RNA–Protein interactions for RNA: ENST00000512820.5

LIMCH1-216, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,071 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-216ENST00000512820 MRPS12O15235 138 aaKnown RBP6.41□□□□□ -1.38
LIMCH1-216ENST00000512820 CHCHD5Q9BSY4 110 aa6.41□□□□□ -1.38
LIMCH1-216ENST00000512820 JPT2Q9H910 190 aa6.41□□□□□ -1.38
LIMCH1-216ENST00000512820 RBMY1BA6NDE4 496 aaKnown RBP6.41□□□□□ -1.38
LIMCH1-216ENST00000512820 RBMY1EA6NEQ0 496 aaKnown RBP6.41□□□□□ -1.38
LIMCH1-216ENST00000512820 RBMY1DP0C7P1 496 aaKnown RBP6.41□□□□□ -1.38
LIMCH1-216ENST00000512820 RBMY1A1P0DJD3 496 aaKnown RBP6.41□□□□□ -1.38
LIMCH1-216ENST00000512820 RBMY1CP0DJD4 496 aa6.41□□□□□ -1.38
LIMCH1-216ENST00000512820 XCL2Q9UBD3 114 aa6.41□□□□□ -1.38
LIMCH1-216ENST00000512820 FOXI1Q12951 378 aa6.41□□□□□ -1.38
LIMCH1-216ENST00000512820 ADAMTS20P59510 1910 aa6.4□□□□□ -1.38
LIMCH1-216ENST00000512820 CHD9Q3L8U1 2897 aa6.4□□□□□ -1.38
LIMCH1-216ENST00000512820 TIMM17AQ99595 171 aa6.4□□□□□ -1.38
LIMCH1-216ENST00000512820 SPAG8Q99932 426 aaPredicted RBP6.4□□□□□ -1.38
LIMCH1-216ENST00000512820 MKI67P46013 3256 aaKnown RBP6.4□□□□□ -1.38
LIMCH1-216ENST00000512820 TEN1Q86WV5 123 aa6.4□□□□□ -1.38
LIMCH1-216ENST00000512820 MUSTN1Q8IVN3 82 aa6.4□□□□□ -1.38
LIMCH1-216ENST00000512820 C11orf21Q9P2W6 132 aa6.4□□□□□ -1.38
LIMCH1-216ENST00000512820 IGHV4-59P01825 116 aa6.4□□□□□ -1.39
LIMCH1-216ENST00000512820 CRPP02741 224 aa6.4□□□□□ -1.39
LIMCH1-216ENST00000512820 NEXN-AS1Q8NBZ9 246 aa6.4□□□□□ -1.39
LIMCH1-216ENST00000512820 DOPEY2Q9Y3R5 2298 aa6.4□□□□□ -1.39
LIMCH1-216ENST00000512820 TNRC6BQ9UPQ9 1833 aaKnown RBP6.4□□□□□ -1.39
LIMCH1-216ENST00000512820 Q8N1Y9 231 aa6.39□□□□□ -1.39
LIMCH1-216ENST00000512820 C20orf173Q96LM9 149 aa6.39□□□□□ -1.39
LIMCH1-216ENST00000512820 ZNRF2Q8NHG8 242 aa6.39□□□□□ -1.39
LIMCH1-216ENST00000512820 MRGPRG-AS1Q2M3A8 158 aa6.39□□□□□ -1.39
LIMCH1-216ENST00000512820 DEFB112Q30KQ8 113 aa6.39□□□□□ -1.39
LIMCH1-216ENST00000512820 PTH2Q96A98 100 aa6.39□□□□□ -1.39
LIMCH1-216ENST00000512820 SPANXB1Q9NS25 103 aaPredicted RBP6.39□□□□□ -1.39
LIMCH1-216ENST00000512820 MUC6Q6W4X9 2439 aa6.39□□□□□ -1.39
LIMCH1-216ENST00000512820 LMO4P61968 165 aa6.39□□□□□ -1.39
LIMCH1-216ENST00000512820 Q8N6K4 173 aa6.39□□□□□ -1.39
LIMCH1-216ENST00000512820 NRACQ8N912 160 aa6.39□□□□□ -1.39
LIMCH1-216ENST00000512820 PTPRQQ9UMZ3 2332 aa6.39□□□□□ -1.39
LIMCH1-216ENST00000512820 A0A096LNJ9 63 aa6.38□□□□□ -1.39
LIMCH1-216ENST00000512820 LINC01619G3V211 115 aa6.38□□□□□ -1.39
LIMCH1-216ENST00000512820 IGHG2P01859 326 aa6.38□□□□□ -1.39
LIMCH1-216ENST00000512820 PIFOQ8TCI5 191 aa6.38□□□□□ -1.39
LIMCH1-216ENST00000512820 IGKV2D-29A0A075B6S2 120 aaPredicted RBP6.38□□□□□ -1.39
LIMCH1-216ENST00000512820 IGKV2-29A2NJV5 120 aaPredicted RBP6.38□□□□□ -1.39
LIMCH1-216ENST00000512820 RNF223E7ERA6 249 aa6.38□□□□□ -1.39
LIMCH1-216ENST00000512820 ELANEP08246 267 aa6.38□□□□□ -1.39
LIMCH1-216ENST00000512820 HOXD3P31249 432 aaPredicted RBP6.38□□□□□ -1.39
LIMCH1-216ENST00000512820 NDUFA11Q86Y39 141 aa6.38□□□□□ -1.39
LIMCH1-216ENST00000512820 CARD19Q96LW7 228 aa6.38□□□□□ -1.39
LIMCH1-216ENST00000512820 OPRPNQ99935 248 aaPredicted RBP6.38□□□□□ -1.39
LIMCH1-216ENST00000512820 TET2Q6N021 2002 aaPredicted RBP6.38□□□□□ -1.39
LIMCH1-216ENST00000512820 GAGE12JA6NER3 117 aa6.38□□□□□ -1.39
LIMCH1-216ENST00000512820 GAGE4Q13068 117 aa6.38□□□□□ -1.39
LIMCH1-216ENST00000512820 GAGE5Q13069 117 aa6.38□□□□□ -1.39
LIMCH1-216ENST00000512820 CNFNQ9BYD5 112 aa6.38□□□□□ -1.39
LIMCH1-216ENST00000512820 MDFICQ9P1T7 246 aa6.38□□□□□ -1.39
LIMCH1-216ENST00000512820 K7EMT4 169 aa6.38□□□□□ -1.39
LIMCH1-216ENST00000512820 PAX4O43316 350 aa6.38□□□□□ -1.39
LIMCH1-216ENST00000512820 PF4P02776 101 aa6.38□□□□□ -1.39
LIMCH1-216ENST00000512820 ANKRD29Q8N6D5 301 aa6.38□□□□□ -1.39
LIMCH1-216ENST00000512820 ZFAND2AQ8N6M9 145 aa6.38□□□□□ -1.39
LIMCH1-216ENST00000512820 DSCAML1Q8TD84 2053 aa6.37□□□□□ -1.39
LIMCH1-216ENST00000512820 IGHV4-30-2A0A087WSY4 118 aa6.37□□□□□ -1.39
LIMCH1-216ENST00000512820 TLN1Q9Y490 2541 aaKnown RBP6.37□□□□□ -1.39
LIMCH1-216ENST00000512820 HHLA3Q9XRX5 114 aa6.37□□□□□ -1.39
LIMCH1-216ENST00000512820 UFSP1Q6NVU6 142 aa6.37□□□□□ -1.39
LIMCH1-216ENST00000512820 CFAP161Q6P656 301 aa6.37□□□□□ -1.39
LIMCH1-216ENST00000512820 C11orf68Q9H3H3 251 aaKnown RBP6.37□□□□□ -1.39
LIMCH1-216ENST00000512820 RPL35AP18077 110 aaKnown RBP6.37□□□□□ -1.39
LIMCH1-216ENST00000512820 ATP6V0E2Q8NHE4 81 aa6.36□□□□□ -1.39
LIMCH1-216ENST00000512820 ARHGAP32A7KAX9 2087 aa6.36□□□□□ -1.39
LIMCH1-216ENST00000512820 IFITM1P13164 125 aa6.36□□□□□ -1.39
LIMCH1-216ENST00000512820 TMEM86BQ8N661 226 aa6.36□□□□□ -1.39
LIMCH1-216ENST00000512820 C15orf53Q8NAA6 179 aa6.36□□□□□ -1.39
LIMCH1-216ENST00000512820 LINC01620Q4KN68 170 aa6.36□□□□□ -1.39
LIMCH1-216ENST00000512820 PRR9Q5T870 116 aa6.36□□□□□ -1.39
LIMCH1-216ENST00000512820 GPHB5Q86YW7 130 aa6.36□□□□□ -1.39
LIMCH1-216ENST00000512820 C10orf105Q8TEF2 133 aa6.36□□□□□ -1.39
LIMCH1-216ENST00000512820 RANBP2P49792 3224 aaKnown RBP6.36□□□□□ -1.39
LIMCH1-216ENST00000512820 PRSS47A8MTI9 375 aa6.36□□□□□ -1.39
LIMCH1-216ENST00000512820 TCL1BO95988 128 aa6.36□□□□□ -1.39
LIMCH1-216ENST00000512820 C11orf71Q6IPW1 123 aa6.36□□□□□ -1.39
LIMCH1-216ENST00000512820 GAGE2AQ6NT46 116 aa6.36□□□□□ -1.39
LIMCH1-216ENST00000512820 C20orf203Q8NBC4 194 aa6.36□□□□□ -1.39
LIMCH1-216ENST00000512820 SPANXA1Q9NS26 97 aa6.36□□□□□ -1.39
LIMCH1-216ENST00000512820 HERVK_113P63121 156 aa6.35□□□□□ -1.39
LIMCH1-216ENST00000512820 Q6ZQT7 251 aa6.35□□□□□ -1.39
LIMCH1-216ENST00000512820 CLPSL1A2RUU4 121 aa6.35□□□□□ -1.39
LIMCH1-216ENST00000512820 F8W735 103 aaPredicted RBP6.35□□□□□ -1.39
LIMCH1-216ENST00000512820 CRYBA4P53673 196 aa6.35□□□□□ -1.39
LIMCH1-216ENST00000512820 CMC4P56277 68 aaPredicted RBP6.35□□□□□ -1.39
LIMCH1-216ENST00000512820 CFHR3Q02985 330 aa6.35□□□□□ -1.39
LIMCH1-216ENST00000512820 DEFB136Q30KP8 78 aa6.35□□□□□ -1.39
LIMCH1-216ENST00000512820 LAMA2P24043 3122 aaKnown RBP6.35□□□□□ -1.39
LIMCH1-216ENST00000512820 A0A0J9YX75 114 aa6.35□□□□□ -1.39
LIMCH1-216ENST00000512820 C6orf226Q5I0X4 101 aa6.35□□□□□ -1.39
LIMCH1-216ENST00000512820 A6NDX4 124 aa6.35□□□□□ -1.39
LIMCH1-216ENST00000512820 Q9H8V8 135 aa6.35□□□□□ -1.39
LIMCH1-216ENST00000512820 U3KQE9 123 aa6.35□□□□□ -1.39
LIMCH1-216ENST00000512820 FAM208BQ5VWN6 2430 aa6.34□□□□□ -1.39
LIMCH1-216ENST00000512820 J3QLI3 93 aa6.34□□□□□ -1.39
LIMCH1-216ENST00000512820 MALP21145 153 aa6.34□□□□□ -1.39
LIMCH1-216ENST00000512820 IGHV4-4A0A075B6R2 117 aa6.34□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms