RNA–Protein interactions for RNA: ENST00000566354.1

VPS4A-204, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 1 (best)

Gene VPS4A, Length 2,329 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-204ENST00000566354 G3V318 75 aa10.07□□□□□ -0.8
VPS4A-204ENST00000566354 PHLDA1Q8WV24 401 aaPredicted RBP10.07□□□□□ -0.8
VPS4A-204ENST00000566354 SPANXB1Q9NS25 103 aaPredicted RBP10.07□□□□□ -0.8
VPS4A-204ENST00000566354 SPANXCQ9NY87 97 aa10.07□□□□□ -0.8
VPS4A-204ENST00000566354 TRAV26-2A0A0B4J265 109 aa10.06□□□□□ -0.8
VPS4A-204ENST00000566354 PLNP26678 52 aa10.06□□□□□ -0.8
VPS4A-204ENST00000566354 TAL2Q16559 108 aa10.06□□□□□ -0.8
VPS4A-204ENST00000566354 LENEPQ9Y5L5 61 aa10.06□□□□□ -0.8
VPS4A-204ENST00000566354 OTOGQ6ZRI0 2925 aa10.06□□□□□ -0.8
VPS4A-204ENST00000566354 GAGE12JA6NER3 117 aa10.06□□□□□ -0.8
VPS4A-204ENST00000566354 B5MCH6 92 aa10.06□□□□□ -0.8
VPS4A-204ENST00000566354 M0QXV9 152 aa10.06□□□□□ -0.8
VPS4A-204ENST00000566354 GAGE7O76087 117 aa10.06□□□□□ -0.8
VPS4A-204ENST00000566354 GAGE12FP0CL80 117 aa10.06□□□□□ -0.8
VPS4A-204ENST00000566354 GAGE12GP0CL81 117 aa10.06□□□□□ -0.8
VPS4A-204ENST00000566354 GAGE12IP0CL82 117 aa10.06□□□□□ -0.8
VPS4A-204ENST00000566354 GAGE4Q13068 117 aa10.06□□□□□ -0.8
VPS4A-204ENST00000566354 IGHV3-49A0A0A0MS15 119 aa10.05□□□□□ -0.8
VPS4A-204ENST00000566354 ATP6V0E2Q8NHE4 81 aa10.05□□□□□ -0.8
VPS4A-204ENST00000566354 CSDC2Q9Y534 153 aaKnown RBP10.05□□□□□ -0.8
VPS4A-204ENST00000566354 LINC01548A6NM66 108 aa10.05□□□□□ -0.8
VPS4A-204ENST00000566354 ATP5G2Q06055 141 aa10.05□□□□□ -0.8
VPS4A-204ENST00000566354 C16orf92Q96LL3 132 aa10.05□□□□□ -0.8
VPS4A-204ENST00000566354 NHP2Q9NX24 153 aaKnown RBP10.05□□□□□ -0.8
VPS4A-204ENST00000566354 TRAV12-1A0A0B4J245 112 aa10.04□□□□□ -0.8
VPS4A-204ENST00000566354 J3QLI3 93 aa10.04□□□□□ -0.8
VPS4A-204ENST00000566354 SPINK8P0C7L1 97 aa10.04□□□□□ -0.8
VPS4A-204ENST00000566354 H3BVH4 76 aa10.04□□□□□ -0.8
VPS4A-204ENST00000566354 K7ERJ3 54 aa10.04□□□□□ -0.8
VPS4A-204ENST00000566354 MAPKAPK5-AS1Q8N8E1 139 aa10.04□□□□□ -0.8
VPS4A-204ENST00000566354 SMIM2Q9BVW6 85 aa10.04□□□□□ -0.8
VPS4A-204ENST00000566354 H7C1H1 209 aa10.03□□□□□ -0.8
VPS4A-204ENST00000566354 ORMDL2Q53FV1 153 aa10.03□□□□□ -0.8
VPS4A-204ENST00000566354 Q6ZQT7 251 aa10.03□□□□□ -0.8
VPS4A-204ENST00000566354 C9orf139Q6ZV77 190 aa10.03□□□□□ -0.8
VPS4A-204ENST00000566354 E9PLD3 99 aa10.02□□□□□ -0.8
VPS4A-204ENST00000566354 F8VRH5 84 aa10.02□□□□□ -0.8
VPS4A-204ENST00000566354 K7EMI3 77 aa10.02□□□□□ -0.8
VPS4A-204ENST00000566354 C5orf56Q8N8D9 126 aa10.02□□□□□ -0.8
VPS4A-204ENST00000566354 LINC00477Q96M19 166 aa10.02□□□□□ -0.8
VPS4A-204ENST00000566354 BAHCC1Q9P281 2608 aa10.02□□□□□ -0.8
VPS4A-204ENST00000566354 C20orf78Q9BR46 151 aa10.02□□□□□ -0.81
VPS4A-204ENST00000566354 PRR9Q5T870 116 aa10.01□□□□□ -0.81
VPS4A-204ENST00000566354 FAM223BA6NKX1 122 aa10.01□□□□□ -0.81
VPS4A-204ENST00000566354 IGLL5B9A064 214 aa10.01□□□□□ -0.81
VPS4A-204ENST00000566354 SUMO2P61956 95 aaKnown RBP10.01□□□□□ -0.81
VPS4A-204ENST00000566354 FAM223AQ8IWN6 122 aa10.01□□□□□ -0.81
VPS4A-204ENST00000566354 SCGB3A1Q96QR1 104 aa10.01□□□□□ -0.81
VPS4A-204ENST00000566354 SPAG8Q99932 426 aaPredicted RBP10.01□□□□□ -0.81
VPS4A-204ENST00000566354 TRAV21A0A0B4J279 112 aa10□□□□□ -0.81
VPS4A-204ENST00000566354 LINC01619G3V211 115 aa10□□□□□ -0.81
VPS4A-204ENST00000566354 C12orf74Q32Q52 190 aa10□□□□□ -0.81
VPS4A-204ENST00000566354 TMEM219Q86XT9 240 aa10□□□□□ -0.81
VPS4A-204ENST00000566354 TOMM6Q96B49 74 aa10□□□□□ -0.81
VPS4A-204ENST00000566354 DNAJC30Q96LL9 226 aa10□□□□□ -0.81
VPS4A-204ENST00000566354 HIST1H4GQ99525 98 aa10□□□□□ -0.81
VPS4A-204ENST00000566354 MTORP42345 2549 aa10□□□□□ -0.81
VPS4A-204ENST00000566354 TRAV41A0A0B4J266 112 aa10□□□□□ -0.81
VPS4A-204ENST00000566354 OVOL1O14753 267 aa10□□□□□ -0.81
VPS4A-204ENST00000566354 FSHBP01225 129 aa10□□□□□ -0.81
VPS4A-204ENST00000566354 KRTAP1-1Q07627 177 aa10□□□□□ -0.81
VPS4A-204ENST00000566354 ZFAND6Q6FIF0 208 aa10□□□□□ -0.81
VPS4A-204ENST00000566354 ZFAND2AQ8N6M9 145 aa10□□□□□ -0.81
VPS4A-204ENST00000566354 OR10J6PQ8NGY7 276 aa10□□□□□ -0.81
VPS4A-204ENST00000566354 MRAPQ8TCY5 172 aa10□□□□□ -0.81
VPS4A-204ENST00000566354 C20orf173Q96LM9 149 aa10□□□□□ -0.81
VPS4A-204ENST00000566354 DPH3P1Q9H4G8 78 aa10□□□□□ -0.81
VPS4A-204ENST00000566354 SMIM9A6NGZ8 99 aa9.99□□□□□ -0.81
VPS4A-204ENST00000566354 NEXN-AS1Q8NBZ9 246 aa9.99□□□□□ -0.81
VPS4A-204ENST00000566354 RASL10AQ92737 203 aa9.99□□□□□ -0.81
VPS4A-204ENST00000566354 SETXQ7Z333 2677 aaKnown RBP9.99□□□□□ -0.81
VPS4A-204ENST00000566354 H3BUX3 64 aa9.99□□□□□ -0.81
VPS4A-204ENST00000566354 M0R381 172 aa9.99□□□□□ -0.81
VPS4A-204ENST00000566354 IGF1P05019 195 aa9.99□□□□□ -0.81
VPS4A-204ENST00000566354 S100A4P26447 101 aaKnown RBP9.99□□□□□ -0.81
VPS4A-204ENST00000566354 ASIPP42127 132 aa9.99□□□□□ -0.81
VPS4A-204ENST00000566354 DEFB112Q30KQ8 113 aa9.99□□□□□ -0.81
VPS4A-204ENST00000566354 C19orf54Q5BKX5 351 aa9.99□□□□□ -0.81
VPS4A-204ENST00000566354 MOB4Q9Y3A3 225 aa9.99□□□□□ -0.81
VPS4A-204ENST00000566354 MYMXA0A1B0GTQ4 84 aa9.98□□□□□ -0.81
VPS4A-204ENST00000566354 MED14OSP0DP75 135 aa9.98□□□□□ -0.81
VPS4A-204ENST00000566354 CRIP2P52943 208 aaPredicted RBP9.98□□□□□ -0.81
VPS4A-204ENST00000566354 LY6EQ16553 131 aa9.98□□□□□ -0.81
VPS4A-204ENST00000566354 PHLDA3Q9Y5J5 127 aa9.98□□□□□ -0.81
VPS4A-204ENST00000566354 TRBV7-3A0A075B6L6 115 aa9.98□□□□□ -0.81
VPS4A-204ENST00000566354 Q6Q795 121 aa9.98□□□□□ -0.81
VPS4A-204ENST00000566354 A0A1B0GWB2 263 aa9.97□□□□□ -0.81
VPS4A-204ENST00000566354 NDUFA4O00483 81 aa9.97□□□□□ -0.81
VPS4A-204ENST00000566354 PPP1R17O96001 155 aa9.97□□□□□ -0.81
VPS4A-204ENST00000566354 Q6ZUT4 128 aa9.97□□□□□ -0.81
VPS4A-204ENST00000566354 GPHB5Q86YW7 130 aa9.97□□□□□ -0.81
VPS4A-204ENST00000566354 C14orf178Q8N769 122 aaPredicted RBP9.97□□□□□ -0.81
VPS4A-204ENST00000566354 KLK15Q9H2R5 256 aa9.97□□□□□ -0.81
VPS4A-204ENST00000566354 SOCS3O14543 225 aa9.96□□□□□ -0.81
VPS4A-204ENST00000566354 SRD5A1P18405 259 aa9.96□□□□□ -0.81
VPS4A-204ENST00000566354 DUX5Q96PT3 197 aa9.96□□□□□ -0.81
VPS4A-204ENST00000566354 RRN3P1Q2M238 152 aa9.96□□□□□ -0.82
VPS4A-204ENST00000566354 C2orf66Q6UXQ4 117 aa9.96□□□□□ -0.82
VPS4A-204ENST00000566354 TEX29Q8N6K0 151 aa9.96□□□□□ -0.82
VPS4A-204ENST00000566354 RPL39LQ96EH5 51 aaKnown RBP9.96□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms