RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 K7EQG2 157 aa9.91□□□□□ -0.82
VPS54-203ENST00000409558 A0A1W2PPM0 123 aa9.91□□□□□ -0.82
VPS54-203ENST00000409558 CEND1Q8N111 149 aa9.91□□□□□ -0.82
VPS54-203ENST00000409558 TOMM6Q96B49 74 aa9.91□□□□□ -0.82
VPS54-203ENST00000409558 PLNP26678 52 aa9.91□□□□□ -0.82
VPS54-203ENST00000409558 SPXQ9BT56 116 aa9.91□□□□□ -0.82
VPS54-203ENST00000409558 CRIP2P52943 208 aaPredicted RBP9.91□□□□□ -0.82
VPS54-203ENST00000409558 SYT8Q8NBV8 401 aa9.91□□□□□ -0.82
VPS54-203ENST00000409558 RBX1P62877 108 aa9.9□□□□□ -0.82
VPS54-203ENST00000409558 DEFB113Q30KQ7 82 aa9.9□□□□□ -0.82
VPS54-203ENST00000409558 ZNF479Q96JC4 524 aa9.9□□□□□ -0.82
VPS54-203ENST00000409558 WFDC10AQ9H1F0 79 aa9.9□□□□□ -0.82
VPS54-203ENST00000409558 UBR5O95071 2799 aaPredicted RBP9.9□□□□□ -0.82
VPS54-203ENST00000409558 VCYO14598 125 aa9.9□□□□□ -0.83
VPS54-203ENST00000409558 NEXN-AS1Q8NBZ9 246 aa9.9□□□□□ -0.83
VPS54-203ENST00000409558 IGKV3OR2-268A0A0C4DH90 116 aa9.89□□□□□ -0.83
VPS54-203ENST00000409558 A8MZ25 164 aa9.89□□□□□ -0.83
VPS54-203ENST00000409558 IGKV2D-29A0A075B6S2 120 aaPredicted RBP9.89□□□□□ -0.83
VPS54-203ENST00000409558 MYMXA0A1B0GTQ4 84 aa9.89□□□□□ -0.83
VPS54-203ENST00000409558 IGKV2-29A2NJV5 120 aaPredicted RBP9.89□□□□□ -0.83
VPS54-203ENST00000409558 DSCR9P59020 149 aa9.89□□□□□ -0.83
VPS54-203ENST00000409558 LINC00315P59091 139 aa9.89□□□□□ -0.83
VPS54-203ENST00000409558 SH2D6Q7Z4S9 175 aa9.89□□□□□ -0.83
VPS54-203ENST00000409558 ZNF418Q8TF45 676 aaPredicted RBP9.89□□□□□ -0.83
VPS54-203ENST00000409558 ATRQ13535 2644 aa9.89□□□□□ -0.83
VPS54-203ENST00000409558 IGHV4-4A0A075B6R2 117 aa9.89□□□□□ -0.83
VPS54-203ENST00000409558 TSHBP01222 138 aa9.89□□□□□ -0.83
VPS54-203ENST00000409558 PRSS2P07478 247 aa9.89□□□□□ -0.83
VPS54-203ENST00000409558 GATA3P23771 443 aa9.89□□□□□ -0.83
VPS54-203ENST00000409558 C20orf78Q9BR46 151 aa9.89□□□□□ -0.83
VPS54-203ENST00000409558 A0A0J9YXV3 536 aa9.88□□□□□ -0.83
VPS54-203ENST00000409558 Q6YL49 198 aa9.88□□□□□ -0.83
VPS54-203ENST00000409558 SPAG8Q99932 426 aaPredicted RBP9.88□□□□□ -0.83
VPS54-203ENST00000409558 UNC79Q9P2D8 2635 aa9.88□□□□□ -0.83
VPS54-203ENST00000409558 K7EMT4 169 aa9.88□□□□□ -0.83
VPS54-203ENST00000409558 C12orf74Q32Q52 190 aa9.88□□□□□ -0.83
VPS54-203ENST00000409558 PGPEP1Q9NXJ5 209 aa9.88□□□□□ -0.83
VPS54-203ENST00000409558 RPL35AP18077 110 aaKnown RBP9.88□□□□□ -0.83
VPS54-203ENST00000409558 ZMAT4Q9H898 229 aa9.88□□□□□ -0.83
VPS54-203ENST00000409558 YAE1D1Q9NRH1 226 aa9.88□□□□□ -0.83
VPS54-203ENST00000409558 AKAP9Q99996 3911 aa9.88□□□□□ -0.83
VPS54-203ENST00000409558 LINC01549A6NIU2 74 aa9.87□□□□□ -0.83
VPS54-203ENST00000409558 CRYGDP07320 174 aa9.87□□□□□ -0.83
VPS54-203ENST00000409558 NSUN5P1Q3KNT7 163 aa9.87□□□□□ -0.83
VPS54-203ENST00000409558 TRAV2A0A0B4J234 112 aa9.87□□□□□ -0.83
VPS54-203ENST00000409558 K7EP34 96 aa9.87□□□□□ -0.83
VPS54-203ENST00000409558 RAX2Q96IS3 184 aa9.87□□□□□ -0.83
VPS54-203ENST00000409558 TNFRSF18Q9Y5U5 241 aa9.87□□□□□ -0.83
VPS54-203ENST00000409558 WFDC2Q14508 124 aa9.87□□□□□ -0.83
VPS54-203ENST00000409558 SMR3AQ99954 134 aa9.87□□□□□ -0.83
VPS54-203ENST00000409558 KIF25-AS1Q9Y6Z4 181 aa9.87□□□□□ -0.83
VPS54-203ENST00000409558 LINC01619G3V211 115 aa9.86□□□□□ -0.83
VPS54-203ENST00000409558 ETDBQ3ZM63 59 aa9.86□□□□□ -0.83
VPS54-203ENST00000409558 RBMY1BA6NDE4 496 aaKnown RBP9.86□□□□□ -0.83
VPS54-203ENST00000409558 RBMY1EA6NEQ0 496 aaKnown RBP9.86□□□□□ -0.83
VPS54-203ENST00000409558 RBMY1DP0C7P1 496 aaKnown RBP9.86□□□□□ -0.83
VPS54-203ENST00000409558 CD28P10747 220 aa9.86□□□□□ -0.83
VPS54-203ENST00000409558 PLA2G2AP14555 144 aa9.86□□□□□ -0.83
VPS54-203ENST00000409558 Q6ZSN1 163 aa9.86□□□□□ -0.83
VPS54-203ENST00000409558 ZNRF2Q8NHG8 242 aa9.86□□□□□ -0.83
VPS54-203ENST00000409558 ZNF625Q96I27 306 aaPredicted RBP9.86□□□□□ -0.83
VPS54-203ENST00000409558 FAM19A4Q96LR4 140 aa9.86□□□□□ -0.83
VPS54-203ENST00000409558 TSPEAR-AS2P59090 65 aa9.86□□□□□ -0.83
VPS54-203ENST00000409558 TRAV8-3A0A0A6YYJ7 113 aa9.86□□□□□ -0.83
VPS54-203ENST00000409558 M0QY20 66 aa9.86□□□□□ -0.83
VPS54-203ENST00000409558 ELANEP08246 267 aa9.86□□□□□ -0.83
VPS54-203ENST00000409558 PMVKQ15126 192 aa9.86□□□□□ -0.83
VPS54-203ENST00000409558 MORN3Q6PF18 240 aaPredicted RBP9.86□□□□□ -0.83
VPS54-203ENST00000409558 VCX2Q9H322 139 aa9.86□□□□□ -0.83
VPS54-203ENST00000409558 TRGV1A0A0A0MS02 117 aa9.85□□□□□ -0.83
VPS54-203ENST00000409558 LGALS3P17931 250 aaKnown RBP9.85□□□□□ -0.83
VPS54-203ENST00000409558 AZU1P20160 251 aa9.85□□□□□ -0.83
VPS54-203ENST00000409558 SCGB1C2P0DMR2 95 aa9.85□□□□□ -0.83
VPS54-203ENST00000409558 KLK9Q2XQG4 91 aa9.85□□□□□ -0.83
VPS54-203ENST00000409558 A0A096LNT2 108 aa9.85□□□□□ -0.83
VPS54-203ENST00000409558 K7ERU9 68 aa9.85□□□□□ -0.83
VPS54-203ENST00000409558 PSMB2P49721 201 aa9.85□□□□□ -0.83
VPS54-203ENST00000409558 POLR2KP53803 58 aaKnown RBP9.84□□□□□ -0.83
VPS54-203ENST00000409558 TEX48A0A1B0GUV7 120 aa9.84□□□□□ -0.83
VPS54-203ENST00000409558 IGLL5B9A064 214 aa9.84□□□□□ -0.83
VPS54-203ENST00000409558 HERVK_113P61574 105 aa9.84□□□□□ -0.83
VPS54-203ENST00000409558 SIVA1O15304 175 aa9.83□□□□□ -0.84
VPS54-203ENST00000409558 Q1RN00 199 aa9.83□□□□□ -0.84
VPS54-203ENST00000409558 CR1P17927 2039 aa9.83□□□□□ -0.84
VPS54-203ENST00000409558 FOXI2Q6ZQN5 318 aa9.83□□□□□ -0.84
VPS54-203ENST00000409558 CITED2Q99967 270 aaPredicted RBP9.83□□□□□ -0.84
VPS54-203ENST00000409558 H3BMM0 161 aa9.83□□□□□ -0.84
VPS54-203ENST00000409558 DGAT2L7PQ6IED9 249 aa9.83□□□□□ -0.84
VPS54-203ENST00000409558 Q6ZSV7 163 aa9.83□□□□□ -0.84
VPS54-203ENST00000409558 DAND5Q8N907 189 aa9.83□□□□□ -0.84
VPS54-203ENST00000409558 ATP6V0BQ99437 205 aa9.83□□□□□ -0.84
VPS54-203ENST00000409558 STHQ8IWL8 128 aa9.83□□□□□ -0.84
VPS54-203ENST00000409558 TEP1Q99973 2627 aaKnown RBP9.83□□□□□ -0.84
VPS54-203ENST00000409558 IGLV4-69A0A075B6H9 119 aa9.82□□□□□ -0.84
VPS54-203ENST00000409558 MAP6D1Q9H9H5 199 aa9.82□□□□□ -0.84
VPS54-203ENST00000409558 PPP1R17O96001 155 aa9.81□□□□□ -0.84
VPS54-203ENST00000409558 PTH2Q96A98 100 aa9.81□□□□□ -0.84
VPS54-203ENST00000409558 DNAJC9-AS1A6NH13 148 aa9.81□□□□□ -0.84
VPS54-203ENST00000409558 IGIPA6NJ69 53 aa9.81□□□□□ -0.84
VPS54-203ENST00000409558 J3QLI3 93 aa9.81□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 49.5 ms