RNA–Protein interactions for RNA: ENST00000520755.5

LSM1-203, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best) BASIC

Gene LSM1, Length 975 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-203ENST00000520755 RHOHQ15669 191 aa10.65□□□□□ -0.7
LSM1-203ENST00000520755 COX19Q49B96 90 aa10.65□□□□□ -0.7
LSM1-203ENST00000520755 NEXN-AS1Q8NBZ9 246 aa10.65□□□□□ -0.7
LSM1-203ENST00000520755 RPL39LQ96EH5 51 aaKnown RBP10.65□□□□□ -0.7
LSM1-203ENST00000520755 MRAP2Q96G30 205 aa10.65□□□□□ -0.7
LSM1-203ENST00000520755 ALMS1Q8TCU4 4167 aa10.65□□□□□ -0.7
LSM1-203ENST00000520755 KMT2CQ8NEZ4 4911 aaKnown RBP10.65□□□□□ -0.7
LSM1-203ENST00000520755 SACSQ9NZJ4 4579 aa10.65□□□□□ -0.71
LSM1-203ENST00000520755 LY6G6CO95867 125 aa10.64□□□□□ -0.71
LSM1-203ENST00000520755 MT-ND6P03923 174 aa10.64□□□□□ -0.71
LSM1-203ENST00000520755 NRACQ8N912 160 aa10.64□□□□□ -0.71
LSM1-203ENST00000520755 LINC00476Q8WZB0 136 aa10.64□□□□□ -0.71
LSM1-203ENST00000520755 MRPL18Q9H0U6 180 aaKnown RBP10.64□□□□□ -0.71
LSM1-203ENST00000520755 LCE6AA0A183 80 aa10.63□□□□□ -0.71
LSM1-203ENST00000520755 D6R8Y8 96 aa10.63□□□□□ -0.71
LSM1-203ENST00000520755 GYPEP15421 78 aa10.63□□□□□ -0.71
LSM1-203ENST00000520755 KIAA1644Q3SXP7 199 aa10.63□□□□□ -0.71
LSM1-203ENST00000520755 FRZBQ92765 325 aa10.63□□□□□ -0.71
LSM1-203ENST00000520755 ICOSQ9Y6W8 199 aa10.63□□□□□ -0.71
LSM1-203ENST00000520755 DNAH1Q9P2D7 4330 aa10.63□□□□□ -0.71
LSM1-203ENST00000520755 LYSTQ99698 3801 aa10.62□□□□□ -0.71
LSM1-203ENST00000520755 A0A096LPF7 62 aa10.62□□□□□ -0.71
LSM1-203ENST00000520755 TRBV10-1A0A0K0K1A3 114 aa10.62□□□□□ -0.71
LSM1-203ENST00000520755 APCSP02743 223 aa10.62□□□□□ -0.71
LSM1-203ENST00000520755 RAB5AP20339 215 aa10.62□□□□□ -0.71
LSM1-203ENST00000520755 PRADC1Q9BSG0 188 aa10.62□□□□□ -0.71
LSM1-203ENST00000520755 GAGE12JA6NER3 117 aa10.61□□□□□ -0.71
LSM1-203ENST00000520755 H7C1H1 209 aa10.61□□□□□ -0.71
LSM1-203ENST00000520755 PHOX2AO14813 284 aa10.61□□□□□ -0.71
LSM1-203ENST00000520755 NPYP01303 97 aa10.61□□□□□ -0.71
LSM1-203ENST00000520755 GAGE1Q13065 139 aa10.61□□□□□ -0.71
LSM1-203ENST00000520755 GAGE4Q13068 117 aa10.61□□□□□ -0.71
LSM1-203ENST00000520755 GAGE5Q13069 117 aa10.61□□□□□ -0.71
LSM1-203ENST00000520755 GAGE13Q4V321 117 aa10.61□□□□□ -0.71
LSM1-203ENST00000520755 LGALS9CQ6DKI2 356 aa10.61□□□□□ -0.71
LSM1-203ENST00000520755 UBE2DNLQ8IWF7 75 aa10.61□□□□□ -0.71
LSM1-203ENST00000520755 TRAPPC1Q9Y5R8 145 aa10.61□□□□□ -0.71
LSM1-203ENST00000520755 HYDINQ4G0P3 5121 aa10.6□□□□□ -0.71
LSM1-203ENST00000520755 SRIP30626 198 aa10.6□□□□□ -0.71
LSM1-203ENST00000520755 CKS2P33552 79 aa10.6□□□□□ -0.71
LSM1-203ENST00000520755 FABP9Q0Z7S8 132 aa10.6□□□□□ -0.71
LSM1-203ENST00000520755 OR10J3Q5JRS4 329 aa10.6□□□□□ -0.71
LSM1-203ENST00000520755 ORMDL3Q8N138 153 aa10.6□□□□□ -0.71
LSM1-203ENST00000520755 ZNRF2Q8NHG8 242 aa10.6□□□□□ -0.71
LSM1-203ENST00000520755 NIT2Q9NQR4 276 aa10.6□□□□□ -0.71
LSM1-203ENST00000520755 VPS13DQ5THJ4 4388 aa10.6□□□□□ -0.71
LSM1-203ENST00000520755 TRBV7-3A0A075B6L6 115 aa10.59□□□□□ -0.71
LSM1-203ENST00000520755 TRBV6-5A0A0K0K1A5 114 aa10.59□□□□□ -0.71
LSM1-203ENST00000520755 PPBPP02775 128 aa10.59□□□□□ -0.71
LSM1-203ENST00000520755 UBE2D3P61077 147 aa10.59□□□□□ -0.71
LSM1-203ENST00000520755 UBE2D2P62837 147 aa10.59□□□□□ -0.71
LSM1-203ENST00000520755 MRPL23Q16540 153 aaKnown RBP10.59□□□□□ -0.71
LSM1-203ENST00000520755 PRELID3AQ96N28 172 aa10.59□□□□□ -0.71
LSM1-203ENST00000520755 TNFRSF6BO95407 300 aa10.58□□□□□ -0.72
LSM1-203ENST00000520755 RPL36AP83881 106 aaKnown RBP10.58□□□□□ -0.72
LSM1-203ENST00000520755 RPL36ALQ969Q0 106 aaKnown RBP10.58□□□□□ -0.72
LSM1-203ENST00000520755 DNAJC30Q96LL9 226 aa10.58□□□□□ -0.72
LSM1-203ENST00000520755 ALKBH7Q9BT30 221 aaPredicted RBP10.58□□□□□ -0.72
LSM1-203ENST00000520755 TRGC2P03986 189 aa10.57□□□□□ -0.72
LSM1-203ENST00000520755 CCL18P55774 89 aa10.57□□□□□ -0.72
LSM1-203ENST00000520755 RYR2Q92736 4967 aa10.57□□□□□ -0.72
LSM1-203ENST00000520755 IGHV3-38A0A0C4DH36 116 aa10.56□□□□□ -0.72
LSM1-203ENST00000520755 SDHAF1A6NFY7 115 aa10.56□□□□□ -0.72
LSM1-203ENST00000520755 POLR2KP53803 58 aaKnown RBP10.56□□□□□ -0.72
LSM1-203ENST00000520755 SUMO2P61956 95 aaKnown RBP10.56□□□□□ -0.72
LSM1-203ENST00000520755 ESRGQ1W209 222 aa10.56□□□□□ -0.72
LSM1-203ENST00000520755 NEGR1Q7Z3B1 354 aa10.56□□□□□ -0.72
LSM1-203ENST00000520755 SREK1IP1Q8N9Q2 155 aaPredicted RBP10.56□□□□□ -0.72
LSM1-203ENST00000520755 TMEM70Q9BUB7 260 aa10.56□□□□□ -0.72
LSM1-203ENST00000520755 LINC00588Q9Y4M8 146 aa10.56□□□□□ -0.72
LSM1-203ENST00000520755 TNFRSF18Q9Y5U5 241 aa10.56□□□□□ -0.72
LSM1-203ENST00000520755 ST20Q9HBF5 79 aa10.55□□□□□ -0.72
LSM1-203ENST00000520755 LAMTOR2Q9Y2Q5 125 aa10.55□□□□□ -0.72
LSM1-203ENST00000520755 PPP1R17O96001 155 aa10.54□□□□□ -0.72
LSM1-203ENST00000520755 LYPD5Q6UWN5 251 aa10.54□□□□□ -0.72
LSM1-203ENST00000520755 SH2D6Q7Z4S9 175 aa10.54□□□□□ -0.72
LSM1-203ENST00000520755 ATP6V0E2Q8NHE4 81 aa10.54□□□□□ -0.72
LSM1-203ENST00000520755 DEFB104AQ8WTQ1 72 aa10.54□□□□□ -0.72
LSM1-203ENST00000520755 C20orf78Q9BR46 151 aa10.54□□□□□ -0.72
LSM1-203ENST00000520755 SMIM2Q9BVW6 85 aa10.54□□□□□ -0.72
LSM1-203ENST00000520755 RYR3Q15413 4870 aa10.53□□□□□ -0.72
LSM1-203ENST00000520755 IGLV2-18A0A075B6J9 118 aa10.53□□□□□ -0.72
LSM1-203ENST00000520755 TRBV27A0A0K0K1C4 114 aa10.53□□□□□ -0.72
LSM1-203ENST00000520755 PRSS47A8MTI9 375 aa10.53□□□□□ -0.72
LSM1-203ENST00000520755 RPL32P62910 135 aaKnown RBP10.53□□□□□ -0.72
LSM1-203ENST00000520755 IQCJQ1A5X6 159 aa10.53□□□□□ -0.72
LSM1-203ENST00000520755 C18orf32Q8TCD1 76 aa10.53□□□□□ -0.72
LSM1-203ENST00000520755 NTM-AS1Q6ZSK4 140 aa10.52□□□□□ -0.73
LSM1-203ENST00000520755 DAZ4Q86SG3 579 aaKnown RBP10.52□□□□□ -0.73
LSM1-203ENST00000520755 DAZ3Q9NR90 486 aaKnown RBP10.52□□□□□ -0.73
LSM1-203ENST00000520755 MRPS16Q9Y3D3 137 aaKnown RBP10.52□□□□□ -0.73
LSM1-203ENST00000520755 TSHBP01222 138 aa10.51□□□□□ -0.73
LSM1-203ENST00000520755 GTSF1LQ9H1H1 148 aa10.51□□□□□ -0.73
LSM1-203ENST00000520755 MAP1LC3AQ9H492 121 aa10.51□□□□□ -0.73
LSM1-203ENST00000520755 LOC389332A0A1B0GUA5 103 aa10.5□□□□□ -0.73
LSM1-203ENST00000520755 TIRAPP58753 221 aa10.5□□□□□ -0.73
LSM1-203ENST00000520755 URB1-AS1Q96HZ7 61 aa10.5□□□□□ -0.73
LSM1-203ENST00000520755 I3L3M4 83 aa10.49□□□□□ -0.73
LSM1-203ENST00000520755 IFI27P40305 119 aaPredicted RBP10.49□□□□□ -0.73
LSM1-203ENST00000520755 VCYO14598 125 aa10.48□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 89.9 ms