RNA–Protein interactions for RNA: ENST00000552823.5

LIMA1-215, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 3,254 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-215ENST00000552823 DSCR9P59020 149 aa4.18□□□□□ -1.74
LIMA1-215ENST00000552823 OR4C5Q8NGB2 326 aa4.18□□□□□ -1.74
LIMA1-215ENST00000552823 RASL10AQ92737 203 aa4.18□□□□□ -1.74
LIMA1-215ENST00000552823 PRSS29PA6NIE9 313 aa4.17□□□□□ -1.74
LIMA1-215ENST00000552823 H3BUT2 72 aa4.17□□□□□ -1.74
LIMA1-215ENST00000552823 SUMO2P61956 95 aaKnown RBP4.17□□□□□ -1.74
LIMA1-215ENST00000552823 C19orf54Q5BKX5 351 aa4.17□□□□□ -1.74
LIMA1-215ENST00000552823 CEMP1Q6PRD7 247 aaPredicted RBP4.17□□□□□ -1.74
LIMA1-215ENST00000552823 OR1N2Q8NGR9 330 aa4.17□□□□□ -1.74
LIMA1-215ENST00000552823 DPH3P1Q9H4G8 78 aa4.17□□□□□ -1.74
LIMA1-215ENST00000552823 ST20Q9HBF5 79 aa4.17□□□□□ -1.74
LIMA1-215ENST00000552823 SOCS3O14543 225 aa4.17□□□□□ -1.74
LIMA1-215ENST00000552823 CCL25O15444 150 aa4.17□□□□□ -1.74
LIMA1-215ENST00000552823 IGKCP01834 107 aa4.17□□□□□ -1.74
LIMA1-215ENST00000552823 BVES-AS1Q5T3Y7 98 aa4.17□□□□□ -1.74
LIMA1-215ENST00000552823 C2orf66Q6UXQ4 117 aa4.17□□□□□ -1.74
LIMA1-215ENST00000552823 Q8N8P6 123 aa4.17□□□□□ -1.74
LIMA1-215ENST00000552823 DCANP1Q8TF63 244 aa4.17□□□□□ -1.74
LIMA1-215ENST00000552823 NXT2Q9NPJ8 142 aaKnown RBP4.17□□□□□ -1.74
LIMA1-215ENST00000552823 SCRT2Q9NQ03 307 aa4.17□□□□□ -1.74
LIMA1-215ENST00000552823 RBAKDNA6NC62 111 aa4.17□□□□□ -1.74
LIMA1-215ENST00000552823 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP4.17□□□□□ -1.74
LIMA1-215ENST00000552823 PPBPP02775 128 aa4.17□□□□□ -1.74
LIMA1-215ENST00000552823 LGALS1P09382 135 aaKnown RBP4.17□□□□□ -1.74
LIMA1-215ENST00000552823 CD28P10747 220 aa4.17□□□□□ -1.74
LIMA1-215ENST00000552823 PLA2G2AP14555 144 aa4.17□□□□□ -1.74
LIMA1-215ENST00000552823 TMEM97Q5BJF2 176 aa4.17□□□□□ -1.74
LIMA1-215ENST00000552823 TMEM170BQ5T4T1 132 aa4.17□□□□□ -1.74
LIMA1-215ENST00000552823 Q6YL49 198 aa4.17□□□□□ -1.74
LIMA1-215ENST00000552823 NRACQ8N912 160 aa4.17□□□□□ -1.74
LIMA1-215ENST00000552823 SMIM2Q9BVW6 85 aa4.17□□□□□ -1.74
LIMA1-215ENST00000552823 MRPL16Q9NX20 251 aaKnown RBP4.17□□□□□ -1.74
LIMA1-215ENST00000552823 CR1P17927 2039 aa4.16□□□□□ -1.74
LIMA1-215ENST00000552823 OTOGQ6ZRI0 2925 aa4.16□□□□□ -1.74
LIMA1-215ENST00000552823 IGKV3OR2-268A0A0C4DH90 116 aa4.16□□□□□ -1.74
LIMA1-215ENST00000552823 SDHAF1A6NFY7 115 aa4.16□□□□□ -1.74
LIMA1-215ENST00000552823 SUMO4Q6EEV6 95 aa4.16□□□□□ -1.74
LIMA1-215ENST00000552823 Q6ZSV7 163 aa4.16□□□□□ -1.74
LIMA1-215ENST00000552823 MAPKAPK5-AS1Q8N8E1 139 aa4.16□□□□□ -1.74
LIMA1-215ENST00000552823 CITED2Q99967 270 aaPredicted RBP4.16□□□□□ -1.74
LIMA1-215ENST00000552823 NHP2Q9NX24 153 aaKnown RBP4.16□□□□□ -1.74
LIMA1-215ENST00000552823 TP53TG1Q9Y2A0 90 aa4.16□□□□□ -1.74
LIMA1-215ENST00000552823 MGAM2Q2M2H8 2515 aa4.16□□□□□ -1.74
LIMA1-215ENST00000552823 ADARB2-AS1A8MUL3 147 aa4.16□□□□□ -1.74
LIMA1-215ENST00000552823 COX8AP10176 69 aa4.16□□□□□ -1.74
LIMA1-215ENST00000552823 GATA3P23771 443 aa4.16□□□□□ -1.74
LIMA1-215ENST00000552823 CDKN1BP46527 198 aa4.16□□□□□ -1.74
LIMA1-215ENST00000552823 SCGB1D4Q6XE38 83 aa4.16□□□□□ -1.74
LIMA1-215ENST00000552823 ADAMTSL5Q6ZMM2 481 aa4.16□□□□□ -1.74
LIMA1-215ENST00000552823 CYSLTR1Q9Y271 337 aa4.16□□□□□ -1.74
LIMA1-215ENST00000552823 CHTOPQ9Y3Y2 248 aaKnown RBP4.16□□□□□ -1.74
LIMA1-215ENST00000552823 VWFP04275 2813 aa4.16□□□□□ -1.74
LIMA1-215ENST00000552823 HIVEP1P15822 2718 aa4.15□□□□□ -1.74
LIMA1-215ENST00000552823 IGHV1OR15-1A0A075B7D0 117 aa4.15□□□□□ -1.74
LIMA1-215ENST00000552823 A0A096LNT2 108 aa4.15□□□□□ -1.74
LIMA1-215ENST00000552823 A0A0J9YX75 114 aa4.15□□□□□ -1.74
LIMA1-215ENST00000552823 A0A0U1RRA0 63 aa4.15□□□□□ -1.74
LIMA1-215ENST00000552823 H7C2G1 150 aa4.15□□□□□ -1.74
LIMA1-215ENST00000552823 SAP30O75446 220 aa4.15□□□□□ -1.74
LIMA1-215ENST00000552823 DPM2O94777 84 aa4.15□□□□□ -1.74
LIMA1-215ENST00000552823 ESM1Q9NQ30 184 aa4.15□□□□□ -1.74
LIMA1-215ENST00000552823 MRPS16Q9Y3D3 137 aaKnown RBP4.15□□□□□ -1.74
LIMA1-215ENST00000552823 U3KQK5 164 aa4.15□□□□□ -1.74
LIMA1-215ENST00000552823 DNAJC9-AS1A6NH13 148 aa4.15□□□□□ -1.75
LIMA1-215ENST00000552823 LINC01619G3V211 115 aa4.15□□□□□ -1.75
LIMA1-215ENST00000552823 K7EQG2 157 aa4.15□□□□□ -1.75
LIMA1-215ENST00000552823 RBMY1A1P0DJD3 496 aaKnown RBP4.15□□□□□ -1.75
LIMA1-215ENST00000552823 RBMY1CP0DJD4 496 aa4.15□□□□□ -1.75
LIMA1-215ENST00000552823 RBMY1FQ15415 496 aaKnown RBP4.15□□□□□ -1.75
LIMA1-215ENST00000552823 C2orf91Q6ZV80 131 aa4.15□□□□□ -1.75
LIMA1-215ENST00000552823 CBY1Q9Y3M2 126 aa4.15□□□□□ -1.75
LIMA1-215ENST00000552823 FXYD2P54710 66 aa4.15□□□□□ -1.75
LIMA1-215ENST00000552823 NPC2P61916 151 aa4.15□□□□□ -1.75
LIMA1-215ENST00000552823 LGALS9BQ3B8N2 356 aa4.15□□□□□ -1.75
LIMA1-215ENST00000552823 LGALS9CQ6DKI2 356 aa4.15□□□□□ -1.75
LIMA1-215ENST00000552823 C12orf54Q6X4T0 127 aa4.15□□□□□ -1.75
LIMA1-215ENST00000552823 HIST1H4GQ99525 98 aa4.15□□□□□ -1.75
LIMA1-215ENST00000552823 COX11Q9Y6N1 276 aa4.15□□□□□ -1.75
LIMA1-215ENST00000552823 COL6A5A8TX70 2615 aa4.14□□□□□ -1.75
LIMA1-215ENST00000552823 TAX1BP3O14907 124 aa4.14□□□□□ -1.75
LIMA1-215ENST00000552823 CRXO43186 299 aaPredicted RBP4.14□□□□□ -1.75
LIMA1-215ENST00000552823 ELANEP08246 267 aa4.14□□□□□ -1.75
LIMA1-215ENST00000552823 KIR2DL4Q99706 377 aa4.14□□□□□ -1.75
LIMA1-215ENST00000552823 H3BUA1 57 aa4.14□□□□□ -1.75
LIMA1-215ENST00000552823 ATP5LO75964 103 aa4.14□□□□□ -1.75
LIMA1-215ENST00000552823 APOMO95445 188 aa4.14□□□□□ -1.75
LIMA1-215ENST00000552823 SRSF9Q13242 221 aaKnown RBP eCLIP4.14□□□□□ -1.75
LIMA1-215ENST00000552823 OR9G4Q8NGQ1 327 aa4.14□□□□□ -1.75
LIMA1-215ENST00000552823 ORAOV1Q8WV07 137 aa4.14□□□□□ -1.75
LIMA1-215ENST00000552823 MRPL53Q96EL3 112 aaKnown RBP4.14□□□□□ -1.75
LIMA1-215ENST00000552823 TENM1Q9UKZ4 2725 aa4.13□□□□□ -1.75
LIMA1-215ENST00000552823 TRGV1A0A0A0MS02 117 aa4.13□□□□□ -1.75
LIMA1-215ENST00000552823 OR11H12B2RN74 326 aa4.13□□□□□ -1.75
LIMA1-215ENST00000552823 AZU1P20160 251 aa4.13□□□□□ -1.75
LIMA1-215ENST00000552823 LCE2DQ5TA82 110 aaPredicted RBP4.13□□□□□ -1.75
LIMA1-215ENST00000552823 OR11H2Q8NH07 326 aa4.13□□□□□ -1.75
LIMA1-215ENST00000552823 IGLV2-18A0A075B6J9 118 aa4.13□□□□□ -1.75
LIMA1-215ENST00000552823 IGKV2D-29A0A075B6S2 120 aaPredicted RBP4.13□□□□□ -1.75
LIMA1-215ENST00000552823 IGKV2-29A2NJV5 120 aaPredicted RBP4.13□□□□□ -1.75
LIMA1-215ENST00000552823 RBMY1BA6NDE4 496 aaKnown RBP4.13□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms