RNA–Protein interactions for RNA: ENST00000564353.5

CLK3-215, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,847 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-215ENST00000564353 YAE1D1Q9NRH1 226 aa10.13□□□□□ -0.79
CLK3-215ENST00000564353 MYO9AB2RTY4 2548 aa10.13□□□□□ -0.79
CLK3-215ENST00000564353 KLK9Q2XQG4 91 aa10.12□□□□□ -0.79
CLK3-215ENST00000564353 DEFB112Q30KQ8 113 aa10.12□□□□□ -0.79
CLK3-215ENST00000564353 TEX15Q9BXT5 2789 aa10.12□□□□□ -0.79
CLK3-215ENST00000564353 OVOL1O14753 267 aa10.12□□□□□ -0.79
CLK3-215ENST00000564353 RPL39P62891 51 aaKnown RBP10.12□□□□□ -0.79
CLK3-215ENST00000564353 C2orf66Q6UXQ4 117 aa10.12□□□□□ -0.79
CLK3-215ENST00000564353 DPH3P1Q9H4G8 78 aa10.12□□□□□ -0.79
CLK3-215ENST00000564353 SONP18583 2426 aaKnown RBP10.12□□□□□ -0.79
CLK3-215ENST00000564353 A0A087WX48 190 aa10.11□□□□□ -0.79
CLK3-215ENST00000564353 LINC01546A6NGU7 62 aa10.11□□□□□ -0.79
CLK3-215ENST00000564353 DUSP14O95147 198 aaKnown RBP10.11□□□□□ -0.79
CLK3-215ENST00000564353 SMIM13P0DJ93 91 aa10.11□□□□□ -0.79
CLK3-215ENST00000564353 SAMD5Q5TGI4 173 aa10.11□□□□□ -0.79
CLK3-215ENST00000564353 A0A1W2PPM0 123 aa10.11□□□□□ -0.79
CLK3-215ENST00000564353 SYNJ2BPP57105 145 aa10.11□□□□□ -0.79
CLK3-215ENST00000564353 FAM159AQ6UWV7 190 aa10.11□□□□□ -0.79
CLK3-215ENST00000564353 HIST1H4GQ99525 98 aa10.11□□□□□ -0.79
CLK3-215ENST00000564353 SPATA25Q9BR10 227 aa10.11□□□□□ -0.79
CLK3-215ENST00000564353 MDFICQ9P1T7 246 aa10.11□□□□□ -0.79
CLK3-215ENST00000564353 CYSLTR1Q9Y271 337 aa10.11□□□□□ -0.79
CLK3-215ENST00000564353 RNF223E7ERA6 249 aa10.1□□□□□ -0.79
CLK3-215ENST00000564353 SPINK13Q1W4C9 94 aa10.1□□□□□ -0.79
CLK3-215ENST00000564353 AMTNQ6UX39 209 aa10.1□□□□□ -0.79
CLK3-215ENST00000564353 KLHL30-AS1Q8NEE0 82 aa10.1□□□□□ -0.79
CLK3-215ENST00000564353 USMG5Q96IX5 58 aa10.1□□□□□ -0.79
CLK3-215ENST00000564353 ZNF256Q9Y2P7 627 aaPredicted RBP10.1□□□□□ -0.79
CLK3-215ENST00000564353 DEFB136Q30KP8 78 aa10.1□□□□□ -0.79
CLK3-215ENST00000564353 NOTCH3Q9UM47 2321 aa10.09□□□□□ -0.79
CLK3-215ENST00000564353 IGHV4-4A0A075B6R2 117 aa10.09□□□□□ -0.79
CLK3-215ENST00000564353 TGFAP01135 160 aa10.09□□□□□ -0.79
CLK3-215ENST00000564353 GAGE5Q13069 117 aa10.09□□□□□ -0.79
CLK3-215ENST00000564353 GAGE6Q13070 117 aa10.09□□□□□ -0.79
CLK3-215ENST00000564353 SH2D6Q7Z4S9 175 aa10.09□□□□□ -0.79
CLK3-215ENST00000564353 OR5A1Q8NGJ0 315 aa10.09□□□□□ -0.79
CLK3-215ENST00000564353 DUX3Q96PT4 197 aa10.09□□□□□ -0.79
CLK3-215ENST00000564353 NAV2Q8IVL1 2488 aa10.09□□□□□ -0.79
CLK3-215ENST00000564353 NIPBLQ6KC79 2804 aaeCLIP10.09□□□□□ -0.79
CLK3-215ENST00000564353 BAALCQ8WXS3 180 aa10.09□□□□□ -0.79
CLK3-215ENST00000564353 NF1P21359 2839 aa10.08□□□□□ -0.8
CLK3-215ENST00000564353 IGHV3-73A0A0B4J1V6 119 aa10.08□□□□□ -0.8
CLK3-215ENST00000564353 PRSS29PA6NIE9 313 aa10.08□□□□□ -0.8
CLK3-215ENST00000564353 J3QR89 54 aa10.08□□□□□ -0.8
CLK3-215ENST00000564353 SPINK8P0C7L1 97 aa10.08□□□□□ -0.8
CLK3-215ENST00000564353 CEND1Q8N111 149 aa10.08□□□□□ -0.8
CLK3-215ENST00000564353 ZNF418Q8TF45 676 aaPredicted RBP10.08□□□□□ -0.8
CLK3-215ENST00000564353 BBC3Q96PG8 261 aaPredicted RBP10.08□□□□□ -0.8
CLK3-215ENST00000564353 SPAG8Q99932 426 aaPredicted RBP10.08□□□□□ -0.8
CLK3-215ENST00000564353 OPRPNQ99935 248 aaPredicted RBP10.08□□□□□ -0.8
CLK3-215ENST00000564353 AKAP9Q99996 3911 aa10.08□□□□□ -0.8
CLK3-215ENST00000564353 F8VRH5 84 aa10.08□□□□□ -0.8
CLK3-215ENST00000564353 IGLV1-40P01703 118 aa10.08□□□□□ -0.8
CLK3-215ENST00000564353 FABP2P12104 132 aa10.08□□□□□ -0.8
CLK3-215ENST00000564353 DCANP1Q8TF63 244 aa10.08□□□□□ -0.8
CLK3-215ENST00000564353 ANAPC13Q9BS18 74 aa10.08□□□□□ -0.8
CLK3-215ENST00000564353 TP53TG1Q9Y2A0 90 aa10.08□□□□□ -0.8
CLK3-215ENST00000564353 H7C1H1 209 aa10.07□□□□□ -0.8
CLK3-215ENST00000564353 INSL3P51460 131 aa10.07□□□□□ -0.8
CLK3-215ENST00000564353 WFDC2Q14508 124 aa10.07□□□□□ -0.8
CLK3-215ENST00000564353 C18orf65Q6ZTR6 163 aa10.07□□□□□ -0.8
CLK3-215ENST00000564353 ERG28Q9UKR5 140 aa10.07□□□□□ -0.8
CLK3-215ENST00000564353 CRIP2P52943 208 aaPredicted RBP10.07□□□□□ -0.8
CLK3-215ENST00000564353 SUMO4Q6EEV6 95 aa10.07□□□□□ -0.8
CLK3-215ENST00000564353 BEX4Q9NWD9 120 aaPredicted RBP10.07□□□□□ -0.8
CLK3-215ENST00000564353 NBPF19A0A087WUL8 3843 aa10.06□□□□□ -0.8
CLK3-215ENST00000564353 ETDBQ3ZM63 59 aa10.06□□□□□ -0.8
CLK3-215ENST00000564353 ORMDL2Q53FV1 153 aa10.06□□□□□ -0.8
CLK3-215ENST00000564353 TOMM6Q96B49 74 aa10.06□□□□□ -0.8
CLK3-215ENST00000564353 B4DSR2 109 aa10.06□□□□□ -0.8
CLK3-215ENST00000564353 M0QXV9 152 aa10.06□□□□□ -0.8
CLK3-215ENST00000564353 NEXN-AS1Q8NBZ9 246 aa10.06□□□□□ -0.8
CLK3-215ENST00000564353 PLEKHB2Q96CS7 222 aa10.06□□□□□ -0.8
CLK3-215ENST00000564353 PRADC1Q9BSG0 188 aa10.06□□□□□ -0.8
CLK3-215ENST00000564353 LENEPQ9Y5L5 61 aa10.06□□□□□ -0.8
CLK3-215ENST00000564353 WNK1Q9H4A3 2382 aa10.06□□□□□ -0.8
CLK3-215ENST00000564353 IGHV3-64A0A075B6Q5 118 aa10.06□□□□□ -0.8
CLK3-215ENST00000564353 ZNF56Q15929 161 aa10.06□□□□□ -0.8
CLK3-215ENST00000564353 FAM19A4Q96LR4 140 aa10.06□□□□□ -0.8
CLK3-215ENST00000564353 SLC25A16P16260 332 aa10.05□□□□□ -0.8
CLK3-215ENST00000564353 PLNP26678 52 aa10.05□□□□□ -0.8
CLK3-215ENST00000564353 CCDC168Q8NDH2 2452 aa10.05□□□□□ -0.8
CLK3-215ENST00000564353 MT-ATP8P03928 68 aa10.05□□□□□ -0.8
CLK3-215ENST00000564353 HLA-DRB4P13762 266 aa10.05□□□□□ -0.8
CLK3-215ENST00000564353 LINC00315P59091 139 aa10.05□□□□□ -0.8
CLK3-215ENST00000564353 SCGB1D4Q6XE38 83 aa10.05□□□□□ -0.8
CLK3-215ENST00000564353 Q8N1Y9 231 aa10.05□□□□□ -0.8
CLK3-215ENST00000564353 C20orf78Q9BR46 151 aa10.05□□□□□ -0.8
CLK3-215ENST00000564353 SPXQ9BT56 116 aa10.05□□□□□ -0.8
CLK3-215ENST00000564353 HLA-DRB4X5D2U9 266 aa10.05□□□□□ -0.8
CLK3-215ENST00000564353 H3BMG7 143 aa10.04□□□□□ -0.8
CLK3-215ENST00000564353 TSHBP01222 138 aa10.04□□□□□ -0.8
CLK3-215ENST00000564353 SPANXB1Q9NS25 103 aaPredicted RBP10.04□□□□□ -0.8
CLK3-215ENST00000564353 IGHV4OR15-8A0A075B7B6 117 aa10.04□□□□□ -0.8
CLK3-215ENST00000564353 A0A087WW49 117 aa10.04□□□□□ -0.8
CLK3-215ENST00000564353 PSMB8P28062 276 aa10.04□□□□□ -0.8
CLK3-215ENST00000564353 CFHR3Q02985 330 aa10.04□□□□□ -0.8
CLK3-215ENST00000564353 PHLDA1Q8WV24 401 aaPredicted RBP10.04□□□□□ -0.8
CLK3-215ENST00000564353 C1QTNF4Q9BXJ3 329 aa10.04□□□□□ -0.8
CLK3-215ENST00000564353 SDHAF1A6NFY7 115 aa10.03□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 62.5 ms