RNA–Protein interactions for RNA: ENST00000446625.6

LIMCH1-204, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 5

Gene LIMCH1, Length 789 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-204ENST00000446625 PRNTQ86SH4 94 aa4.78□□□□□ -1.64
LIMCH1-204ENST00000446625 WFDC1Q9HC57 220 aa4.78□□□□□ -1.64
LIMCH1-204ENST00000446625 SERTM2A0A1B0GWG4 89 aa4.77□□□□□ -1.65
LIMCH1-204ENST00000446625 HMSDA8MTL9 139 aa4.77□□□□□ -1.65
LIMCH1-204ENST00000446625 NDUFS6O75380 124 aaKnown RBP4.77□□□□□ -1.65
LIMCH1-204ENST00000446625 RAB5CP51148 216 aa4.77□□□□□ -1.65
LIMCH1-204ENST00000446625 FLI1Q01543 452 aaPredicted RBP4.77□□□□□ -1.65
LIMCH1-204ENST00000446625 REG3AQ06141 175 aa4.77□□□□□ -1.65
LIMCH1-204ENST00000446625 Q6ZRP5 223 aa4.77□□□□□ -1.65
LIMCH1-204ENST00000446625 NTM-AS1Q6ZSK4 140 aa4.77□□□□□ -1.65
LIMCH1-204ENST00000446625 C9orf62Q8N4C0 152 aa4.77□□□□□ -1.65
LIMCH1-204ENST00000446625 NEXN-AS1Q8NBZ9 246 aa4.77□□□□□ -1.65
LIMCH1-204ENST00000446625 SCGB1C1Q8TD33 95 aa4.77□□□□□ -1.65
LIMCH1-204ENST00000446625 TNFSF18Q9UNG2 199 aa4.77□□□□□ -1.65
LIMCH1-204ENST00000446625 HSPB11Q9Y547 144 aa4.77□□□□□ -1.65
LIMCH1-204ENST00000446625 FXYD6-FXYD2A0A087WZ82 144 aa4.76□□□□□ -1.65
LIMCH1-204ENST00000446625 A0A096LNI7 61 aa4.76□□□□□ -1.65
LIMCH1-204ENST00000446625 GRIFINA4D1Z8 144 aa4.76□□□□□ -1.65
LIMCH1-204ENST00000446625 B4DEV8 164 aa4.76□□□□□ -1.65
LIMCH1-204ENST00000446625 K7EQM0 130 aa4.76□□□□□ -1.65
LIMCH1-204ENST00000446625 M0R381 172 aa4.76□□□□□ -1.65
LIMCH1-204ENST00000446625 IFNA7P01567 189 aa4.76□□□□□ -1.65
LIMCH1-204ENST00000446625 ARL14EPLP0DKL9 152 aa4.76□□□□□ -1.65
LIMCH1-204ENST00000446625 RPS10P46783 165 aaKnown RBP4.76□□□□□ -1.65
LIMCH1-204ENST00000446625 PQLC2Q6ZP29 291 aa4.76□□□□□ -1.65
LIMCH1-204ENST00000446625 C5orf17Q8NAS9 161 aa4.76□□□□□ -1.65
LIMCH1-204ENST00000446625 SSBP4Q9BWG4 385 aaPredicted RBP4.76□□□□□ -1.65
LIMCH1-204ENST00000446625 TRAV8-4A0A0B4J246 113 aa4.75□□□□□ -1.65
LIMCH1-204ENST00000446625 TRAV26-2A0A0B4J265 109 aa4.75□□□□□ -1.65
LIMCH1-204ENST00000446625 TRAV34A0A0B4J273 112 aa4.75□□□□□ -1.65
LIMCH1-204ENST00000446625 A0A1W2PPV4 95 aa4.75□□□□□ -1.65
LIMCH1-204ENST00000446625 FABP5P3A8MUU1 101 aa4.75□□□□□ -1.65
LIMCH1-204ENST00000446625 M0R036 132 aa4.75□□□□□ -1.65
LIMCH1-204ENST00000446625 ARPC5O15511 151 aa4.75□□□□□ -1.65
LIMCH1-204ENST00000446625 P01737 135 aa4.75□□□□□ -1.65
LIMCH1-204ENST00000446625 H2AFB1P0C5Y9 115 aa4.75□□□□□ -1.65
LIMCH1-204ENST00000446625 PET100P0DJ07 73 aa4.75□□□□□ -1.65
LIMCH1-204ENST00000446625 RPL12P30050 165 aaKnown RBP4.75□□□□□ -1.65
LIMCH1-204ENST00000446625 PRR4Q16378 134 aa4.75□□□□□ -1.65
LIMCH1-204ENST00000446625 SAPCD1Q5SSQ6 148 aa4.75□□□□□ -1.65
LIMCH1-204ENST00000446625 DNLZQ5SXM8 178 aa4.75□□□□□ -1.65
LIMCH1-204ENST00000446625 PRR27Q6MZM9 219 aa4.75□□□□□ -1.65
LIMCH1-204ENST00000446625 ZNF664Q8N3J9 261 aa4.75□□□□□ -1.65
LIMCH1-204ENST00000446625 PRR26Q8N8Z3 221 aa4.75□□□□□ -1.65
LIMCH1-204ENST00000446625 C15orf56Q8N910 161 aa4.75□□□□□ -1.65
LIMCH1-204ENST00000446625 C20orf203Q8NBC4 194 aa4.75□□□□□ -1.65
LIMCH1-204ENST00000446625 AQP10Q96PS8 301 aa4.75□□□□□ -1.65
LIMCH1-204ENST00000446625 GFRA4Q9GZZ7 299 aa4.75□□□□□ -1.65
LIMCH1-204ENST00000446625 MRPL18Q9H0U6 180 aaKnown RBP4.75□□□□□ -1.65
LIMCH1-204ENST00000446625 PSORS1C2Q9UIG4 136 aa4.75□□□□□ -1.65
LIMCH1-204ENST00000446625 PHLDA3Q9Y5J5 127 aa4.75□□□□□ -1.65
LIMCH1-204ENST00000446625 KRBOX1C9JBD0 128 aa4.74□□□□□ -1.65
LIMCH1-204ENST00000446625 GZMBP10144 247 aa4.74□□□□□ -1.65
LIMCH1-204ENST00000446625 CDC34P49427 236 aaPredicted RBP4.74□□□□□ -1.65
LIMCH1-204ENST00000446625 RAB4BP61018 213 aa4.74□□□□□ -1.65
LIMCH1-204ENST00000446625 CACNG7P62955 275 aa4.74□□□□□ -1.65
LIMCH1-204ENST00000446625 ZNF345Q14585 488 aa4.74□□□□□ -1.65
LIMCH1-204ENST00000446625 HIGD2BQ4VC39 106 aa4.74□□□□□ -1.65
LIMCH1-204ENST00000446625 TMUB2Q71RG4 321 aa4.74□□□□□ -1.65
LIMCH1-204ENST00000446625 KCNRGQ8N5I3 272 aa4.74□□□□□ -1.65
LIMCH1-204ENST00000446625 SREK1IP1Q8N9Q2 155 aaPredicted RBP4.74□□□□□ -1.65
LIMCH1-204ENST00000446625 DERL1Q9BUN8 251 aa4.74□□□□□ -1.65
LIMCH1-204ENST00000446625 EPDR1Q9UM22 224 aa4.74□□□□□ -1.65
LIMCH1-204ENST00000446625 IGLV4-60A0A075B6I1 120 aa4.73□□□□□ -1.65
LIMCH1-204ENST00000446625 TRBV25-1A0A075B6N4 114 aa4.73□□□□□ -1.65
LIMCH1-204ENST00000446625 TRBV6-1A0A0K0K1D8 114 aa4.73□□□□□ -1.65
LIMCH1-204ENST00000446625 TPT1P13693 172 aaKnown RBP4.73□□□□□ -1.65
LIMCH1-204ENST00000446625 CRIP1P50238 77 aa4.73□□□□□ -1.65
LIMCH1-204ENST00000446625 SUMO1P63165 101 aaKnown RBP4.73□□□□□ -1.65
LIMCH1-204ENST00000446625 IFITM2Q01629 132 aa4.73□□□□□ -1.65
LIMCH1-204ENST00000446625 ZNF56Q15929 161 aa4.73□□□□□ -1.65
LIMCH1-204ENST00000446625 TMEM97Q5BJF2 176 aa4.73□□□□□ -1.65
LIMCH1-204ENST00000446625 ZFP82Q8N141 532 aa4.73□□□□□ -1.65
LIMCH1-204ENST00000446625 CRCT1Q9UGL9 99 aa4.73□□□□□ -1.65
LIMCH1-204ENST00000446625 ARL2-SNX15V9GYD0 113 aa4.73□□□□□ -1.65
LIMCH1-204ENST00000446625 TMSB15BA0A087X1C1 80 aa4.72□□□□□ -1.65
LIMCH1-204ENST00000446625 GAGE12HA6NDE8 117 aa4.72□□□□□ -1.65
LIMCH1-204ENST00000446625 BCL2L11O43521 198 aa4.72□□□□□ -1.65
LIMCH1-204ENST00000446625 SH2D1AO60880 128 aa4.72□□□□□ -1.65
LIMCH1-204ENST00000446625 GCHFRP30047 84 aa4.72□□□□□ -1.65
LIMCH1-204ENST00000446625 UBE2G2P60604 165 aa4.72□□□□□ -1.65
LIMCH1-204ENST00000446625 IQCJQ1A5X6 159 aa4.72□□□□□ -1.65
LIMCH1-204ENST00000446625 CFAP161Q6P656 301 aa4.72□□□□□ -1.65
LIMCH1-204ENST00000446625 INO80EQ8NBZ0 244 aaPredicted RBP4.72□□□□□ -1.65
LIMCH1-204ENST00000446625 SUN5Q8TC36 379 aa4.72□□□□□ -1.65
LIMCH1-204ENST00000446625 CYTL1Q9NRR1 136 aa4.72□□□□□ -1.65
LIMCH1-204ENST00000446625 IGHV1-24A0A0C4DH33 117 aa4.71□□□□□ -1.66
LIMCH1-204ENST00000446625 RAB24Q969Q5 203 aa4.71□□□□□ -1.66
LIMCH1-204ENST00000446625 LINC00474Q9P2X8 69 aa4.71□□□□□ -1.66
LIMCH1-204ENST00000446625 GVQW2A0A096LPI5 108 aaPredicted RBP4.7□□□□□ -1.66
LIMCH1-204ENST00000446625 A0A1B0GUV1 79 aa4.7□□□□□ -1.66
LIMCH1-204ENST00000446625 KANTRA0A1W2PQU2 76 aa4.7□□□□□ -1.66
LIMCH1-204ENST00000446625 F5H697 171 aa4.7□□□□□ -1.66
LIMCH1-204ENST00000446625 STAG3L2P0CL84 134 aa4.7□□□□□ -1.66
LIMCH1-204ENST00000446625 STAG3L3P0CL85 134 aa4.7□□□□□ -1.66
LIMCH1-204ENST00000446625 ATP6V0CP27449 155 aa4.7□□□□□ -1.66
LIMCH1-204ENST00000446625 SULT1A2P50226 295 aa4.7□□□□□ -1.66
LIMCH1-204ENST00000446625 XP32Q5T750 250 aa4.7□□□□□ -1.66
LIMCH1-204ENST00000446625 Q86TA4 180 aa4.7□□□□□ -1.66
LIMCH1-204ENST00000446625 SLC51BQ86UW2 128 aa4.7□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms