RNA–Protein interactions for RNA: ENST00000334654.4

CHGA-202, Transcript of chromogranin A, humanhuman

TSL 1 (best) BASIC

Gene CHGA, Length 1,474 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHGA-202ENST00000334654 RHOHQ15669 191 aa12.17□□□□□ -0.46
CHGA-202ENST00000334654 TMEM136Q6ZRR5 245 aa12.17□□□□□ -0.46
CHGA-202ENST00000334654 KLK5Q9Y337 293 aaPredicted RBP12.17□□□□□ -0.46
CHGA-202ENST00000334654 PLECQ15149 4684 aaKnown RBP12.17□□□□□ -0.46
CHGA-202ENST00000334654 A0A096LPF7 62 aa12.16□□□□□ -0.46
CHGA-202ENST00000334654 GYPEP15421 78 aa12.16□□□□□ -0.46
CHGA-202ENST00000334654 MRPL51Q4U2R6 128 aaKnown RBP12.16□□□□□ -0.46
CHGA-202ENST00000334654 LINC00694P0DN24 101 aa12.15□□□□□ -0.46
CHGA-202ENST00000334654 NEXN-AS1Q8NBZ9 246 aa12.15□□□□□ -0.46
CHGA-202ENST00000334654 PRADC1Q9BSG0 188 aa12.15□□□□□ -0.46
CHGA-202ENST00000334654 TRBV10-1A0A0K0K1A3 114 aa12.14□□□□□ -0.47
CHGA-202ENST00000334654 S100A6P06703 90 aa12.14□□□□□ -0.47
CHGA-202ENST00000334654 FABP9Q0Z7S8 132 aa12.14□□□□□ -0.47
CHGA-202ENST00000334654 C15orf53Q8NAA6 179 aa12.14□□□□□ -0.47
CHGA-202ENST00000334654 FRZBQ92765 325 aa12.14□□□□□ -0.47
CHGA-202ENST00000334654 HIST1H2BKO60814 126 aa12.14□□□□□ -0.47
CHGA-202ENST00000334654 NUDT3O95989 172 aa12.14□□□□□ -0.47
CHGA-202ENST00000334654 HIST1H2BJP06899 126 aa12.14□□□□□ -0.47
CHGA-202ENST00000334654 HIST1H2BOP23527 126 aa12.14□□□□□ -0.47
CHGA-202ENST00000334654 HIST1H2BBP33778 126 aa12.14□□□□□ -0.47
CHGA-202ENST00000334654 HIST1H2BDP58876 126 aa12.14□□□□□ -0.47
CHGA-202ENST00000334654 HIST1H2BCP62807 126 aa12.14□□□□□ -0.47
CHGA-202ENST00000334654 HIST2H2BEQ16778 126 aa12.14□□□□□ -0.47
CHGA-202ENST00000334654 HIST2H2BFQ5QNW6 126 aaPredicted RBP12.14□□□□□ -0.47
CHGA-202ENST00000334654 HIST1H2BHQ93079 126 aa12.14□□□□□ -0.47
CHGA-202ENST00000334654 HIST1H2BNQ99877 126 aa12.14□□□□□ -0.47
CHGA-202ENST00000334654 HIST1H2BMQ99879 126 aa12.14□□□□□ -0.47
CHGA-202ENST00000334654 MRPL18Q9H0U6 180 aaKnown RBP12.14□□□□□ -0.47
CHGA-202ENST00000334654 SMKR1H3BMG3 65 aa12.13□□□□□ -0.47
CHGA-202ENST00000334654 MRPL23Q16540 153 aaKnown RBP12.13□□□□□ -0.47
CHGA-202ENST00000334654 ICOSQ9Y6W8 199 aa12.13□□□□□ -0.47
CHGA-202ENST00000334654 GAGE12JA6NER3 117 aa12.12□□□□□ -0.47
CHGA-202ENST00000334654 APCSP02743 223 aa12.12□□□□□ -0.47
CHGA-202ENST00000334654 TCTAP57738 103 aa12.12□□□□□ -0.47
CHGA-202ENST00000334654 GAGE1Q13065 139 aa12.12□□□□□ -0.47
CHGA-202ENST00000334654 GAGE4Q13068 117 aa12.12□□□□□ -0.47
CHGA-202ENST00000334654 GAGE5Q13069 117 aa12.12□□□□□ -0.47
CHGA-202ENST00000334654 GAGE13Q4V321 117 aa12.12□□□□□ -0.47
CHGA-202ENST00000334654 ZNRF2Q8NHG8 242 aa12.12□□□□□ -0.47
CHGA-202ENST00000334654 RPL39LQ96EH5 51 aaKnown RBP12.12□□□□□ -0.47
CHGA-202ENST00000334654 MRAP2Q96G30 205 aa12.12□□□□□ -0.47
CHGA-202ENST00000334654 NIT2Q9NQR4 276 aa12.12□□□□□ -0.47
CHGA-202ENST00000334654 TRBV7-3A0A075B6L6 115 aa12.11□□□□□ -0.47
CHGA-202ENST00000334654 H7C1H1 209 aa12.11□□□□□ -0.47
CHGA-202ENST00000334654 NCR2O95944 276 aa12.11□□□□□ -0.47
CHGA-202ENST00000334654 COA6Q5JTJ3 125 aaKnown RBP12.11□□□□□ -0.47
CHGA-202ENST00000334654 UBE2D3P61077 147 aa12.1□□□□□ -0.47
CHGA-202ENST00000334654 UBE2D2P62837 147 aa12.1□□□□□ -0.47
CHGA-202ENST00000334654 NRACQ8N912 160 aa12.1□□□□□ -0.47
CHGA-202ENST00000334654 C5orf52A6NGY3 159 aa12.09□□□□□ -0.47
CHGA-202ENST00000334654 SRIP30626 198 aa12.09□□□□□ -0.47
CHGA-202ENST00000334654 RPL36AP83881 106 aaKnown RBP12.09□□□□□ -0.47
CHGA-202ENST00000334654 RPL36ALQ969Q0 106 aaKnown RBP12.09□□□□□ -0.47
CHGA-202ENST00000334654 DNAJC30Q96LL9 226 aa12.09□□□□□ -0.47
CHGA-202ENST00000334654 TRBV6-5A0A0K0K1A5 114 aa12.08□□□□□ -0.47
CHGA-202ENST00000334654 D6R8Y8 96 aa12.08□□□□□ -0.47
CHGA-202ENST00000334654 Q0VG73 95 aa12.08□□□□□ -0.47
CHGA-202ENST00000334654 NEGR1Q7Z3B1 354 aa12.08□□□□□ -0.47
CHGA-202ENST00000334654 CKS2P33552 79 aa12.08□□□□□ -0.48
CHGA-202ENST00000334654 ESRGQ1W209 222 aa12.08□□□□□ -0.48
CHGA-202ENST00000334654 OR10J3Q5JRS4 329 aa12.08□□□□□ -0.48
CHGA-202ENST00000334654 ATP6V0E2Q8NHE4 81 aa12.08□□□□□ -0.48
CHGA-202ENST00000334654 LYSTQ99698 3801 aa12.07□□□□□ -0.48
CHGA-202ENST00000334654 PPBPP02775 128 aa12.07□□□□□ -0.48
CHGA-202ENST00000334654 KIAA1644Q3SXP7 199 aa12.07□□□□□ -0.48
CHGA-202ENST00000334654 LYPD5Q6UWN5 251 aa12.07□□□□□ -0.48
CHGA-202ENST00000334654 TNFRSF18Q9Y5U5 241 aa12.07□□□□□ -0.48
CHGA-202ENST00000334654 NPYP01303 97 aa12.06□□□□□ -0.48
CHGA-202ENST00000334654 SH2D6Q7Z4S9 175 aa12.06□□□□□ -0.48
CHGA-202ENST00000334654 TNFRSF6BO95407 300 aa12.05□□□□□ -0.48
CHGA-202ENST00000334654 POLR2KP53803 58 aaKnown RBP12.05□□□□□ -0.48
CHGA-202ENST00000334654 ORMDL3Q8N138 153 aa12.05□□□□□ -0.48
CHGA-202ENST00000334654 PRELID3AQ96N28 172 aa12.05□□□□□ -0.48
CHGA-202ENST00000334654 IGHV3-38A0A0C4DH36 116 aa12.04□□□□□ -0.48
CHGA-202ENST00000334654 SDHAF1A6NFY7 115 aa12.04□□□□□ -0.48
CHGA-202ENST00000334654 NDUFA6P56556 154 aa12.04□□□□□ -0.48
CHGA-202ENST00000334654 GTSF1LQ9H1H1 148 aa12.04□□□□□ -0.48
CHGA-202ENST00000334654 LINC00588Q9Y4M8 146 aa12.04□□□□□ -0.48
CHGA-202ENST00000334654 PPP1R17O96001 155 aa12.03□□□□□ -0.48
CHGA-202ENST00000334654 TIRAPP58753 221 aa12.03□□□□□ -0.48
CHGA-202ENST00000334654 SNRPEP62304 92 aaKnown RBP12.03□□□□□ -0.48
CHGA-202ENST00000334654 ALKBH7Q9BT30 221 aaPredicted RBP12.03□□□□□ -0.48
CHGA-202ENST00000334654 TMEM70Q9BUB7 260 aa12.03□□□□□ -0.48
CHGA-202ENST00000334654 ST20Q9HBF5 79 aa12.03□□□□□ -0.48
CHGA-202ENST00000334654 LOC105371267A0A1B0GV96 52 aa12.02□□□□□ -0.48
CHGA-202ENST00000334654 NTM-AS1Q6ZSK4 140 aa12.02□□□□□ -0.48
CHGA-202ENST00000334654 DAZ4Q86SG3 579 aaKnown RBP12.02□□□□□ -0.48
CHGA-202ENST00000334654 DAZ3Q9NR90 486 aaKnown RBP12.02□□□□□ -0.48
CHGA-202ENST00000334654 LAMTOR2Q9Y2Q5 125 aa12.02□□□□□ -0.48
CHGA-202ENST00000334654 PRSS47A8MTI9 375 aa12.02□□□□□ -0.49
CHGA-202ENST00000334654 SUMO2P61956 95 aaKnown RBP12.02□□□□□ -0.49
CHGA-202ENST00000334654 C20orf78Q9BR46 151 aa12.02□□□□□ -0.49
CHGA-202ENST00000334654 VPS13DQ5THJ4 4388 aa12.01□□□□□ -0.49
CHGA-202ENST00000334654 TRBV27A0A0K0K1C4 114 aa12.01□□□□□ -0.49
CHGA-202ENST00000334654 ESDP10768 282 aa12.01□□□□□ -0.49
CHGA-202ENST00000334654 RPL32P62910 135 aaKnown RBP12.01□□□□□ -0.49
CHGA-202ENST00000334654 DEFB104AQ8WTQ1 72 aa12.01□□□□□ -0.49
CHGA-202ENST00000334654 CCL18P55774 89 aa12□□□□□ -0.49
CHGA-202ENST00000334654 LGALS9CQ6DKI2 356 aa12□□□□□ -0.49
CHGA-202ENST00000334654 PACRGQ96M98 296 aaPredicted RBP12□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 54.2 ms