□□ -1.03
CLIP1-208ENST00000537004 HTN1P15515 57 aa8.63□□□□□ -1.03
CLIP1-208ENST00000537004 RPL35AP18077 110 aaKnown RBP8.63□□□□□ -1.03
CLIP1-208ENST00000537004 LAGE3Q14657 143 aa8.63□□□□□ -1.03
CLIP1-208ENST00000537004 MUC7Q8TAX7 377 aa8.63□□□□□ -1.03
CLIP1-208ENST00000537004 IFI27L1Q96BM0 104 aa8.63□□□□□ -1.03
CLIP1-208ENST00000537004 CLUHP3Q96NS8 147 aa8.63□□□□□ -1.03
CLIP1-208ENST00000537004 PMCHL2Q9BQD1 86 aa8.63□□□□□ -1.03
CLIP1-208ENST00000537004 TAX1BP3O14907 124 aa8.63□□□□□ -1.03
CLIP1-208ENST00000537004 PPP1R17O96001 155 aa8.63□□□□□ -1.03
CLIP1-208ENST00000537004 K7ERU9 68 aa8.62□□□□□ -1.03
CLIP1-208ENST00000537004 FAM74A4Q5TZK3 123 aa8.62□□□□□ -1.03
CLIP1-208ENST00000537004 STHQ8IWL8 128 aa8.62□□□□□ -1.03
CLIP1-208ENST00000537004 C18orf15Q96N68 181 aa8.62□□□□□ -1.03
CLIP1-208ENST00000537004 CHTOPQ9Y3Y2 248 aaKnown RBP8.62□□□□□ -1.03
CLIP1-208ENST00000537004 hDV102S1A0JD36 115 aa8.61□□□□□ -1.03
CLIP1-208ENST00000537004 F5H697 171 aa8.61□□□□□ -1.03
CLIP1-208ENST00000537004 INSP01308 110 aa8.61□□□□□ -1.03
CLIP1-208ENST00000537004 ZNF876PQ49A33 203 aa8.61□□□□□ -1.03
CLIP1-208ENST00000537004 SUMO4Q6EEV6 95 aa8.61□□□□□ -1.03
CLIP1-208ENST00000537004 ZFAND6Q6FIF0 208 aa8.61□□□□□ -1.03
CLIP1-208ENST00000537004 LYSTQ99698 3801 aa8.61□□□□□ -1.03
CLIP1-208ENST00000537004 DEFB135Q30KP9 77 aa8.61□□□□□ -1.03
CLIP1-208ENST00000537004 BVES-AS1Q5T3Y7 98 aa8.61□□□□□ -1.03
CLIP1-208ENST00000537004 CASC10Q5T4H9 136 aa8.61□□□□□ -1.03
CLIP1-208ENST00000537004 OVOL2Q9BRP0 275 aa8.61□□□□□ -1.03
CLIP1-208ENST00000537004 PRM2P04554 102 aa8.6□□□□□ -1.03
CLIP1-208ENST00000537004 CRYGDP07320 174 aa8.6□□□□□ -1.03
CLIP1-208ENST00000537004 LGALS9BQ3B8N2 356 aa8.6□□□□□ -1.03
CLIP1-208ENST00000537004 MPV17L2Q567V2 206 aa8.6□□□□□ -1.03
CLIP1-208ENST00000537004 LGALS9CQ6DKI2 356 aa8.6□□□□□ -1.03
CLIP1-208ENST00000537004 TRPT1Q86TN4 253 aaKnown RBP8.6□□□□□ -1.03
CLIP1-208ENST00000537004 HSBP1L1C9JCN9 74 aa8.59□□□□□ -1.03
CLIP1-208ENST00000537004 C3orf84H3BNL1 204 aa8.59□□□□□ -1.03
CLIP1-208ENST00000537004 K7EMI3 77 aa8.59□□□□□ -1.03
CLIP1-208ENST00000537004 ZNF56Q15929 161 aa8.59□□□□□ -1.03
CLIP1-208ENST00000537004 ORMDL2Q53FV1 153 aa8.59□□□□□ -1.03
CLIP1-208ENST00000537004 LINC01587Q99440 93 aa8.59□□□□□ -1.03
CLIP1-208ENST00000537004 LINC00467Q9BRT7 94 aa8.59□□□□□ -1.03
CLIP1-208ENST00000537004 XCL2Q9UBD3 114 aa8.59□□□□□ -1.03
CLIP1-208ENST00000537004 NUDT3O95989 172 aa8.59□□□□□ -1.03
CLIP1-208ENST00000537004 CMC4P56277 68 aaPredicted RBP8.59□□□□□ -1.03
CLIP1-208ENST00000537004 ZNF415Q09FC8 603 aa8.59□□□□□ -1.03
CLIP1-208ENST00000537004 SLC25A34Q6PIV7 304 aa8.59□□□□□ -1.03
CLIP1-208ENST00000537004 CIDEAO60543 219 aa8.58□□□□□ -1.04
CLIP1-208ENST00000537004 GAGE12BA1L429 117 aa8.58□□□□□ -1.04
CLIP1-208ENST00000537004 TMEM238C9JI98 176 aa8.58□□□□□ -1.04
CLIP1-208ENST00000537004 ATP5LO75964 103 aa8.58□□□□□ -1.04
CLIP1-208ENST00000537004 APOC4P55056 127 aa8.58□□□□□ -1.04
CLIP1-208ENST00000537004 RPL32P62910 135 aaKnown RBP8.58□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 54.7 ms