RNA–Protein interactions for RNA: ENST00000636355.1

CLN3-248, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 975 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-248ENST00000636355 RCHY1Q96PM5 261 aa7.69□□□□□ -1.18
CLN3-248ENST00000636355 C20orf78Q9BR46 151 aa7.69□□□□□ -1.18
CLN3-248ENST00000636355 SAMD10Q9BYL1 202 aa7.69□□□□□ -1.18
CLN3-248ENST00000636355 CSTL1Q9H114 145 aa7.69□□□□□ -1.18
CLN3-248ENST00000636355 WFDC10AQ9H1F0 79 aa7.69□□□□□ -1.18
CLN3-248ENST00000636355 AP5S1Q9NUS5 200 aa7.69□□□□□ -1.18
CLN3-248ENST00000636355 TIMM8BQ9Y5J9 83 aaPredicted RBP7.69□□□□□ -1.18
CLN3-248ENST00000636355 KIF25-AS1Q9Y6Z4 181 aa7.69□□□□□ -1.18
CLN3-248ENST00000636355 SMIM9A6NGZ8 99 aa7.68□□□□□ -1.18
CLN3-248ENST00000636355 AKR1D1P51857 326 aa7.68□□□□□ -1.18
CLN3-248ENST00000636355 DAZ2Q13117 558 aaKnown RBP7.68□□□□□ -1.18
CLN3-248ENST00000636355 ZNF876PQ49A33 203 aa7.68□□□□□ -1.18
CLN3-248ENST00000636355 A8MZ25 164 aa7.67□□□□□ -1.18
CLN3-248ENST00000636355 H7C1H1 209 aa7.67□□□□□ -1.18
CLN3-248ENST00000636355 CIDEAO60543 219 aa7.67□□□□□ -1.18
CLN3-248ENST00000636355 TNFRSF6BO95407 300 aa7.67□□□□□ -1.18
CLN3-248ENST00000636355 NPYP01303 97 aa7.67□□□□□ -1.18
CLN3-248ENST00000636355 LINC00614P0C842 121 aa7.67□□□□□ -1.18
CLN3-248ENST00000636355 AMTP48728 403 aa7.67□□□□□ -1.18
CLN3-248ENST00000636355 LINC00315P59091 139 aa7.67□□□□□ -1.18
CLN3-248ENST00000636355 IQCJQ1A5X6 159 aa7.67□□□□□ -1.18
CLN3-248ENST00000636355 PDZD11Q5EBL8 140 aa7.67□□□□□ -1.18
CLN3-248ENST00000636355 RNASEKQ6P5S7 137 aaKnown RBP7.67□□□□□ -1.18
CLN3-248ENST00000636355 FA2HQ7L5A8 372 aa7.67□□□□□ -1.18
CLN3-248ENST00000636355 C14orf178Q8N769 122 aaPredicted RBP7.67□□□□□ -1.18
CLN3-248ENST00000636355 NRACQ8N912 160 aa7.67□□□□□ -1.18
CLN3-248ENST00000636355 RASL10AQ92737 203 aa7.67□□□□□ -1.18
CLN3-248ENST00000636355 NACAE9PAV3 2078 aa7.67□□□□□ -1.18
CLN3-248ENST00000636355 FBN1P35555 2871 aaKnown RBP7.67□□□□□ -1.18
CLN3-248ENST00000636355 TRBV6-5A0A0K0K1A5 114 aa7.66□□□□□ -1.18
CLN3-248ENST00000636355 LINC01549A6NIU2 74 aa7.66□□□□□ -1.18
CLN3-248ENST00000636355 RPL35AP18077 110 aaKnown RBP7.66□□□□□ -1.18
CLN3-248ENST00000636355 RRN3P1Q2M238 152 aa7.66□□□□□ -1.18
CLN3-248ENST00000636355 ZFP2Q6ZN57 461 aa7.66□□□□□ -1.18
CLN3-248ENST00000636355 NIT1Q86X76 327 aa7.66□□□□□ -1.18
CLN3-248ENST00000636355 PRSS3P2Q8NHM4 247 aa7.66□□□□□ -1.18
CLN3-248ENST00000636355 TCAPO15273 167 aa7.65□□□□□ -1.18
CLN3-248ENST00000636355 NCR2O95944 276 aa7.65□□□□□ -1.18
CLN3-248ENST00000636355 CRYGDP07320 174 aa7.65□□□□□ -1.18
CLN3-248ENST00000636355 MGPP08493 103 aa7.65□□□□□ -1.18
CLN3-248ENST00000636355 SSTP61278 116 aa7.65□□□□□ -1.18
CLN3-248ENST00000636355 SUMO2P61956 95 aaKnown RBP7.65□□□□□ -1.18
CLN3-248ENST00000636355 OR10D4PQ8NGN7 298 aa7.65□□□□□ -1.18
CLN3-248ENST00000636355 URB1-AS1Q96HZ7 61 aa7.65□□□□□ -1.18
CLN3-248ENST00000636355 SMIM2Q9BVW6 85 aa7.65□□□□□ -1.18
CLN3-248ENST00000636355 IGHV1-24A0A0C4DH33 117 aa7.64□□□□□ -1.19
CLN3-248ENST00000636355 SPRY2O43597 315 aa7.64□□□□□ -1.19
CLN3-248ENST00000636355 NUPR1O60356 82 aa7.64□□□□□ -1.19
CLN3-248ENST00000636355 HTN1P15515 57 aa7.64□□□□□ -1.19
CLN3-248ENST00000636355 UFSP1Q6NVU6 142 aa7.64□□□□□ -1.19
CLN3-248ENST00000636355 Q8N8P6 123 aa7.64□□□□□ -1.19
CLN3-248ENST00000636355 OVOL2Q9BRP0 275 aa7.64□□□□□ -1.19
CLN3-248ENST00000636355 IGHV3OR16-12A0A075B7B8 117 aa7.63□□□□□ -1.19
CLN3-248ENST00000636355 SMKR1H3BMG3 65 aa7.63□□□□□ -1.19
CLN3-248ENST00000636355 RS1O15537 224 aa7.63□□□□□ -1.19
CLN3-248ENST00000636355 G0S2P27469 103 aa7.63□□□□□ -1.19
CLN3-248ENST00000636355 JOSD1Q15040 202 aaPredicted RBP7.63□□□□□ -1.19
CLN3-248ENST00000636355 ZNF56Q15929 161 aa7.63□□□□□ -1.19
CLN3-248ENST00000636355 SUMO4Q6EEV6 95 aa7.63□□□□□ -1.19
CLN3-248ENST00000636355 Q6ZWC4 215 aa7.63□□□□□ -1.19
CLN3-248ENST00000636355 C18orf15Q96N68 181 aa7.63□□□□□ -1.19
CLN3-248ENST00000636355 HSPB8Q9UJY1 196 aa7.63□□□□□ -1.19
CLN3-248ENST00000636355 IGLV2-18A0A075B6J9 118 aa7.62□□□□□ -1.19
CLN3-248ENST00000636355 A0A087WWL8 130 aa7.62□□□□□ -1.19
CLN3-248ENST00000636355 TRAV26-2A0A0B4J265 109 aa7.62□□□□□ -1.19
CLN3-248ENST00000636355 TRAV4A0A0B4J268 109 aa7.62□□□□□ -1.19
CLN3-248ENST00000636355 PLAC8L1A1L4L8 177 aa7.62□□□□□ -1.19
CLN3-248ENST00000636355 M0QY20 66 aa7.62□□□□□ -1.19
CLN3-248ENST00000636355 HBDP02042 147 aa7.62□□□□□ -1.19
CLN3-248ENST00000636355 IGHV4-30-4P0DP06 118 aa7.62□□□□□ -1.19
CLN3-248ENST00000636355 IFI27P40305 119 aaPredicted RBP7.62□□□□□ -1.19
CLN3-248ENST00000636355 SAMD5Q5TGI4 173 aa7.62□□□□□ -1.19
CLN3-248ENST00000636355 FAM74A4Q5TZK3 123 aa7.62□□□□□ -1.19
CLN3-248ENST00000636355 CFAP126Q5VTH2 177 aa7.62□□□□□ -1.19
CLN3-248ENST00000636355 LINC00518Q8N0U6 118 aa7.62□□□□□ -1.19
CLN3-248ENST00000636355 ST20Q9HBF5 79 aa7.62□□□□□ -1.19
CLN3-248ENST00000636355 TP53TG1Q9Y2A0 90 aa7.62□□□□□ -1.19
CLN3-248ENST00000636355 TRBV27A0A0K0K1C4 114 aa7.61□□□□□ -1.19
CLN3-248ENST00000636355 TEX48A0A1B0GUV7 120 aa7.61□□□□□ -1.19
CLN3-248ENST00000636355 F5H697 171 aa7.61□□□□□ -1.19
CLN3-248ENST00000636355 IGHV3-53P01767 116 aa7.61□□□□□ -1.19
CLN3-248ENST00000636355 AZU1P20160 251 aa7.61□□□□□ -1.19
CLN3-248ENST00000636355 ORMDL2Q53FV1 153 aa7.61□□□□□ -1.19
CLN3-248ENST00000636355 LINC00612Q8N6U2 182 aa7.61□□□□□ -1.19
CLN3-248ENST00000636355 NIT2Q9NQR4 276 aa7.61□□□□□ -1.19
CLN3-248ENST00000636355 TRGV1A0A0A0MS02 117 aa7.6□□□□□ -1.19
CLN3-248ENST00000636355 TRBV10-1A0A0K0K1A3 114 aa7.6□□□□□ -1.19
CLN3-248ENST00000636355 LYRM9A8MSI8 78 aa7.6□□□□□ -1.19
CLN3-248ENST00000636355 LEPROTL1O95214 131 aa7.6□□□□□ -1.19
CLN3-248ENST00000636355 MIFP14174 115 aa7.6□□□□□ -1.19
CLN3-248ENST00000636355 OXLD1Q5BKU9 147 aa7.6□□□□□ -1.19
CLN3-248ENST00000636355 PYY3Q5JQD4 70 aa7.6□□□□□ -1.19
CLN3-248ENST00000636355 DNAJC30Q96LL9 226 aa7.6□□□□□ -1.19
CLN3-248ENST00000636355 C12orf57Q99622 126 aa7.6□□□□□ -1.19
CLN3-248ENST00000636355 KIR2DL4Q99706 377 aa7.6□□□□□ -1.19
CLN3-248ENST00000636355 TMEM70Q9BUB7 260 aa7.6□□□□□ -1.19
CLN3-248ENST00000636355 JPT2Q9H910 190 aa7.6□□□□□ -1.19
CLN3-248ENST00000636355 MRPL16Q9NX20 251 aaKnown RBP7.6□□□□□ -1.19
CLN3-248ENST00000636355 X6R8D5 127 aa7.6□□□□□ -1.19
CLN3-248ENST00000636355 ANK2Q01484 3957 aa7.6□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms