RNA–Protein interactions for RNA: ENST00000556726.5

CCDC88C-211, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5

Gene CCDC88C, Length 3,617 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-211ENST00000556726 IGHV3-38A0A0C4DH36 116 aa9.23□□□□□ -0.93
CCDC88C-211ENST00000556726 IGHV7-4-1A0A0J9YVY3 117 aa9.23□□□□□ -0.93
CCDC88C-211ENST00000556726 IGHV3-53P01767 116 aa9.23□□□□□ -0.93
CCDC88C-211ENST00000556726 RAX2Q96IS3 184 aa9.23□□□□□ -0.93
CCDC88C-211ENST00000556726 UBE2E2Q96LR5 201 aa9.23□□□□□ -0.93
CCDC88C-211ENST00000556726 HRNRQ86YZ3 2850 aaPredicted RBP9.23□□□□□ -0.93
CCDC88C-211ENST00000556726 TRBV6-1A0A0K0K1D8 114 aa9.23□□□□□ -0.93
CCDC88C-211ENST00000556726 F8VRH5 84 aa9.23□□□□□ -0.93
CCDC88C-211ENST00000556726 HOXA3O43365 443 aaPredicted RBP9.23□□□□□ -0.93
CCDC88C-211ENST00000556726 USMG5Q96IX5 58 aa9.23□□□□□ -0.93
CCDC88C-211ENST00000556726 LINC01587Q99440 93 aa9.23□□□□□ -0.93
CCDC88C-211ENST00000556726 UTP20O75691 2785 aaKnown RBP9.22□□□□□ -0.93
CCDC88C-211ENST00000556726 LINC01549A6NIU2 74 aa9.22□□□□□ -0.93
CCDC88C-211ENST00000556726 FGF6P10767 208 aa9.22□□□□□ -0.93
CCDC88C-211ENST00000556726 PLNP26678 52 aa9.22□□□□□ -0.93
CCDC88C-211ENST00000556726 GATD1Q8NB37 220 aa9.22□□□□□ -0.93
CCDC88C-211ENST00000556726 SPXQ9BT56 116 aa9.22□□□□□ -0.93
CCDC88C-211ENST00000556726 MDFICQ9P1T7 246 aa9.22□□□□□ -0.93
CCDC88C-211ENST00000556726 A0A087WX48 190 aa9.22□□□□□ -0.93
CCDC88C-211ENST00000556726 K7EP34 96 aa9.22□□□□□ -0.93
CCDC88C-211ENST00000556726 SMPXQ9UHP9 88 aa9.22□□□□□ -0.93
CCDC88C-211ENST00000556726 EBI3Q14213 229 aa9.21□□□□□ -0.93
CCDC88C-211ENST00000556726 AVPP01185 164 aa9.21□□□□□ -0.94
CCDC88C-211ENST00000556726 ZNF48Q96MX3 618 aaPredicted RBP9.21□□□□□ -0.94
CCDC88C-211ENST00000556726 VCX2Q9H322 139 aa9.21□□□□□ -0.94
CCDC88C-211ENST00000556726 TNFRSF18Q9Y5U5 241 aa9.21□□□□□ -0.94
CCDC88C-211ENST00000556726 TEX48A0A1B0GUV7 120 aa9.2□□□□□ -0.94
CCDC88C-211ENST00000556726 PAX2Q02962 417 aa9.2□□□□□ -0.94
CCDC88C-211ENST00000556726 C9orf47Q6ZRZ4 202 aa9.2□□□□□ -0.94
CCDC88C-211ENST00000556726 CEND1Q8N111 149 aa9.2□□□□□ -0.94
CCDC88C-211ENST00000556726 TMEM238LA0A1B0GVL6 79 aa9.2□□□□□ -0.94
CCDC88C-211ENST00000556726 A6NJY4 79 aa9.2□□□□□ -0.94
CCDC88C-211ENST00000556726 WFDC2Q14508 124 aa9.2□□□□□ -0.94
CCDC88C-211ENST00000556726 RBX1P62877 108 aa9.2□□□□□ -0.94
CCDC88C-211ENST00000556726 TMEM190Q8WZ59 177 aa9.2□□□□□ -0.94
CCDC88C-211ENST00000556726 MRAP2Q96G30 205 aa9.2□□□□□ -0.94
CCDC88C-211ENST00000556726 CFAP46Q8IYW2 2715 aa9.2□□□□□ -0.94
CCDC88C-211ENST00000556726 TCTEX1D4Q5JR98 221 aa9.19□□□□□ -0.94
CCDC88C-211ENST00000556726 C10orf105Q8TEF2 133 aa9.19□□□□□ -0.94
CCDC88C-211ENST00000556726 RASL10AQ92737 203 aa9.19□□□□□ -0.94
CCDC88C-211ENST00000556726 ZNF625Q96I27 306 aaPredicted RBP9.19□□□□□ -0.94
CCDC88C-211ENST00000556726 RBAKDNA6NC62 111 aa9.19□□□□□ -0.94
CCDC88C-211ENST00000556726 CD28P10747 220 aa9.19□□□□□ -0.94
CCDC88C-211ENST00000556726 C12orf74Q32Q52 190 aa9.19□□□□□ -0.94
CCDC88C-211ENST00000556726 GAGE13Q4V321 117 aa9.19□□□□□ -0.94
CCDC88C-211ENST00000556726 ZFAND2AQ8N6M9 145 aa9.19□□□□□ -0.94
CCDC88C-211ENST00000556726 MYMXA0A1B0GTQ4 84 aa9.19□□□□□ -0.94
CCDC88C-211ENST00000556726 XCL2Q9UBD3 114 aa9.19□□□□□ -0.94
CCDC88C-211ENST00000556726 VCYO14598 125 aa9.18□□□□□ -0.94
CCDC88C-211ENST00000556726 SLURP1P55000 103 aa9.18□□□□□ -0.94
CCDC88C-211ENST00000556726 SUMO4Q6EEV6 95 aa9.18□□□□□ -0.94
CCDC88C-211ENST00000556726 P0DMU3 169 aa9.18□□□□□ -0.94
CCDC88C-211ENST00000556726 FAM231AP0DMU4 169 aa9.18□□□□□ -0.94
CCDC88C-211ENST00000556726 FAM231CP0DMU5 169 aa9.18□□□□□ -0.94
CCDC88C-211ENST00000556726 OR5A1Q8NGJ0 315 aa9.18□□□□□ -0.94
CCDC88C-211ENST00000556726 U3KQK5 164 aa9.18□□□□□ -0.94
CCDC88C-211ENST00000556726 APRG1Q8IVJ8 170 aa9.18□□□□□ -0.94
CCDC88C-211ENST00000556726 Q8N1Y9 231 aa9.18□□□□□ -0.94
CCDC88C-211ENST00000556726 CEMP1Q6PRD7 247 aaPredicted RBP9.17□□□□□ -0.94
CCDC88C-211ENST00000556726 NRACQ8N912 160 aa9.17□□□□□ -0.94
CCDC88C-211ENST00000556726 GEMIN7Q9H840 131 aaKnown RBP9.17□□□□□ -0.94
CCDC88C-211ENST00000556726 BAALCQ8WXS3 180 aa9.17□□□□□ -0.94
CCDC88C-211ENST00000556726 IGHG2P01859 326 aa9.16□□□□□ -0.94
CCDC88C-211ENST00000556726 HOXD3P31249 432 aaPredicted RBP9.16□□□□□ -0.94
CCDC88C-211ENST00000556726 C11orf86A6NJI1 115 aa9.16□□□□□ -0.94
CCDC88C-211ENST00000556726 PPP1R17O96001 155 aa9.16□□□□□ -0.94
CCDC88C-211ENST00000556726 CDKN1BP46527 198 aa9.16□□□□□ -0.94
CCDC88C-211ENST00000556726 TSSC4Q9Y5U2 329 aaPredicted RBP9.16□□□□□ -0.94
CCDC88C-211ENST00000556726 IGHV4OR15-8A0A075B7B6 117 aa9.16□□□□□ -0.94
CCDC88C-211ENST00000556726 A0A087WW49 117 aa9.16□□□□□ -0.94
CCDC88C-211ENST00000556726 CIDEAO60543 219 aa9.16□□□□□ -0.94
CCDC88C-211ENST00000556726 CFHR3Q02985 330 aa9.16□□□□□ -0.94
CCDC88C-211ENST00000556726 PLEKHB2Q96CS7 222 aa9.15□□□□□ -0.94
CCDC88C-211ENST00000556726 IGSF10Q6WRI0 2623 aa9.15□□□□□ -0.94
CCDC88C-211ENST00000556726 IGHV1OR15-1A0A075B7D0 117 aa9.15□□□□□ -0.94
CCDC88C-211ENST00000556726 IGLL5B9A064 214 aa9.15□□□□□ -0.94
CCDC88C-211ENST00000556726 HECTD1Q9ULT8 2610 aa9.15□□□□□ -0.94
CCDC88C-211ENST00000556726 HHLA3Q9XRX5 114 aa9.15□□□□□ -0.94
CCDC88C-211ENST00000556726 PMVKQ15126 192 aa9.14□□□□□ -0.95
CCDC88C-211ENST00000556726 ZFP2Q6ZN57 461 aa9.14□□□□□ -0.95
CCDC88C-211ENST00000556726 A0A0J9YXV3 536 aa9.14□□□□□ -0.95
CCDC88C-211ENST00000556726 PROK1P58294 105 aa9.14□□□□□ -0.95
CCDC88C-211ENST00000556726 PIFOQ8TCI5 191 aa9.14□□□□□ -0.95
CCDC88C-211ENST00000556726 PTH2Q96A98 100 aa9.14□□□□□ -0.95
CCDC88C-211ENST00000556726 C18orf65Q6ZTR6 163 aa9.13□□□□□ -0.95
CCDC88C-211ENST00000556726 LINC01356Q8N9X3 169 aa9.13□□□□□ -0.95
CCDC88C-211ENST00000556726 RNASE3P12724 160 aaKnown RBP9.13□□□□□ -0.95
CCDC88C-211ENST00000556726 SAMD13Q5VXD3 122 aa9.13□□□□□ -0.95
CCDC88C-211ENST00000556726 FLNAP21333 2647 aaKnown RBP9.13□□□□□ -0.95
CCDC88C-211ENST00000556726 TRGV1A0A0A0MS02 117 aa9.13□□□□□ -0.95
CCDC88C-211ENST00000556726 A6NDX4 124 aa9.13□□□□□ -0.95
CCDC88C-211ENST00000556726 SIVA1O15304 175 aa9.13□□□□□ -0.95
CCDC88C-211ENST00000556726 TOMM7Q9P0U1 55 aa9.13□□□□□ -0.95
CCDC88C-211ENST00000556726 IGKV2D-29A0A075B6S2 120 aaPredicted RBP9.12□□□□□ -0.95
CCDC88C-211ENST00000556726 IGKV2-29A2NJV5 120 aaPredicted RBP9.12□□□□□ -0.95
CCDC88C-211ENST00000556726 MRPL53Q96EL3 112 aaKnown RBP9.12□□□□□ -0.95
CCDC88C-211ENST00000556726 HIST2H2BCQ6DN03 193 aa9.12□□□□□ -0.95
CCDC88C-211ENST00000556726 C20orf78Q9BR46 151 aa9.12□□□□□ -0.95
CCDC88C-211ENST00000556726 TEX15Q9BXT5 2789 aa9.11□□□□□ -0.95
CCDC88C-211ENST00000556726 TRAV13-1A0A0B4J241 112 aa9.11□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms