RNA–Protein interactions for RNA: ENST00000559711.5

USP3-213, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5 BASIC

Gene USP3, Length 1,693 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-213ENST00000559711 ZNF415Q09FC8 603 aa9.23□□□□□ -0.93
USP3-213ENST00000559711 ZNF876PQ49A33 203 aa9.23□□□□□ -0.93
USP3-213ENST00000559711 C11orf72Q8NBR9 251 aa9.23□□□□□ -0.93
USP3-213ENST00000559711 RASL10AQ92737 203 aa9.23□□□□□ -0.93
USP3-213ENST00000559711 LEPROTL1O95214 131 aa9.23□□□□□ -0.93
USP3-213ENST00000559711 PPP1R17O96001 155 aa9.23□□□□□ -0.93
USP3-213ENST00000559711 CRYGDP07320 174 aa9.23□□□□□ -0.93
USP3-213ENST00000559711 MGPP08493 103 aa9.23□□□□□ -0.93
USP3-213ENST00000559711 MORN3Q6PF18 240 aaPredicted RBP9.23□□□□□ -0.93
USP3-213ENST00000559711 Q8N8P6 123 aa9.23□□□□□ -0.93
USP3-213ENST00000559711 C20orf78Q9BR46 151 aa9.23□□□□□ -0.93
USP3-213ENST00000559711 SPXQ9BT56 116 aa9.23□□□□□ -0.93
USP3-213ENST00000559711 ZNF747Q9BV97 191 aa9.23□□□□□ -0.93
USP3-213ENST00000559711 A0A096LNJ9 63 aa9.22□□□□□ -0.93
USP3-213ENST00000559711 M0R2P5 195 aa9.22□□□□□ -0.93
USP3-213ENST00000559711 WIPF1O43516 503 aa9.22□□□□□ -0.93
USP3-213ENST00000559711 Q8N976 141 aa9.22□□□□□ -0.93
USP3-213ENST00000559711 TMEM208Q9BTX3 173 aa9.22□□□□□ -0.93
USP3-213ENST00000559711 C1QTNF4Q9BXJ3 329 aa9.22□□□□□ -0.93
USP3-213ENST00000559711 A0A087WWL8 130 aa9.21□□□□□ -0.93
USP3-213ENST00000559711 RPL35AP18077 110 aaKnown RBP9.21□□□□□ -0.93
USP3-213ENST00000559711 GTSCR1Q86UQ5 136 aa9.21□□□□□ -0.93
USP3-213ENST00000559711 HSPB8Q9UJY1 196 aa9.21□□□□□ -0.93
USP3-213ENST00000559711 AZU1P20160 251 aa9.2□□□□□ -0.94
USP3-213ENST00000559711 BTF3P20290 206 aaKnown RBP9.2□□□□□ -0.94
USP3-213ENST00000559711 SUMO2P61956 95 aaKnown RBP9.2□□□□□ -0.94
USP3-213ENST00000559711 SUMO4Q6EEV6 95 aa9.2□□□□□ -0.94
USP3-213ENST00000559711 LINC00173Q6ZV60 143 aa9.2□□□□□ -0.94
USP3-213ENST00000559711 CSNK1G2-AS1Q8NCQ2 148 aa9.2□□□□□ -0.94
USP3-213ENST00000559711 NOTCH3Q9UM47 2321 aa9.2□□□□□ -0.94
USP3-213ENST00000559711 FBN1P35555 2871 aaKnown RBP9.2□□□□□ -0.94
USP3-213ENST00000559711 HBDP02042 147 aa9.2□□□□□ -0.94
USP3-213ENST00000559711 RPL32P62910 135 aaKnown RBP9.2□□□□□ -0.94
USP3-213ENST00000559711 S100A12P80511 92 aa9.2□□□□□ -0.94
USP3-213ENST00000559711 PRIMA1Q86XR5 153 aa9.2□□□□□ -0.94
USP3-213ENST00000559711 IL17DQ8TAD2 202 aa9.2□□□□□ -0.94
USP3-213ENST00000559711 RPL39LQ96EH5 51 aaKnown RBP9.2□□□□□ -0.94
USP3-213ENST00000559711 NDUFAF3Q9BU61 184 aa9.2□□□□□ -0.94
USP3-213ENST00000559711 TMEM70Q9BUB7 260 aa9.2□□□□□ -0.94
USP3-213ENST00000559711 SMIM2Q9BVW6 85 aa9.2□□□□□ -0.94
USP3-213ENST00000559711 GOLT1BQ9Y3E0 138 aa9.2□□□□□ -0.94
USP3-213ENST00000559711 A8MWV9 139 aa9.19□□□□□ -0.94
USP3-213ENST00000559711 TEX43Q6ZNM6 134 aa9.19□□□□□ -0.94
USP3-213ENST00000559711 RNASE8Q8TDE3 154 aaKnown RBP9.19□□□□□ -0.94
USP3-213ENST00000559711 IGHV3OR16-12A0A075B7B8 117 aa9.18□□□□□ -0.94
USP3-213ENST00000559711 F5H697 171 aa9.18□□□□□ -0.94
USP3-213ENST00000559711 SYS1-DBNDD2H3BUS1 97 aa9.18□□□□□ -0.94
USP3-213ENST00000559711 M0QY20 66 aa9.18□□□□□ -0.94
USP3-213ENST00000559711 FCER1GP30273 86 aa9.18□□□□□ -0.94
USP3-213ENST00000559711 FAM74A4Q5TZK3 123 aa9.18□□□□□ -0.94
USP3-213ENST00000559711 UFSP1Q6NVU6 142 aa9.18□□□□□ -0.94
USP3-213ENST00000559711 EDA2RQ9HAV5 297 aa9.18□□□□□ -0.94
USP3-213ENST00000559711 TRBV6-5A0A0K0K1A5 114 aa9.17□□□□□ -0.94
USP3-213ENST00000559711 PCP4L1A6NKN8 68 aa9.17□□□□□ -0.94
USP3-213ENST00000559711 K7EMI3 77 aa9.17□□□□□ -0.94
USP3-213ENST00000559711 IGLL1P15814 213 aa9.17□□□□□ -0.94
USP3-213ENST00000559711 LAGE3Q14657 143 aa9.17□□□□□ -0.94
USP3-213ENST00000559711 ZNF705AQ6ZN79 300 aaPredicted RBP9.17□□□□□ -0.94
USP3-213ENST00000559711 TMEM263Q8WUH6 116 aaKnown RBP9.17□□□□□ -0.94
USP3-213ENST00000559711 MAP1LC3CQ9BXW4 147 aa9.17□□□□□ -0.94
USP3-213ENST00000559711 CSTL1Q9H114 145 aa9.17□□□□□ -0.94
USP3-213ENST00000559711 MAST4O15021 2626 aa9.17□□□□□ -0.94
USP3-213ENST00000559711 POLR2KP53803 58 aaKnown RBP9.16□□□□□ -0.94
USP3-213ENST00000559711 SHISA2Q6UWI4 295 aa9.16□□□□□ -0.94
USP3-213ENST00000559711 PET117Q6UWS5 81 aa9.16□□□□□ -0.94
USP3-213ENST00000559711 SPATA12Q7Z6I5 190 aa9.16□□□□□ -0.94
USP3-213ENST00000559711 ZNF664Q8N3J9 261 aa9.16□□□□□ -0.94
USP3-213ENST00000559711 ST20Q9HBF5 79 aa9.16□□□□□ -0.94
USP3-213ENST00000559711 ZNF56Q15929 161 aa9.16□□□□□ -0.94
USP3-213ENST00000559711 CFAP126Q5VTH2 177 aa9.16□□□□□ -0.94
USP3-213ENST00000559711 C3orf56Q8N813 242 aa9.16□□□□□ -0.94
USP3-213ENST00000559711 TMEM158Q8WZ71 300 aa9.16□□□□□ -0.94
USP3-213ENST00000559711 TRRAPQ9Y4A5 3859 aa9.15□□□□□ -0.94
USP3-213ENST00000559711 TCAPO15273 167 aa9.15□□□□□ -0.94
USP3-213ENST00000559711 RS1O15537 224 aa9.15□□□□□ -0.94
USP3-213ENST00000559711 PKIAP61925 76 aa9.15□□□□□ -0.94
USP3-213ENST00000559711 DAZ2Q13117 558 aaKnown RBP9.15□□□□□ -0.94
USP3-213ENST00000559711 ORMDL2Q53FV1 153 aa9.15□□□□□ -0.94
USP3-213ENST00000559711 MRPL16Q9NX20 251 aaKnown RBP9.15□□□□□ -0.94
USP3-213ENST00000559711 RHODO00212 210 aa9.14□□□□□ -0.95
USP3-213ENST00000559711 VCYO14598 125 aa9.14□□□□□ -0.95
USP3-213ENST00000559711 LGALS9BQ3B8N2 356 aa9.14□□□□□ -0.95
USP3-213ENST00000559711 C16orf74Q96GX8 76 aa9.14□□□□□ -0.95
USP3-213ENST00000559711 TRBV27A0A0K0K1C4 114 aa9.13□□□□□ -0.95
USP3-213ENST00000559711 C20orf202A1L168 122 aa9.13□□□□□ -0.95
USP3-213ENST00000559711 PLAC8L1A1L4L8 177 aa9.13□□□□□ -0.95
USP3-213ENST00000559711 H7C1H1 209 aa9.13□□□□□ -0.95
USP3-213ENST00000559711 LINC01545Q5VT33 79 aa9.13□□□□□ -0.95
USP3-213ENST00000559711 C12orf54Q6X4T0 127 aa9.13□□□□□ -0.95
USP3-213ENST00000559711 ZFP2Q6ZN57 461 aa9.13□□□□□ -0.95
USP3-213ENST00000559711 IFI27L1Q96BM0 104 aa9.13□□□□□ -0.95
USP3-213ENST00000559711 KIR2DL5BA0A0G2JN68 375 aa9.13□□□□□ -0.95
USP3-213ENST00000559711 KIR2DL5BA0A0G2JPC4 375 aa9.13□□□□□ -0.95
USP3-213ENST00000559711 SDHAF1A6NFY7 115 aa9.13□□□□□ -0.95
USP3-213ENST00000559711 RRN3P1Q2M238 152 aa9.13□□□□□ -0.95
USP3-213ENST00000559711 KIR2DL5AQ8N109 375 aa9.13□□□□□ -0.95
USP3-213ENST00000559711 KIR2DL5BQ8NHK3 375 aa9.13□□□□□ -0.95
USP3-213ENST00000559711 OVOL2Q9BRP0 275 aa9.13□□□□□ -0.95
USP3-213ENST00000559711 TSTD3H0UI37 97 aa9.12□□□□□ -0.95
USP3-213ENST00000559711 NUDT3O95989 172 aa9.12□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 102.3 ms