RNA–Protein interactions for RNA: ENST00000563692.1

VPS39-207, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 4

Gene VPS39, Length 587 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-207ENST00000563692 HTN1P15515 57 aa6.53□□□□□ -1.36
VPS39-207ENST00000563692 LINC00310P59036 64 aa6.53□□□□□ -1.36
VPS39-207ENST00000563692 ZNF415Q09FC8 603 aa6.53□□□□□ -1.36
VPS39-207ENST00000563692 JOSD1Q15040 202 aaPredicted RBP6.53□□□□□ -1.36
VPS39-207ENST00000563692 C14orf178Q8N769 122 aaPredicted RBP6.53□□□□□ -1.36
VPS39-207ENST00000563692 XCL2Q9UBD3 114 aa6.53□□□□□ -1.36
VPS39-207ENST00000563692 GOLT1BQ9Y3E0 138 aa6.53□□□□□ -1.36
VPS39-207ENST00000563692 SORL1Q92673 2214 aa6.53□□□□□ -1.36
VPS39-207ENST00000563692 TNFRSF6BO95407 300 aa6.52□□□□□ -1.37
VPS39-207ENST00000563692 SCGB1D1O95968 90 aa6.52□□□□□ -1.37
VPS39-207ENST00000563692 ZNF876PQ49A33 203 aa6.52□□□□□ -1.37
VPS39-207ENST00000563692 PIK3CD-AS1Q5SR53 167 aa6.52□□□□□ -1.37
VPS39-207ENST00000563692 PTH2Q96A98 100 aa6.52□□□□□ -1.37
VPS39-207ENST00000563692 SPXQ9BT56 116 aa6.52□□□□□ -1.37
VPS39-207ENST00000563692 NXT2Q9NPJ8 142 aaKnown RBP6.52□□□□□ -1.37
VPS39-207ENST00000563692 AP5S1Q9NUS5 200 aa6.52□□□□□ -1.37
VPS39-207ENST00000563692 PRSS47A8MTI9 375 aa6.51□□□□□ -1.37
VPS39-207ENST00000563692 SMKR1H3BMG3 65 aa6.51□□□□□ -1.37
VPS39-207ENST00000563692 NCR2O95944 276 aa6.51□□□□□ -1.37
VPS39-207ENST00000563692 NPYP01303 97 aa6.51□□□□□ -1.37
VPS39-207ENST00000563692 MGPP08493 103 aa6.51□□□□□ -1.37
VPS39-207ENST00000563692 IFI27P40305 119 aaPredicted RBP6.51□□□□□ -1.37
VPS39-207ENST00000563692 S100A12P80511 92 aa6.51□□□□□ -1.37
VPS39-207ENST00000563692 PYY3Q5JQD4 70 aa6.51□□□□□ -1.37
VPS39-207ENST00000563692 FAM19A2Q8N3H0 131 aa6.51□□□□□ -1.37
VPS39-207ENST00000563692 ZMAT4Q9H898 229 aa6.51□□□□□ -1.37
VPS39-207ENST00000563692 NIT2Q9NQR4 276 aa6.51□□□□□ -1.37
VPS39-207ENST00000563692 GSN-AS1Q9NRJ2 163 aa6.51□□□□□ -1.37
VPS39-207ENST00000563692 C19orf73Q9NVV2 129 aa6.51□□□□□ -1.37
VPS39-207ENST00000563692 HSPB8Q9UJY1 196 aa6.51□□□□□ -1.37
VPS39-207ENST00000563692 DNAH3Q8TD57 4116 aa6.5□□□□□ -1.37
VPS39-207ENST00000563692 F5H697 171 aa6.5□□□□□ -1.37
VPS39-207ENST00000563692 M0R2P5 195 aa6.5□□□□□ -1.37
VPS39-207ENST00000563692 SPRY2O43597 315 aa6.5□□□□□ -1.37
VPS39-207ENST00000563692 LEPROTL1O95214 131 aa6.5□□□□□ -1.37
VPS39-207ENST00000563692 RBMY1A1P0DJD3 496 aaKnown RBP6.5□□□□□ -1.37
VPS39-207ENST00000563692 RBMY1CP0DJD4 496 aa6.5□□□□□ -1.37
VPS39-207ENST00000563692 RPL35AP18077 110 aaKnown RBP6.5□□□□□ -1.37
VPS39-207ENST00000563692 KRTDAPP60985 99 aa6.5□□□□□ -1.37
VPS39-207ENST00000563692 RBMY1FQ15415 496 aaKnown RBP6.5□□□□□ -1.37
VPS39-207ENST00000563692 DEFB125Q8N687 156 aa6.5□□□□□ -1.37
VPS39-207ENST00000563692 POM121L12Q8N7R1 296 aa6.5□□□□□ -1.37
VPS39-207ENST00000563692 Q8N8P6 123 aa6.5□□□□□ -1.37
VPS39-207ENST00000563692 URB1-AS1Q96HZ7 61 aa6.5□□□□□ -1.37
VPS39-207ENST00000563692 C20orf78Q9BR46 151 aa6.5□□□□□ -1.37
VPS39-207ENST00000563692 NDUFAF3Q9BU61 184 aa6.5□□□□□ -1.37
VPS39-207ENST00000563692 IGHV3OR16-12A0A075B7B8 117 aa6.49□□□□□ -1.37
VPS39-207ENST00000563692 IGHV1-24A0A0C4DH33 117 aa6.49□□□□□ -1.37
VPS39-207ENST00000563692 A8MWV9 139 aa6.49□□□□□ -1.37
VPS39-207ENST00000563692 K7EMI3 77 aa6.49□□□□□ -1.37
VPS39-207ENST00000563692 Q6ZWC4 215 aa6.49□□□□□ -1.37
VPS39-207ENST00000563692 C1orf158Q8N1D5 194 aa6.49□□□□□ -1.37
VPS39-207ENST00000563692 CSTL1Q9H114 145 aa6.49□□□□□ -1.37
VPS39-207ENST00000563692 KIF25-AS1Q9Y6Z4 181 aa6.49□□□□□ -1.37
VPS39-207ENST00000563692 A0A087WWL8 130 aa6.48□□□□□ -1.37
VPS39-207ENST00000563692 TRAV26-2A0A0B4J265 109 aa6.48□□□□□ -1.37
VPS39-207ENST00000563692 LINC01546A6NGU7 62 aa6.48□□□□□ -1.37
VPS39-207ENST00000563692 H7C1H1 209 aa6.48□□□□□ -1.37
VPS39-207ENST00000563692 IGHV4-30-4P0DP06 118 aa6.48□□□□□ -1.37
VPS39-207ENST00000563692 BTF3P20290 206 aaKnown RBP6.48□□□□□ -1.37
VPS39-207ENST00000563692 G0S2P27469 103 aa6.48□□□□□ -1.37
VPS39-207ENST00000563692 NRACQ8N912 160 aa6.48□□□□□ -1.37
VPS39-207ENST00000563692 MAP1LC3CQ9BXW4 147 aa6.48□□□□□ -1.37
VPS39-207ENST00000563692 HBDP02042 147 aa6.47□□□□□ -1.37
VPS39-207ENST00000563692 CRYGDP07320 174 aa6.47□□□□□ -1.37
VPS39-207ENST00000563692 GATA1P15976 413 aaPredicted RBP6.47□□□□□ -1.37
VPS39-207ENST00000563692 FCER1GP30273 86 aa6.47□□□□□ -1.37
VPS39-207ENST00000563692 LINC00315P59091 139 aa6.47□□□□□ -1.37
VPS39-207ENST00000563692 SUMO2P61956 95 aaKnown RBP6.47□□□□□ -1.37
VPS39-207ENST00000563692 LAGE3Q14657 143 aa6.47□□□□□ -1.37
VPS39-207ENST00000563692 ZNF56Q15929 161 aa6.47□□□□□ -1.37
VPS39-207ENST00000563692 PMCHL1Q16048 86 aa6.47□□□□□ -1.37
VPS39-207ENST00000563692 ORMDL2Q53FV1 153 aa6.47□□□□□ -1.37
VPS39-207ENST00000563692 FAM74A4Q5TZK3 123 aa6.47□□□□□ -1.37
VPS39-207ENST00000563692 SBSPONQ8IVN8 264 aa6.47□□□□□ -1.37
VPS39-207ENST00000563692 TMEM263Q8WUH6 116 aaKnown RBP6.47□□□□□ -1.37
VPS39-207ENST00000563692 TMEM70Q9BUB7 260 aa6.47□□□□□ -1.37
VPS39-207ENST00000563692 WFDC10AQ9H1F0 79 aa6.47□□□□□ -1.37
VPS39-207ENST00000563692 ST20Q9HBF5 79 aa6.47□□□□□ -1.37
VPS39-207ENST00000563692 C20orf202A1L168 122 aa6.46□□□□□ -1.38
VPS39-207ENST00000563692 RHODO00212 210 aa6.46□□□□□ -1.38
VPS39-207ENST00000563692 VCYO14598 125 aa6.46□□□□□ -1.38
VPS39-207ENST00000563692 GAS8-AS1O95177 125 aa6.46□□□□□ -1.38
VPS39-207ENST00000563692 C3orf79P0CE67 100 aa6.46□□□□□ -1.38
VPS39-207ENST00000563692 APOC4P55056 127 aa6.46□□□□□ -1.38
VPS39-207ENST00000563692 RPL32P62910 135 aaKnown RBP6.46□□□□□ -1.38
VPS39-207ENST00000563692 RRN3P1Q2M238 152 aa6.46□□□□□ -1.38
VPS39-207ENST00000563692 LGALS9BQ3B8N2 356 aa6.46□□□□□ -1.38
VPS39-207ENST00000563692 SUMO4Q6EEV6 95 aa6.46□□□□□ -1.38
VPS39-207ENST00000563692 C11orf72Q8NBR9 251 aa6.46□□□□□ -1.38
VPS39-207ENST00000563692 RASL10AQ92737 203 aa6.46□□□□□ -1.38
VPS39-207ENST00000563692 C16orf74Q96GX8 76 aa6.46□□□□□ -1.38
VPS39-207ENST00000563692 JPT2Q9H910 190 aa6.46□□□□□ -1.38
VPS39-207ENST00000563692 KIR2DL5BA0A0G2JN68 375 aa6.45□□□□□ -1.38
VPS39-207ENST00000563692 KIR2DL5BA0A0G2JPC4 375 aa6.45□□□□□ -1.38
VPS39-207ENST00000563692 TRBV6-5A0A0K0K1A5 114 aa6.45□□□□□ -1.38
VPS39-207ENST00000563692 SMIM9A6NGZ8 99 aa6.45□□□□□ -1.38
VPS39-207ENST00000563692 LINC01549A6NIU2 74 aa6.45□□□□□ -1.38
VPS39-207ENST00000563692 A8MZ25 164 aa6.45□□□□□ -1.38
VPS39-207ENST00000563692 C3orf84H3BNL1 204 aa6.45□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 113.3 ms